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CAKLQF020000016.1__CAH1088106.1__SAMEA5780031_02785__00009
Bact-VirCAKLQF020000016.1__CAH1088106.1__SAMEA5780031_02785__00009
Identity
- Kingdom:
- phage
Quality
96.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-125
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03331.20 best | LpxC | 133.4 | 1.50e-38 | 99.2% | 44.4% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3nzkA01 | 3.30.230.20 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › lpxc deacetylase, domain 1 | 0.99 | 97.0 | 9.57e-01 | 100.0% | 96.9% |
| 1nztA01 | 3.30.230.20 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › lpxc deacetylase, domain 1 | 0.86 | 78.0 | 7.91e-01 | 100.0% | 98.3% |
| 1pkpA02 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.74 | 44.0 | 5.47e-01 | 94.3% | 96.0% |
| 5xdsA02 | 3.30.230.40 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › Imidazole glycerol phosphate dehydratase; domain 1 | 0.54 | 41.0 | 4.39e-01 | 92.7% | 95.1% |
| 2kvoA01 | 2.40.30.220 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Photosystem II Psb28 | 0.53 | 32.0 | 3.47e-01 | 74.8% | 69.2% |
| 3if8B03 | 6.20.270.10 | Special › Other non-globular › Carboxypeptidase Inhibitor; Chain A › | 0.51 | 20.0 | 2.80e-01 | 74.0% | 71.7% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4130430 | 212.1.1.15 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › LpxC | 1.00 | 98.0 | 6.96e-01 | 100.0% | 41.3% |
| 2516372 | 212.1.1.15 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › LpxC | 1.00 | 98.0 | 6.95e-01 | 100.0% | 40.9% |
| 4375889 | 212.1.1.15 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › LpxC | 0.99 | 96.0 | 6.98e-01 | 100.0% | 43.3% |
| 4162433 | 212.1.1.15 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › LpxC | 0.98 | 96.0 | 6.93e-01 | 100.0% | 43.5% |
| 6033 | 212.1.1.15 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › LpxC | 0.97 | 91.0 | 9.23e-01 | 100.0% | 98.3% |
| 4338606 | 212.1.1.15 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › LpxC | 0.97 | 91.0 | 6.64e-01 | 100.0% | 42.9% |
| 4355882 | 212.1.1.15 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › LpxC | 0.96 | 92.0 | 6.75e-01 | 99.2% | 44.0% |
| 3805880 | 212.1.1.15 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › LpxC | 0.94 | 92.0 | 6.61e-01 | 100.0% | 44.7% |
| 3359890 | 212.1.1.15 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › LpxC | 0.94 | 92.0 | 6.56e-01 | 100.0% | 44.0% |
| 5071511 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.82 | 63.0 | 4.91e-01 | 78.9% | 47.4% |
| 5024267 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.78 | 66.0 | 6.72e-01 | 88.6% | 100.0% |
| 4948655 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.77 | 74.0 | 5.66e-01 | 100.0% | 50.8% |
| 4989029 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.75 | 71.0 | 5.55e-01 | 100.0% | 52.8% |
| 4065638 | 212.1.1.19 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › ACP | 0.68 | 48.0 | 5.23e-01 | 93.5% | 88.0% |
| 5057659 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.64 | 48.0 | 5.30e-01 | 93.5% | 96.0% |
| 3165458 | 212.1.1.32 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › ChlI | 0.62 | 46.0 | 4.82e-01 | 91.9% | 86.4% |
| 4984479 | 212.1.1.61 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Nre_C | 0.60 | 55.0 | 4.65e-01 | 100.0% | 77.5% |
| 4990958 | 212.1.1.60 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Nre_N | 0.59 | 50.0 | 4.41e-01 | 94.3% | 63.5% |
| 5045681 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.57 | 50.0 | 4.82e-01 | 95.9% | 84.3% |
| 4565474 | 212.1.1.3 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N | 0.56 | 47.0 | 4.32e-01 | 89.4% | 70.0% |
| 4928705 | 212.1.1.22 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Topo-VIb_trans | 0.56 | 47.0 | 4.03e-01 | 94.3% | 67.1% |
| 4943446 | 212.1.1.59 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › EFG_C | 0.55 | 49.0 | 4.91e-01 | 97.6% | 100.0% |
| None | — | 0.53 | 45.0 | 3.96e-01 | 92.7% | 81.1% | |
| 3987993 | 212.1.1.51 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › DUF1002 | 0.50 | 44.0 | 4.02e-01 | 95.1% | 86.9% |
D2
high
residues 127-189_229-291
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03331.20 best | LpxC | 38.2 | 1.70e-09 | 52.4% | 23.5% |
| PF03331.20 | LpxC | 68.7 | 8.20e-19 | 38.1% | 17.2% |
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3nzkA02 | 3.30.1700.10 | Alpha Beta › 2-Layer Sandwich › lpxc deacetylase, domain 1 › lpxc deacetylase, domain 2 | 0.99 | 97.0 | 8.48e-01 | 99.2% | 96.5% |
| 3p3cA02 | 3.30.1700.10 | Alpha Beta › 2-Layer Sandwich › lpxc deacetylase, domain 1 › lpxc deacetylase, domain 2 | 0.89 | 80.0 | 7.42e-01 | 92.9% | 98.7% |
| 2xzmE02 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.71 | 43.0 | 4.92e-01 | 90.5% | 81.1% |
| 1pkpA02 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.69 | 40.0 | 5.08e-01 | 88.9% | 97.3% |
| 2aj4B01 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.64 | 51.0 | 4.06e-01 | 84.1% | 60.1% |
| 1pieA01 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.61 | 47.0 | 4.01e-01 | 82.5% | 62.1% |
| 2a2cA01 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.58 | 46.0 | 3.82e-01 | 83.3% | 59.4% |
| 1rhyB02 | 3.30.230.40 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › Imidazole glycerol phosphate dehydratase; domain 1 | 0.58 | 41.0 | 4.67e-01 | 86.5% | 100.0% |
| 5xdsA02 | 3.30.230.40 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › Imidazole glycerol phosphate dehydratase; domain 1 | 0.55 | 42.0 | 4.62e-01 | 87.3% | 98.0% |
| 2ljpA00 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.55 | 45.0 | 4.70e-01 | 88.1% | 97.5% |
| 3ltoA01 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.53 | 43.0 | 3.86e-01 | 88.1% | 71.7% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4130430 | 212.1.1.15 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › LpxC | 0.99 | 96.0 | 6.92e-01 | 100.0% | 55.3% |
| 4116583 | 212.1.1.15 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › LpxC | 0.96 | 94.0 | 6.72e-01 | 100.0% | 54.4% |
| 3359890 | 212.1.1.15 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › LpxC | 0.95 | 82.0 | 5.93e-01 | 88.9% | 54.0% |
| 2516372 | 212.1.1.15 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › LpxC | 0.95 | 93.0 | 6.64e-01 | 100.0% | 53.5% |
| 4162433 | 212.1.1.15 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › LpxC | 0.93 | 83.0 | 6.06e-01 | 91.3% | 53.3% |
| 3805880 | 212.1.1.15 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › LpxC | 0.93 | 81.0 | 5.86e-01 | 89.7% | 52.5% |
| 4355882 | 212.1.1.15 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › LpxC | 0.92 | 83.0 | 6.16e-01 | 92.9% | 55.3% |
| 4338606 | 212.1.1.15 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › LpxC | 0.89 | 81.0 | 6.01e-01 | 93.7% | 54.9% |
| 4375889 | 212.1.1.15 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › LpxC | 0.89 | 81.0 | 5.97e-01 | 94.4% | 55.3% |
| 141903 | 212.1.1.15 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › LpxC | 0.89 | 81.0 | 7.46e-01 | 93.7% | 98.7% |
| 4948655 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.79 | 68.0 | 5.31e-01 | 90.5% | 48.4% |
| 4989029 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.79 | 66.0 | 5.22e-01 | 87.3% | 46.8% |
| 5071511 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.76 | 68.0 | 5.39e-01 | 94.4% | 52.1% |
| 5077050 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.71 | 47.0 | 5.57e-01 | 93.7% | 100.0% |
| 5022445 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.69 | 48.0 | 5.33e-01 | 94.4% | 90.0% |
| 4269272 | 212.1.1.23 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › RNase_E_G | 0.68 | 41.0 | 4.76e-01 | 87.3% | 84.4% |
| 5057659 | 212.1.1.0 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like | 0.67 | 49.0 | 5.45e-01 | 86.5% | 96.0% |
| 5056047 | 212.1.1.61 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Nre_C | 0.66 | 56.0 | 4.79e-01 | 91.3% | 62.5% |
| 4936098 | 212.1.1.60 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Nre_N | 0.65 | 56.0 | 4.45e-01 | 92.1% | 49.6% |
| None | — | 0.65 | 56.0 | 5.21e-01 | 91.3% | 79.9% | |
| 5029040 | 212.1.1.60 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Nre_N | 0.65 | 56.0 | 4.48e-01 | 92.1% | 52.1% |
| 5050840 | 212.1.1.60 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Nre_N | 0.65 | 56.0 | 4.40e-01 | 92.1% | 52.2% |
| 5021056 | 212.1.1.61 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Nre_C | 0.65 | 56.0 | 4.68e-01 | 92.1% | 58.6% |
| 4393766 | 212.1.1.19 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › ACP | 0.65 | 47.0 | 5.05e-01 | 91.3% | 89.5% |
| 5024305 | 212.1.1.60 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Nre_N | 0.59 | 51.0 | 4.17e-01 | 92.9% | 53.0% |
| 3677388 | 212.1.1.10 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › RNase_PH | 0.56 | 46.0 | 4.21e-01 | 87.3% | 80.0% |
| 4928307 | 212.1.1.6 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal_S9 | 0.56 | 41.0 | 4.30e-01 | 88.1% | 87.3% |
| 4205301 | 212.1.1.8 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribonuclease_P | 0.55 | 44.0 | 4.65e-01 | 91.3% | 96.4% |
| 3479510 | 3662.1.1.0 ↗ | a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related | 0.54 | 44.0 | 4.63e-01 | 88.9% | 100.0% |