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CAKLQF020000015.1__CAH1087603.1__SAMEA5780031_02760__00080

Bact-Vir

CAKLQF020000015.1__CAH1087603.1__SAMEA5780031_02760__00080

Identity

Kingdom:
phage

Quality

88.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 65-198
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF07715.21 best Plug 34.0 5.00e-08 72.4% 97.2%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3qlbA01 2.170.130.10 Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › TonB-dependent receptor, plug domain 0.84 69.0 6.93e-01 85.1% 88.1%
2hdiA01 2.170.130.10 Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › TonB-dependent receptor, plug domain 0.81 65.0 6.69e-01 82.8% 96.9%
3m8bA01 2.170.130.10 Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › TonB-dependent receptor, plug domain 0.81 64.0 6.67e-01 82.1% 97.6%
1xkwA01 2.170.130.10 Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › TonB-dependent receptor, plug domain 0.80 57.0 6.51e-01 72.4% 100.0%
3cslA01 2.170.130.10 Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › TonB-dependent receptor, plug domain 0.79 63.0 6.44e-01 82.8% 98.4%
1kmoA01 2.170.130.10 Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › TonB-dependent receptor, plug domain 0.79 62.0 6.36e-01 82.1% 100.0%
3fhhA01 2.170.130.10 Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › TonB-dependent receptor, plug domain 0.78 62.0 6.48e-01 82.8% 96.0%
4epaA00 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.78 73.0 4.59e-01 100.0% 36.2%
1xkhA01 2.170.130.10 Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › TonB-dependent receptor, plug domain 0.78 55.0 6.17e-01 72.4% 100.0%
5fokB01 2.170.130.10 Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › TonB-dependent receptor, plug domain 0.76 62.0 6.48e-01 88.1% 92.7%
3v8xA01 2.170.130.10 Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › TonB-dependent receptor, plug domain 0.76 60.0 6.04e-01 82.1% 99.2%
4b7oA01 2.170.130.10 Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › TonB-dependent receptor, plug domain 0.72 53.0 5.80e-01 76.1% 100.0%
1c8bA00 3.40.50.1450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HybD-like 0.53 43.0 3.25e-01 85.1% 84.4%
1v5oA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 31.0 3.43e-01 77.6% 73.5%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1760706 3070.2.1.1 a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain › Plug 0.84 69.0 6.61e-01 85.1% 82.6%
1716668 3070.2.1.1 a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain › Plug 0.83 68.0 6.74e-01 85.1% 88.3%
5082117 3070.2.1.0 a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain 0.83 66.0 6.98e-01 82.8% 98.3%
3969554 3070.2.1.0 a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain 0.82 65.0 6.76e-01 82.8% 100.0%
3967363 3070.2.1.1 a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain › Plug 0.82 67.0 6.68e-01 85.1% 85.2%
1718523 3070.2.1.1 a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain › Plug 0.82 67.0 6.83e-01 85.1% 90.6%
4492777 3070.2.1.1 a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain › Plug 0.81 65.0 6.24e-01 82.8% 90.7%
4007345 3070.2.1.1 a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain › Plug 0.81 65.0 6.51e-01 83.6% 86.7%
3967391 3070.2.1.1 a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain › Plug 0.81 64.0 6.59e-01 82.1% 96.8%
4078354 3070.2.1.1 a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain › Plug 0.80 65.0 6.64e-01 85.1% 92.3%
3967961 3070.2.1.1 a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain › Plug 0.80 65.0 6.70e-01 84.3% 93.6%
4870098 3070.2.1.1 a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain › Plug 0.79 58.0 6.20e-01 75.4% 100.0%
4185388 3070.2.1.1 a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain › Plug 0.78 63.0 6.53e-01 85.1% 98.4%
4307952 3070.2.1.1 a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain › Plug 0.77 62.0 6.29e-01 83.6% 93.1%
3964130 3070.2.1.1 a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain › Plug 0.77 59.0 5.82e-01 79.9% 88.6%
3838161 3070.2.1.1 a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain › Plug 0.76 60.0 5.87e-01 82.1% 94.5%
4878132 3070.2.1.1 a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain › Plug 0.75 61.0 5.93e-01 85.1% 97.3%
1883910 3070.2.1.1 a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain › Plug 0.75 58.0 5.64e-01 81.3% 100.0%
3838104 3070.2.1.1 a+b complex topology › N0 domain in phage tail proteins and secretins-like › TonB-dependent receptor plug domain › TonB-dependent receptor plug domain › Plug 0.73 57.0 5.96e-01 81.3% 95.8%
D2 medium residues 285-379_505-523_744-766
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4c92A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 31.0 3.24e-01 83.9% 56.9%
3by7E00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 31.0 3.99e-01 81.8% 100.0%
3ci0J02 2.10.70.20 Mainly Beta › Ribbon › Complement Module; domain 1 › gspk-gspi-gspj complex like domains 0.52 21.0 3.25e-01 92.0% 100.0%
1khbA03 3.90.228.20 Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › 0.52 36.0 2.95e-01 70.8% 94.0%
D3 medium residues 380-466_524-637
PDB
Domain cluster: representative
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1kmoA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.84 77.0 5.44e-01 100.0% 36.4%
4epaA00 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.82 74.0 4.99e-01 100.0% 29.4%
1fepA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.82 67.0 4.70e-01 100.0% 31.2%
2porA00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.81 58.0 4.91e-01 98.0% 48.2%
3qlbA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.79 77.0 5.40e-01 100.0% 39.0%
1by5A02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.78 75.0 5.25e-01 100.0% 43.0%
3cslA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.77 75.0 5.05e-01 100.0% 34.9%
6fokB01 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.75 73.0 4.92e-01 100.0% 32.5%
5fokA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.75 71.0 5.10e-01 100.0% 51.1%
2w16A03 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.75 72.0 5.06e-01 100.0% 39.6%
4fqeA00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.73 43.0 4.69e-01 94.5% 68.2%
1xkwA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.73 69.0 4.93e-01 99.0% 41.1%
5dl8A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.71 56.0 4.41e-01 99.5% 41.7%
3njtA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.70 52.0 4.47e-01 97.5% 49.7%
4aipC02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.69 65.0 4.62e-01 100.0% 37.2%
2f1cX00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.69 52.0 4.84e-01 100.0% 62.7%
2hdiA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.68 63.0 4.63e-01 100.0% 41.2%
6wimA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.68 57.0 4.59e-01 100.0% 47.8%
1uynX00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.68 56.0 4.97e-01 97.0% 62.0%
2vdfA00 2.40.128.100 Mainly Beta › Beta Barrel › Lipocalin › OPCA outer membrane adhesin/invasin 0.68 46.0 4.43e-01 85.1% 60.9%
1t16A00 2.40.160.60 Mainly Beta › Beta Barrel › Porin › Outer membrane protein transport protein (OMPP1/FadL/TodX) 0.67 61.0 4.69e-01 96.5% 55.5%
3v89A02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.66 63.0 4.38e-01 100.0% 40.1%
4gf4A00 2.40.160.180 Mainly Beta › Beta Barrel › Porin › Carbohydrate-selective porin OprB 0.66 48.0 4.19e-01 92.0% 50.5%
5dl7A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.66 57.0 4.46e-01 100.0% 45.5%
8p97A01 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.65 62.0 4.29e-01 100.0% 39.5%
2oojA00 2.40.350.10 Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like 0.65 38.0 4.67e-01 95.5% 87.8%
1nqfA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.65 60.0 4.62e-01 99.5% 46.7%
4afkA00 2.40.160.100 Mainly Beta › Beta Barrel › Porin › 0.64 60.0 4.62e-01 99.5% 50.2%
3sy9C01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.64 58.0 4.71e-01 100.0% 54.1%
3bryA00 2.40.160.60 Mainly Beta › Beta Barrel › Porin › Outer membrane protein transport protein (OMPP1/FadL/TodX) 0.63 58.0 4.69e-01 100.0% 65.0%
3sybA00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.63 58.0 4.46e-01 100.0% 46.8%
4frxA01 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.63 60.0 4.70e-01 99.5% 55.3%
5dl5A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.63 60.0 4.63e-01 100.0% 54.3%
2qomB00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.62 54.0 4.83e-01 97.0% 68.0%
3qq2B00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.61 55.0 5.13e-01 96.0% 84.4%
3kvnA02 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.61 56.0 4.77e-01 97.0% 66.6%
6wilA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.60 57.0 4.64e-01 100.0% 57.3%
4akrA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.60 38.0 4.39e-01 93.5% 85.7%
1qj8A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.59 40.0 4.65e-01 89.6% 92.6%
1af6A00 2.40.170.10 Mainly Beta › Beta Barrel › Maltoporin; Chain A › Porin, LamB type 0.59 55.0 4.27e-01 99.5% 54.2%
1i78B00 2.40.128.90 Mainly Beta › Beta Barrel › Lipocalin › OMPT-like 0.59 55.0 4.81e-01 98.0% 82.9%
3aa0B02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.59 40.0 4.48e-01 92.5% 88.4%
1a0sP00 2.40.170.10 Mainly Beta › Beta Barrel › Maltoporin; Chain A › Porin, LamB type 0.58 50.0 3.92e-01 97.5% 44.1%
4meeA00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.58 52.0 4.53e-01 97.0% 78.2%
2ervA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.57 35.0 4.08e-01 92.0% 82.7%
1lshA04 2.20.80.10 Mainly Beta › Single Sheet › Lipovitellin-phosvitin complex, chain A, domain 4 › Lipovitellin-phosvitin complex, chain A, domain 4 0.57 48.0 4.46e-01 88.1% 97.6%
7btxA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.56 53.0 4.35e-01 99.5% 60.3%
4c00A04 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.56 48.0 4.13e-01 98.0% 58.3%
2f1vA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.56 39.0 4.16e-01 82.6% 79.1%
1tlyA00 2.40.230.20 Mainly Beta › Beta Barrel › Outer membrane phospholipase (ompla); Chain C › Nucleoside-specific channel-forming protein, Tsx-like 0.55 43.0 3.97e-01 95.5% 64.1%
3fidA00 2.40.128.140 Mainly Beta › Beta Barrel › Lipocalin › Outer membrane protein 0.55 46.0 4.05e-01 88.6% 93.9%
4k3bA06 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.55 51.0 4.12e-01 99.0% 58.3%
1bxwA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.54 42.0 4.51e-01 92.5% 92.4%
3qtdA01 3.30.2290.10 Alpha Beta › 2-Layer Sandwich › PmbA/TldD fold › PmbA/TldD superfamily 0.52 39.0 3.75e-01 76.1% 77.2%
4e1sA00 2.40.160.160 Mainly Beta › Beta Barrel › Porin › Inverse autotransporter, beta-domain 0.52 47.0 4.38e-01 97.0% 79.8%
1fw3A00 2.40.230.10 Mainly Beta › Beta Barrel › Outer membrane phospholipase (ompla); Chain C › Phospholipase A1 0.52 43.0 4.04e-01 95.0% 71.6%
3gp6A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.51 32.0 3.65e-01 89.6% 81.3%
ECOD (74)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3947597 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.87 66.0 5.61e-01 100.0% 51.3%
3838163 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.82 79.0 5.46e-01 100.0% 39.8%
1760440 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.82 74.0 5.28e-01 100.0% 36.7%
3985117 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.82 79.0 5.45e-01 100.0% 41.3%
4538768 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.80 77.0 5.39e-01 100.0% 43.9%
2156904 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.80 77.0 6.13e-01 98.5% 65.8%
3070253 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.80 66.0 4.71e-01 100.0% 33.3%
3970531 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.78 75.0 5.13e-01 100.0% 38.4%
3971477 5084.5.3.0 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel 0.78 75.0 5.14e-01 100.0% 35.0%
4440914 5084.5.3.0 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel 0.78 75.0 5.01e-01 100.0% 33.1%
1717339 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.77 75.0 5.03e-01 100.0% 34.4%
2755875 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.75 73.0 5.15e-01 100.0% 38.6%
3968958 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.75 72.0 4.98e-01 100.0% 51.0%
4132216 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.74 71.0 4.82e-01 100.0% 34.6%
4371754 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.71 68.0 4.74e-01 100.0% 44.9%
4591311 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.71 67.0 4.41e-01 100.0% 90.6%
4449332 5084.5.1.18 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › BCSC_C 0.71 56.0 4.66e-01 97.5% 48.1%
3055859 5084.5.3.0 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel 0.69 66.0 4.30e-01 100.0% 33.5%
885 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.68 56.0 4.97e-01 97.0% 62.0%
1883909 5084.5.3.0 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel 0.67 63.0 4.28e-01 100.0% 35.2%
4371295 5084.5.1.0 beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.66 58.0 4.23e-01 98.5% 35.8%
4356082 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.66 61.0 5.08e-01 97.0% 65.5%
4135567 5084.5.1.5 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › ShlB 0.66 56.0 4.43e-01 100.0% 46.3%
4217278 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.66 60.0 5.05e-01 97.0% 68.3%
3965061 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.65 58.0 5.27e-01 96.5% 71.5%
4393174 5084.5.1.5 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › ShlB 0.65 56.0 4.47e-01 99.5% 47.4%
4618904 5084.5.1.5 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › ShlB 0.65 56.0 4.45e-01 99.5% 47.1%
1933289 5084.5.3.0 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel 0.65 61.0 4.00e-01 100.0% 53.6%
2719886 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.65 60.0 3.93e-01 98.0% 41.4%
3964588 5084.5.1.5 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › ShlB 0.64 57.0 4.84e-01 100.0% 59.6%
4669372 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.64 59.0 5.00e-01 96.0% 64.5%
4339003 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.63 58.0 4.99e-01 96.0% 65.7%
3511259 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.63 58.0 5.05e-01 97.5% 80.3%
4054559 5084.10.1.1 beta barrels › Outer membrane meander beta-barrels › LPS-assembly protein LptD › LPS-assembly protein LptD › LptD 0.63 60.0 4.29e-01 100.0% 42.6%
4377115 5084.3.1.0 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter 0.63 56.0 3.49e-01 97.5% 17.7%
5080405 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.63 43.0 4.80e-01 84.6% 85.4%
4643284 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.63 58.0 4.91e-01 97.0% 64.2%
4652602 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.63 57.0 4.83e-01 96.5% 66.3%
4039744 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.63 58.0 4.82e-01 97.0% 62.8%
3164124 5084.1.1.4 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Opacity 0.62 35.0 4.51e-01 73.1% 92.5%
4347483 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.62 57.0 4.61e-01 96.0% 55.8%
4010029 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.62 55.0 4.70e-01 98.0% 61.0%
3838102 5084.10.1.1 beta barrels › Outer membrane meander beta-barrels › LPS-assembly protein LptD › LPS-assembly protein LptD › LptD 0.62 58.0 4.36e-01 100.0% 53.9%
4195943 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.62 56.0 4.71e-01 96.5% 65.5%
3164364 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.61 51.0 4.49e-01 96.0% 60.9%
4885978 5084.5.1.2 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.61 57.0 4.72e-01 99.0% 60.0%
4234836 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.61 56.0 4.77e-01 97.0% 73.8%
4304754 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.60 55.0 4.75e-01 97.5% 63.9%
4679157 5084.5.1.5 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › ShlB 0.60 57.0 4.49e-01 98.5% 61.1%
3971932 5084.3.1.0 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter 0.60 54.0 3.78e-01 96.5% 33.4%
3967762 5084.5.1.5 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › ShlB 0.59 55.0 4.39e-01 98.5% 52.1%
4278291 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.59 53.0 4.58e-01 97.0% 65.8%
4009893 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.59 53.0 4.63e-01 96.5% 75.7%
3969607 5084.1.1.11 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Phenol_MetA_deg 0.58 53.0 4.51e-01 96.5% 76.8%
3398781 5087.3.1.2 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › MTP_lip_bd 0.57 49.0 4.36e-01 93.0% 63.9%
3236032 5084.5.3.0 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel 0.57 52.0 3.71e-01 96.0% 40.9%
3840054 5084.1.1.15 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP 0.56 36.0 4.22e-01 82.6% 90.7%
3235255 5087.3.1.1 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › Vit_open_b-sht 0.56 46.0 3.78e-01 84.1% 50.0%
4285298 5084.1.1.29 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › PF27340 0.56 37.0 3.84e-01 83.1% 69.5%
3235810 5087.3.1.2 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › MTP_lip_bd 0.56 45.0 4.08e-01 87.1% 62.2%
3839133 5084.5.1.2 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.56 52.0 4.13e-01 99.5% 63.1%
4490044 5084.3.1.1 beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.56 51.0 4.47e-01 96.5% 69.8%
3165475 5084.1.1.4 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Opacity 0.55 40.0 4.46e-01 88.6% 93.0%
3515710 5084.5.1.2 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.55 52.0 4.30e-01 99.5% 67.5%
3616128 5087.3.1.2 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › MTP_lip_bd 0.55 46.0 4.11e-01 93.0% 64.2%
3803010 5084.5.1.2 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.54 50.0 4.60e-01 98.0% 77.6%
3839919 5084.1.1.15 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP 0.54 41.0 3.99e-01 83.6% 70.8%
3717466 4051.1.1.1 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.53 43.0 4.45e-01 92.5% 88.9%
3493155 5087.3.1.2 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › MTP_lip_bd 0.53 46.0 3.94e-01 93.0% 61.5%
3970589 5084.5.1.2 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Omp85 0.53 49.0 4.09e-01 100.0% 60.1%
4116729 5084.1.1.6 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › OprF 0.52 38.0 4.09e-01 89.6% 87.1%
4670128 5087.3.1.1 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1C › Lipovitellin LV-1C › Vit_open_b-sht 0.52 39.0 3.74e-01 77.1% 67.8%
3838321 5084.1.1.15 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP 0.51 40.0 3.97e-01 82.6% 76.1%
3838382 5084.1.1.15 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP 0.51 41.0 3.79e-01 97.0% 66.0%
D4 medium residues 638-743
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4epaA00 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.78 73.0 4.42e-01 100.0% 79.6%
3efmA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.75 62.0 4.06e-01 87.7% 40.8%
2w16A03 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.75 67.0 4.17e-01 96.2% 29.1%
1xkwA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.73 65.0 4.08e-01 96.2% 40.7%
2f86B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.69 43.0 4.04e-01 84.9% 51.9%
3robA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 45.0 4.16e-01 89.6% 55.0%
4eg9A00 2.50.20.40 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.66 44.0 3.42e-01 85.8% 30.7%
2f1cX00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.64 58.0 4.40e-01 100.0% 76.6%
6f1uK02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.62 41.0 3.74e-01 74.5% 49.0%
4gf4A00 2.40.160.180 Mainly Beta › Beta Barrel › Porin › Carbohydrate-selective porin OprB 0.62 52.0 3.73e-01 90.6% 45.5%
4l8oA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 45.0 3.87e-01 89.6% 48.8%
5ig0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 40.0 3.74e-01 87.7% 53.4%
4ccvA00 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 39.0 3.85e-01 71.7% 60.0%
3kspA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 39.0 3.72e-01 89.6% 54.3%
3ef8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 43.0 3.87e-01 88.7% 53.4%
1pp0B00 3.40.198.10 Alpha Beta › 3-Layer(aba) Sandwich › Delta-endotoxin CytB › Delta-endotoxin CytB-like 0.59 42.0 3.46e-01 74.5% 92.8%
3e99A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 41.0 3.69e-01 88.7% 53.4%
2b1xB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 41.0 3.55e-01 90.6% 48.5%
2r4iA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 36.0 3.43e-01 87.7% 55.3%
3fsdA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 36.0 3.48e-01 83.0% 57.9%
2w3sB04 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.55 42.0 3.37e-01 80.2% 77.8%
4rlcA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.55 40.0 3.73e-01 86.8% 60.0%
5bkaE01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 36.0 3.39e-01 85.8% 53.8%
2ervA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.55 50.0 4.45e-01 100.0% 84.7%
3eyrA00 3.15.10.40 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Uncharacterised protein PF07273 family, DUF1439 0.55 40.0 3.39e-01 91.5% 47.3%
2rckA01 3.15.10.30 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › TULIP domain 0.55 49.0 3.89e-01 100.0% 62.4%
1idpA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 40.0 3.64e-01 89.6% 56.5%
3aa0B02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.54 41.0 3.59e-01 80.2% 79.4%
3f7xA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 37.0 3.50e-01 87.7% 58.6%
4x2oA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 43.0 3.59e-01 88.7% 82.1%
5azsA02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.51 33.0 3.70e-01 75.5% 83.1%
3a76A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 42.0 3.88e-01 88.7% 82.0%
4kghA00 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.51 45.0 3.73e-01 98.1% 59.1%
2r5rA00 3.10.270.10 Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; 0.51 43.0 3.38e-01 96.2% 72.4%
3d9rB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 41.0 3.79e-01 85.8% 82.0%
4fuvA00 2.40.160.170 Mainly Beta › Beta Barrel › Porin › 0.51 44.0 3.54e-01 97.2% 70.9%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3839880 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.81 72.0 4.40e-01 95.3% 25.9%
1718522 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.73 65.0 4.08e-01 96.2% 40.8%
2156904 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.72 60.0 4.09e-01 88.7% 44.7%
3100974 5084.5.3.0 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel 0.70 58.0 4.58e-01 87.7% 47.6%
3965708 5084.5.4.5 beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › SlipAM 0.69 62.0 4.67e-01 97.2% 64.6%
3942050 5084.5.2.1 beta barrels › Outer membrane meander beta-barrels › Porins › Maltoporin-like › LamB 0.67 59.0 4.22e-01 96.2% 82.6%
3278632 243.1.1.26 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.66 44.0 4.08e-01 90.6% 53.3%
3750494 883.1.1.0 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.64 45.0 3.59e-01 72.6% 38.0%
3875620 883.1.1.1 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.64 45.0 3.68e-01 72.6% 41.1%
4505397 5087.1.1.0 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-2 › Lipovitellin LV-2 0.63 49.0 3.70e-01 82.1% 45.4%
1094951 243.1.1.26 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.62 45.0 3.87e-01 89.6% 48.8%
4884000 243.1.1.1 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Ring_hydroxyl_B 0.61 44.0 3.90e-01 95.3% 51.3%
4946087 283.2.1.0 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.61 48.0 4.49e-01 82.1% 100.0%
4011472 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.60 47.0 3.96e-01 92.5% 48.9%
3553322 5089.1.1.3 beta complex topology › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Gasdermin 0.59 42.0 3.20e-01 72.6% 51.8%
3808882 4051.1.1.1 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.58 43.0 3.69e-01 78.3% 74.3%
4367390 5084.8.1.1 beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore › Usher 0.58 53.0 3.46e-01 100.0% 41.5%
3283278 243.1.1.26 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.58 40.0 3.69e-01 89.6% 54.8%
3276558 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.58 44.0 3.20e-01 81.1% 81.9%
4025861 4051.1.1.1 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F_actin_cap_B 0.56 42.0 3.61e-01 79.2% 75.3%
3764436 883.1.1.1 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.56 48.0 4.10e-01 99.1% 57.7%
4593105 243.1.1.3 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Scytalone_dh 0.56 41.0 3.94e-01 97.2% 66.4%
4668983 4051.1.1.0 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz 0.55 42.0 3.64e-01 80.2% 75.6%
3588483 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.55 38.0 3.56e-01 85.8% 56.7%
4622159 5084.5.1.35 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_2 0.54 50.0 3.46e-01 100.0% 44.7%
3530920 883.1.1.1 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.54 48.0 3.87e-01 99.1% 64.4%
4823574 4030.1.1.1 alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › F_actin_cap_B 0.53 43.0 3.78e-01 86.8% 64.7%
3541529 883.1.1.15 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP+LBP_BPI_CETP_C 0.52 45.0 3.02e-01 96.2% 29.1%
3760087 883.1.1.1 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.52 45.0 3.64e-01 96.2% 78.0%
4647627 883.1.1.1 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.51 45.0 3.62e-01 99.1% 57.7%
3732871 243.1.1.26 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.51 46.0 3.87e-01 100.0% 80.3%
6405 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.51 41.0 3.79e-01 85.8% 82.6%
1566590 243.1.1.40 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NXF_NTF2 0.50 42.0 3.38e-01 88.7% 80.3%
4025435 4051.1.1.2 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.50 44.0 3.70e-01 100.0% 73.2%
3773175 883.1.1.1 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.50 44.0 3.69e-01 98.1% 56.2%
D5 medium residues 767-870
PDB
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1by5A02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.89 85.0 5.13e-01 100.0% 19.9%
5fokA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.88 82.0 5.01e-01 100.0% 19.1%
2w16A03 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.86 82.0 4.99e-01 100.0% 20.6%
1xkwA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.86 82.0 5.00e-01 100.0% 20.3%
1kmoA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.86 81.0 4.99e-01 100.0% 22.2%
4epaA00 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.86 81.0 4.85e-01 100.0% 17.1%
3qlbA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.85 80.0 4.91e-01 100.0% 20.6%
6fokB01 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.80 74.0 4.47e-01 99.0% 18.5%
4aipC02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.73 67.0 4.19e-01 100.0% 27.1%
1bt9A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.70 64.0 4.40e-01 100.0% 30.6%
2porA00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.66 59.0 4.21e-01 99.0% 33.9%
2qomB00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.63 55.0 4.10e-01 98.1% 45.0%
3njtA01 2.40.160.50 Mainly Beta › Beta Barrel › Porin › membrane protein fhac: a member of the omp85/tpsb transporter family 0.62 57.0 4.06e-01 100.0% 35.5%
1uynX00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.61 54.0 3.98e-01 98.1% 40.5%
2oojA00 2.40.350.10 Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like 0.59 42.0 3.94e-01 88.5% 59.5%
3qq2B00 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.58 52.0 3.91e-01 98.1% 42.0%
1fx3B00 3.10.420.10 Alpha Beta › Roll › Bacterial Protein-export protein SecB › SecB-like 0.55 45.0 3.99e-01 86.5% 63.1%
1sjwA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 37.0 3.36e-01 77.9% 50.7%
6a5gA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 40.0 3.66e-01 84.6% 57.4%
3ehcB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 36.0 3.40e-01 77.9% 54.7%
1p4tA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.55 44.0 3.85e-01 90.4% 57.4%
5f1mA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.54 47.0 3.56e-01 96.2% 91.3%
3kkgA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 36.0 3.27e-01 78.8% 49.3%
4lgqA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 35.0 3.23e-01 77.9% 52.6%
3f9sB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 36.0 3.26e-01 76.0% 51.8%
3p02A02 2.40.128.440 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14274, DUF4361 0.52 43.0 3.81e-01 96.2% 59.6%
1qj8A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.52 43.0 3.88e-01 92.3% 64.2%
3dzmB00 2.40.160.70 Mainly Beta › Beta Barrel › Porin › outer membrane protein from Thermus thermophilus HB27. 0.52 42.0 3.45e-01 89.4% 56.9%
2pslA00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.52 40.0 3.18e-01 83.7% 97.2%
4en2A02 2.60.40.1170 Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B 0.50 35.0 3.57e-01 81.7% 73.1%
2gexA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 40.0 3.60e-01 87.5% 61.0%
4ba0A04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.50 44.0 3.87e-01 95.2% 92.6%
4g56A03 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.50 42.0 3.62e-01 93.3% 73.7%
4uv3E01 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.50 42.0 3.39e-01 91.3% 63.5%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3971984 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.93 83.0 5.20e-01 100.0% 21.1%
3965126 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.91 85.0 5.54e-01 98.1% 27.7%
1828692 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.90 84.0 5.05e-01 100.0% 17.8%
2393529 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.89 85.0 5.18e-01 100.0% 19.9%
1758278 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.89 85.0 5.15e-01 100.0% 19.9%
3968958 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.88 84.0 5.05e-01 100.0% 19.4%
4865042 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.87 83.0 5.16e-01 100.0% 21.2%
4440914 5084.5.3.0 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel 0.87 83.0 4.90e-01 100.0% 16.7%
3978918 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.87 81.0 4.96e-01 98.1% 20.0%
1760440 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.86 81.0 5.03e-01 100.0% 21.3%
1761798 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.85 80.0 4.91e-01 100.0% 20.6%
3489191 5084.5.1.3 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 0.82 56.0 3.97e-01 96.2% 25.3%
2755875 5084.5.3.1 beta barrels › Outer membrane meander beta-barrels › Porins › Ligand-gated protein channel › TonB_dep_Rec_b-barrel 0.79 73.0 4.55e-01 100.0% 22.3%
4619594 5084.6.1.1 beta barrels › Outer membrane meander beta-barrels › Tsx-like channel › Tsx-like channel › Channel_Tsx 0.69 62.0 4.60e-01 98.1% 40.8%
2410295 5084.5.4.3 beta barrels › Outer membrane meander beta-barrels › Porins › Outer membrane protein transport protein › PorV 0.67 61.0 4.73e-01 100.0% 48.0%
5069722 2484.1.1.59 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.61 47.0 3.36e-01 83.7% 48.8%
4927081 5084.1.1.0 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.58 43.0 3.86e-01 91.3% 55.2%
4931020 2484.1.1.59 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.58 46.0 3.20e-01 84.6% 45.1%
4000635 331.3.1.6 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PRELI 0.57 44.0 3.70e-01 92.3% 47.8%
4974124 243.1.1.10 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL 0.57 37.0 3.39e-01 78.8% 50.0%
5080098 2484.1.1.59 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › NurA 0.56 46.0 3.28e-01 98.1% 28.2%
4863404 243.1.1.10 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL 0.56 38.0 3.44e-01 78.8% 51.8%
4980058 243.1.1.10 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL 0.55 37.0 3.38e-01 78.8% 52.6%
3255190 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.55 36.0 3.65e-01 70.2% 68.3%
4927499 243.1.1.10 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL 0.54 37.0 3.13e-01 78.8% 43.6%
3970325 243.1.1.10 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL 0.54 37.0 3.35e-01 78.8% 52.1%
137314 243.1.1.10 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL 0.54 36.0 3.28e-01 79.8% 50.0%
3540942 883.1.1.10 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › SMP_C2CD2L 0.54 46.0 3.74e-01 92.3% 63.7%
3592958 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.53 41.0 2.95e-01 83.7% 78.0%
2163935 243.1.1.10 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL 0.53 37.0 3.41e-01 82.7% 55.6%
4025179 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.53 47.0 3.81e-01 99.0% 53.2%
4878195 243.1.1.10 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL 0.53 35.0 3.51e-01 77.9% 64.5%
4020798 883.1.1.0 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.53 45.0 3.49e-01 96.2% 63.3%
5071439 243.1.1.10 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL 0.52 37.0 3.43e-01 83.7% 56.1%
3743876 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.52 47.0 3.66e-01 100.0% 49.5%
2443846 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.52 39.0 3.48e-01 81.7% 58.0%
3773744 883.1.1.1 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.51 44.0 3.83e-01 96.2% 71.5%
3718042 5.1.3.28 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.51 38.0 2.62e-01 81.7% 55.6%
5048348 3080.1.1.0 a+b complex topology › Necrosis and ethylene-inducing peptide 1-like proteins › Necrosis and ethylene-inducing peptide 1-like proteins › Necrosis and ethylene-inducing peptide 1-like proteins 0.51 44.0 3.55e-01 95.2% 53.5%