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CAKLQF020000015.1__CAH1087629.1__SAMEA5780031_02773__00093
Bact-VirCAKLQF020000015.1__CAH1087629.1__SAMEA5780031_02773__00093
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 24-200
Domain cluster:
rep: NC_021330__YP_008059651.1__M202-gp129__00089__D21-171
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF14532.13 best | Sigma54_activ_2 | 53.3 | 5.40e-14 | 96.0% | 97.1% |
| PF00158.33 | Sigma54_activat | 235.2 | 4.80e-70 | 94.9% | 99.4% |
| PF07728.21 | AAA_5 | 29.1 | 1.30e-06 | 75.1% | 74.8% |
D2
high
residues 210-269
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF25601.2 best | AAA_lid_14 | 61.2 | 9.60e-17 | 100.0% | 69.0% |
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5m7oA03 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.91 | 84.0 | 7.30e-01 | 100.0% | 73.6% |
| 5ep0A03 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.88 | 80.0 | 7.63e-01 | 100.0% | 85.7% |
| 5expA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.85 | 78.0 | 7.10e-01 | 100.0% | 77.9% |
| 7krzA02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.73 | 63.0 | 5.74e-01 | 100.0% | 91.7% |
| 1sxjE02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.70 | 56.0 | 5.56e-01 | 100.0% | 84.4% |
| 3u60E02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.66 | 47.0 | 4.78e-01 | 93.3% | 78.0% |
| 1z8hA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.64 | 51.0 | 3.59e-01 | 91.7% | 87.6% |
| 5ig2A00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.63 | 55.0 | 3.60e-01 | 100.0% | 84.9% |
| 1z8fA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.63 | 47.0 | 3.83e-01 | 83.3% | 86.0% |
| 4h0aA00 | 3.40.33.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pathogenesis-related Protein p14a › CAP | 0.61 | 51.0 | 3.37e-01 | 100.0% | 37.0% |
| 1y1pA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.61 | 52.0 | 3.30e-01 | 100.0% | 76.1% |
| 4wsiB03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 46.0 | 3.29e-01 | 86.7% | 80.7% |
| 1yp1A00 | 3.40.390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) | 0.60 | 47.0 | 3.37e-01 | 90.0% | 81.4% |
| 2z1dA01 | 3.40.50.11750 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HypD, alpha/beta domain 1 | 0.55 | 46.0 | 3.52e-01 | 93.3% | 83.7% |
| 7kseA02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.55 | 38.0 | 2.87e-01 | 90.0% | 30.1% |
| 1qx1A01 | 3.20.110.10 | Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain | 0.54 | 43.0 | 2.63e-01 | 86.7% | 70.1% |
| 1lbqA02 | 3.40.50.1400 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 36.0 | 2.85e-01 | 71.7% | 77.0% |
| 2x0kA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.53 | 37.0 | 2.59e-01 | 73.3% | 64.5% |
| 4loaA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 40.0 | 2.99e-01 | 83.3% | 90.5% |
| 2bdtA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 36.0 | 2.64e-01 | 75.0% | 42.1% |
| 1f20A01 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.50 | 39.0 | 2.82e-01 | 90.0% | 30.7% |
| 2goyA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.50 | 37.0 | 2.67e-01 | 86.7% | 29.7% |
ECOD (61)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3972496 | 148.1.3.172 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_14 | 0.97 | 92.0 | 8.19e-01 | 100.0% | 75.0% |
| 4533158 | 148.1.3.172 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_14 | 0.96 | 92.0 | 7.64e-01 | 100.0% | 63.2% |
| 3969407 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.96 | 92.0 | 7.94e-01 | 100.0% | 70.6% |
| 3945134 | 148.1.3.172 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_14 | 0.96 | 91.0 | 7.57e-01 | 100.0% | 69.5% |
| 3967285 | 148.1.3.172 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_14 | 0.96 | 91.0 | 7.91e-01 | 100.0% | 70.6% |
| 3387009 | 148.1.3.172 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_14 | 0.96 | 91.0 | 7.88e-01 | 100.0% | 70.6% |
| 3974164 | 148.1.3.172 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_14 | 0.95 | 91.0 | 7.54e-01 | 100.0% | 63.2% |
| 4438929 | 148.1.3.172 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_14 | 0.95 | 90.0 | 7.67e-01 | 100.0% | 73.3% |
| 4133358 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.95 | 91.0 | 6.41e-01 | 100.0% | 38.7% |
| 4589579 | 148.1.3.172 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_14 | 0.94 | 78.0 | 7.14e-01 | 100.0% | 69.3% |
| 4008729 | 148.1.3.172 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_14 | 0.94 | 88.0 | 7.25e-01 | 100.0% | 61.0% |
| 3949333 | 148.1.3.172 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_14 | 0.94 | 77.0 | 6.91e-01 | 100.0% | 65.0% |
| 3942061 | 148.1.3.172 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_14 | 0.94 | 89.0 | 7.55e-01 | 100.0% | 66.7% |
| 3971889 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.94 | 89.0 | 7.55e-01 | 100.0% | 75.6% |
| 3942220 | 148.1.3.172 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_14 | 0.94 | 88.0 | 8.09e-01 | 100.0% | 80.0% |
| 3964632 | 148.1.3.172 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_14 | 0.94 | 88.0 | 7.67e-01 | 100.0% | 70.6% |
| 3964387 | 148.1.3.172 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_14 | 0.94 | 86.0 | 7.63e-01 | 100.0% | 72.5% |
| 4205760 | 148.1.3.172 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_14 | 0.93 | 86.0 | 8.12e-01 | 100.0% | 84.3% |
| 4512916 | 148.1.3.172 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_14 | 0.93 | 86.0 | 7.67e-01 | 100.0% | 73.8% |
| 4603527 | 148.1.3.172 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_14 | 0.93 | 86.0 | 7.55e-01 | 100.0% | 71.8% |
| 4180526 | 148.1.3.172 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_14 | 0.93 | 85.0 | 6.78e-01 | 100.0% | 53.6% |
| 3946952 | 148.1.3.172 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_14 | 0.92 | 86.0 | 6.97e-01 | 100.0% | 57.1% |
| 3972782 | 148.1.3.172 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_14 | 0.92 | 85.0 | 7.42e-01 | 100.0% | 69.4% |
| 4406331 | 148.1.3.172 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_14 | 0.92 | 84.0 | 7.18e-01 | 100.0% | 65.6% |
| 3944882 | 148.1.3.172 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_14 | 0.91 | 84.0 | 7.33e-01 | 100.0% | 69.4% |
| 4658828 | 148.1.3.172 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_14 | 0.91 | 85.0 | 7.27e-01 | 100.0% | 66.7% |
| 52266 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.91 | 84.0 | 7.70e-01 | 100.0% | 78.9% |
| 4217970 | 148.1.3.172 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_14 | 0.91 | 84.0 | 7.22e-01 | 100.0% | 66.7% |
| 2060239 | 148.1.3.172 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_14 | 0.91 | 84.0 | 7.02e-01 | 100.0% | 66.0% |
| 1320172 | 148.1.3.172 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_14 | 0.90 | 84.0 | 7.10e-01 | 100.0% | 67.7% |
| 4010022 | 148.1.3.172 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_14 | 0.90 | 84.0 | 7.71e-01 | 100.0% | 80.0% |
| 4383366 | 148.1.3.172 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_14 | 0.90 | 83.0 | 7.26e-01 | 100.0% | 72.9% |
| 4417619 | 148.1.3.172 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_14 | 0.90 | 83.0 | 7.12e-01 | 100.0% | 72.2% |
| 3947780 | 148.1.3.172 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_14 | 0.90 | 83.0 | 6.64e-01 | 100.0% | 54.5% |
| 4055091 | 148.1.3.172 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_14 | 0.89 | 76.0 | 7.24e-01 | 100.0% | 80.0% |
| 3945736 | 148.1.3.172 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_14 | 0.88 | 81.0 | 6.40e-01 | 100.0% | 57.4% |
| 3590402 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.87 | 80.0 | 6.76e-01 | 100.0% | 69.5% |
| 1724090 | 148.1.3.172 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_14 | 0.85 | 77.0 | 6.98e-01 | 100.0% | 75.9% |
| 3975670 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.85 | 76.0 | 6.49e-01 | 100.0% | 71.6% |
| 3943207 | 148.1.3.172 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_14 | 0.81 | 72.0 | 6.70e-01 | 100.0% | 78.7% |
| 4981559 | 148.1.3.42 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › RCF1-5-like_lid | 0.78 | 63.0 | 6.18e-01 | 100.0% | 81.5% |
| 5003869 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.77 | 61.0 | 6.00e-01 | 100.0% | 80.0% |
| 3520054 | 148.1.3.173 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_RFC1 | 0.76 | 61.0 | 5.96e-01 | 100.0% | 81.5% |
| 3787666 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.75 | 65.0 | 5.47e-01 | 100.0% | 79.0% |
| 3606787 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.73 | 63.0 | 5.16e-01 | 100.0% | 61.7% |
| 3080986 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.69 | 54.0 | 5.33e-01 | 100.0% | 84.1% |
| 3098681 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.68 | 55.0 | 4.86e-01 | 100.0% | 59.6% |
| 5076250 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.67 | 53.0 | 4.94e-01 | 100.0% | 70.7% |
| 4970674 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.65 | 51.0 | 5.19e-01 | 100.0% | 88.3% |
| 3369943 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.65 | 55.0 | 4.75e-01 | 98.3% | 70.0% |
| 3973267 | 2004.1.1.202 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_28 | 0.63 | 48.0 | 3.50e-01 | 83.3% | 91.2% |
| 224049 | 273.1.1.1 ↗ | a+b three layers › PR-1-like › PR-1-like › PR-1-like › CAP | 0.61 | 51.0 | 4.19e-01 | 100.0% | 88.5% |
| 4989677 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.59 | 43.0 | 3.15e-01 | 80.0% | 53.1% |
| 3324497 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.59 | 41.0 | 3.35e-01 | 90.0% | 38.3% |
| 3456221 | 2004.1.1.163 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › KTI12 | 0.56 | 39.0 | 3.35e-01 | 71.7% | 81.1% |
| 3926170 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.55 | 39.0 | 3.34e-01 | 86.7% | 47.4% |
| 3319380 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.53 | 45.0 | 3.74e-01 | 98.3% | 88.2% |
| 4994951 | 2006.1.4.13 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_9 | 0.52 | 41.0 | 3.21e-01 | 86.7% | 80.8% |
| 3680511 | 2484.1.1.26 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi | 0.52 | 44.0 | 3.10e-01 | 100.0% | 94.8% |
| 4253527 | 2005.1.1.13 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › CTP_transf_like | 0.51 | 35.0 | 2.49e-01 | 71.7% | 92.0% |
| 5055988 | 2006.1.4.13 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_9 | 0.51 | 39.0 | 3.20e-01 | 86.7% | 86.7% |
D3
high
residues 284-346
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02954.26 best | HTH_8 | 23.1 | 6.80e-05 | 61.9% | 88.1% |
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2esnA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.89 | 56.0 | 4.91e-01 | 73.0% | 46.1% |
| 2m8gX00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.87 | 65.0 | 6.23e-01 | 81.0% | 70.0% |
| 1etkA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.85 | 78.0 | 7.34e-01 | 100.0% | 96.0% |
| 3e7lA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.84 | 68.0 | 7.00e-01 | 85.7% | 90.0% |
| 1ojlA03 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.83 | 58.0 | 6.60e-01 | 85.7% | 97.9% |
| 3onqA03 | 1.10.10.2840 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PucR C-terminal helix-turn-helix domain | 0.83 | 54.0 | 4.13e-01 | 79.4% | 32.1% |
| 2o38A01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.78 | 53.0 | 5.32e-01 | 71.4% | 69.2% |
| 6jqsA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.76 | 50.0 | 4.90e-01 | 73.0% | 62.7% |
| 1umqA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.73 | 51.0 | 5.23e-01 | 73.0% | 78.3% |
| 4izzB02 | 1.10.10.1680 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › HetR, N-terminal DNA-binding domain | 0.73 | 51.0 | 5.02e-01 | 74.6% | 75.0% |
| 5fgmA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 47.0 | 4.71e-01 | 79.4% | 64.6% |
| 2dbbB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.73 | 49.0 | 5.17e-01 | 73.0% | 80.0% |
| 3vfzB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 49.0 | 4.95e-01 | 73.0% | 71.4% |
| 3bddD00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 52.0 | 4.04e-01 | 82.5% | 38.6% |
| 5hxgB00 | 1.10.4000.10 | Mainly Alpha › Orthogonal Bundle › Flagellar transcriptional activator fold › Flagellar transcriptional activator FlhD | 0.67 | 47.0 | 4.66e-01 | 81.0% | 70.8% |
| 3ecoB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 54.0 | 4.32e-01 | 90.5% | 45.7% |
| 2qwwC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 57.0 | 4.52e-01 | 100.0% | 46.4% |
| 4em2A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 56.0 | 4.25e-01 | 95.2% | 40.7% |
| 5eriA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 54.0 | 4.00e-01 | 88.9% | 37.3% |
| 7vjmB01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.64 | 42.0 | 4.26e-01 | 84.1% | 67.2% |
| 1lj9B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 52.0 | 4.01e-01 | 88.9% | 40.1% |
| 8dtqA01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.64 | 43.0 | 3.98e-01 | 73.0% | 53.7% |
| 1lnwF01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 57.0 | 4.55e-01 | 100.0% | 50.8% |
| 3op9A01 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.64 | 40.0 | 3.96e-01 | 73.0% | 58.8% |
| 2nyxB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 56.0 | 4.32e-01 | 100.0% | 44.4% |
| 4pu7A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.62 | 43.0 | 4.15e-01 | 85.7% | 63.4% |
| 3zh9B03 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.61 | 54.0 | 4.30e-01 | 98.4% | 73.0% |
| 4ghjB00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.61 | 42.0 | 4.00e-01 | 73.0% | 60.5% |
| 2lfwA01 | 1.20.140.160 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain | 0.61 | 53.0 | 4.12e-01 | 100.0% | 75.9% |
| 4rgxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 49.0 | 4.03e-01 | 100.0% | 50.7% |
| 4yg1A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.60 | 40.0 | 3.93e-01 | 85.7% | 62.5% |
| 1jhgA00 | 1.10.1270.10 | Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › TrpR-like | 0.59 | 42.0 | 3.72e-01 | 77.8% | 54.5% |
| 2e18A00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.59 | 50.0 | 3.36e-01 | 96.8% | 91.0% |
| 1y7yA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.58 | 39.0 | 3.84e-01 | 73.0% | 65.2% |
| 2yn7A00 | 1.10.3160.10 | Mainly Alpha › Orthogonal Bundle › Bbcrasp-1 › Bbcrasp-1 | 0.54 | 41.0 | 2.85e-01 | 82.5% | 52.3% |
| 5xe7A01 | 1.20.140.160 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › PhyR, sigma-like (SL) domain | 0.54 | 45.0 | 3.57e-01 | 98.4% | 80.3% |
| 3i71B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 37.0 | 3.85e-01 | 82.5% | 79.3% |
| 3b7hA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.52 | 34.0 | 3.29e-01 | 73.0% | 56.6% |
ECOD (57)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3980686 | 101.1.1.18 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 | 0.94 | 65.0 | 7.26e-01 | 71.4% | 92.0% |
| 3971281 | 101.1.1.18 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 | 0.94 | 69.0 | 7.38e-01 | 76.2% | 89.1% |
| 3986709 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.93 | 68.0 | 7.01e-01 | 76.2% | 81.7% |
| 3949224 | 101.1.1.18 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 | 0.93 | 77.0 | 7.41e-01 | 87.3% | 78.6% |
| 3969664 | 101.1.1.18 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 | 0.91 | 64.0 | 6.28e-01 | 73.0% | 67.6% |
| 3970408 | 101.1.1.18 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 | 0.91 | 64.0 | 6.62e-01 | 73.0% | 80.0% |
| 4501735 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.91 | 82.0 | 7.71e-01 | 96.8% | 81.3% |
| 3984540 | 101.1.1.18 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 | 0.90 | 63.0 | 6.78e-01 | 81.0% | 83.6% |
| 4333531 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.90 | 63.0 | 7.05e-01 | 73.0% | 98.0% |
| 3980517 | 101.1.1.18 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 | 0.90 | 67.0 | 6.89e-01 | 79.4% | 81.7% |
| 4009103 | 101.1.1.18 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 | 0.90 | 65.0 | 6.74e-01 | 76.2% | 83.3% |
| 3969080 | 101.1.1.18 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 | 0.89 | 65.0 | 7.00e-01 | 85.7% | 87.3% |
| 3946248 | 101.1.3.4 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 | 0.89 | 61.0 | 5.12e-01 | 73.0% | 45.0% |
| 4642479 | 101.1.3.4 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 | 0.89 | 60.0 | 5.12e-01 | 73.0% | 46.3% |
| 4342882 | 101.1.1.18 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 | 0.89 | 67.0 | 6.92e-01 | 79.4% | 85.0% |
| None | — | 0.88 | 74.0 | 7.20e-01 | 88.9% | 100.0% | |
| 3961692 | 101.1.1.300 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_30 | 0.88 | 59.0 | 5.07e-01 | 73.0% | 46.3% |
| 3982095 | 101.1.3.4 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 | 0.88 | 60.0 | 4.99e-01 | 73.0% | 44.9% |
| 3944389 | 101.1.3.4 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 | 0.88 | 59.0 | 5.29e-01 | 73.0% | 51.8% |
| 4178355 | 101.1.3.4 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 | 0.88 | 59.0 | 4.95e-01 | 73.0% | 44.0% |
| 4169757 | 101.1.1.18 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 | 0.87 | 74.0 | 7.34e-01 | 100.0% | 87.7% |
| 3282047 | 101.1.3.4 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 | 0.87 | 61.0 | 5.13e-01 | 73.0% | 46.0% |
| 3955106 | 101.1.3.4 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 | 0.87 | 58.0 | 5.12e-01 | 73.0% | 48.9% |
| 4342758 | 101.1.1.18 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 | 0.87 | 56.0 | 6.02e-01 | 87.3% | 76.4% |
| None | — | 0.87 | 78.0 | 6.83e-01 | 96.8% | 96.6% | |
| 4603528 | 101.1.1.18 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 | 0.86 | 70.0 | 6.56e-01 | 87.3% | 72.0% |
| 4282037 | 101.1.3.4 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 | 0.86 | 58.0 | 5.09e-01 | 73.0% | 48.9% |
| 4456382 | 101.1.1.18 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 | 0.86 | 79.0 | 6.90e-01 | 98.4% | 82.2% |
| 4480726 | 101.1.1.300 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_30 | 0.86 | 63.0 | 7.00e-01 | 81.0% | 96.0% |
| 3286796 | 101.1.3.4 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 | 0.85 | 59.0 | 5.02e-01 | 73.0% | 47.4% |
| 3974476 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.85 | 66.0 | 7.02e-01 | 81.0% | 94.5% |
| 3959391 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.85 | 56.0 | 5.42e-01 | 73.0% | 61.4% |
| 3280379 | 101.1.3.4 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 | 0.85 | 58.0 | 4.88e-01 | 73.0% | 45.0% |
| 4182256 | 101.1.1.18 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 | 0.85 | 78.0 | 6.58e-01 | 100.0% | 89.0% |
| 3286340 | 101.1.3.4 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 | 0.84 | 58.0 | 4.99e-01 | 73.0% | 48.4% |
| 152212 | 101.1.1.18 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 | 0.84 | 68.0 | 6.59e-01 | 85.7% | 80.9% |
| 3964673 | 101.1.1.18 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 | 0.83 | 77.0 | 6.63e-01 | 100.0% | 84.0% |
| 4359947 | 101.1.1.18 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 | 0.83 | 64.0 | 6.37e-01 | 81.0% | 90.8% |
| 4554905 | 101.1.1.18 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 | 0.83 | 67.0 | 6.89e-01 | 85.7% | 91.7% |
| 3987666 | 101.1.3.4 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 | 0.82 | 56.0 | 4.96e-01 | 73.0% | 51.8% |
| 3968355 | 101.1.1.18 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 | 0.82 | 63.0 | 6.67e-01 | 81.0% | 98.2% |
| 4659432 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.81 | 66.0 | 6.25e-01 | 87.3% | 74.7% |
| 3968335 | 101.1.1.18 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 | 0.81 | 66.0 | 6.78e-01 | 85.7% | 91.7% |
| 4471030 | 101.1.1.18 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 | 0.80 | 68.0 | 6.57e-01 | 90.5% | 85.7% |
| 3280215 | 101.1.3.4 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 | 0.79 | 56.0 | 4.78e-01 | 73.0% | 48.4% |
| 4133358 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.79 | 67.0 | 4.91e-01 | 100.0% | 36.8% |
| 4007629 | 101.1.1.18 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 | 0.79 | 72.0 | 6.94e-01 | 100.0% | 88.6% |
| 3964388 | 101.1.1.18 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 | 0.78 | 67.0 | 6.66e-01 | 92.1% | 93.8% |
| 3976869 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.76 | 63.0 | 6.49e-01 | 90.5% | 91.7% |
| 4132433 | 101.1.1.18 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › HTH_8 | 0.74 | 65.0 | 6.43e-01 | 100.0% | 93.8% |
| 3587618 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.71 | 50.0 | 4.60e-01 | 76.2% | 56.5% |
| 5063318 | 101.1.6.12 ↗ | alpha arrays › HTH › HTH › TrpR › HTH_23 | 0.68 | 46.0 | 4.84e-01 | 71.4% | 85.5% |
| 4950777 | 101.1.1.371 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › UPF0175 | 0.63 | 53.0 | 5.18e-01 | 98.4% | 84.3% |
| 4217329 | 4964.1.1.1 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A | 0.62 | 45.0 | 3.70e-01 | 79.4% | 45.0% |
| 4928584 | 109.4.1.5 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_1 | 0.61 | 50.0 | 3.48e-01 | 93.7% | 41.8% |
| 5013438 | 101.1.2.881 ↗ | alpha arrays › HTH › HTH › winged helix domain › UPF0175 | 0.60 | 51.0 | 5.26e-01 | 98.4% | 98.3% |
| 5051680 | 101.1.11.0 ↗ | alpha arrays › HTH › HTH › Ribbon-helix-helix | 0.54 | 49.0 | 4.51e-01 | 100.0% | 98.8% |