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CAKLQF020000017.1__CAH1088282.1__SAMEA5780031_02877__00009

Bact-Vir

CAKLQF020000017.1__CAH1088282.1__SAMEA5780031_02877__00009

Identity

Kingdom:
phage

Quality

88.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-98
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.74 55.0 3.80e-01 77.5% 90.0%
2v7sA00 3.30.2030.20 Alpha Beta › 2-Layer Sandwich › TBP-like › 0.70 38.0 2.93e-01 78.8% 24.9%
3bxoA02 2.20.130.10 Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › CAC2371-like domains 0.68 43.0 4.93e-01 80.0% 88.1%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 43.0 4.35e-01 82.5% 65.4%
7dd9A02 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.66 45.0 3.03e-01 78.8% 21.4%
6fmeA03 2.20.220.10 Mainly Beta › Single Sheet › Glycosyl hydrolase fold › alpha-Amylases 0.66 41.0 4.66e-01 76.2% 82.3%
4tr6A01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.62 47.0 3.64e-01 81.2% 84.4%
4ojdH01 2.60.98.60 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Cell-cell fusogen EFF/AFF, domain 1 0.62 57.0 4.46e-01 100.0% 79.9%
2avtB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.61 46.0 3.60e-01 80.0% 84.3%
6mv2A01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 45.0 4.14e-01 77.5% 79.4%
5jozB02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 55.0 4.07e-01 100.0% 63.8%
5z5dA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.60 54.0 4.05e-01 100.0% 64.3%
3t0pA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.60 47.0 3.48e-01 82.5% 88.6%
5jowA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.59 53.0 3.97e-01 100.0% 64.0%
1s3rA03 3.40.30.40 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Perfringolysin 0.59 43.0 3.66e-01 76.2% 80.6%
2avtA02 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.59 46.0 3.40e-01 82.5% 88.4%
1k8kD01 3.30.1460.20 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.59 50.0 4.05e-01 92.5% 73.5%
5mc9A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 45.0 3.45e-01 100.0% 36.3%
2qziA00 3.40.1720.10 Alpha Beta › 3-Layer(aba) Sandwich › Streptococcus thermophilus LMG 18311 protein like › Streptococcus thermophilus LMG 18311 protein like 0.58 46.0 4.25e-01 83.7% 95.0%
4ba0A04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.58 45.0 3.68e-01 83.7% 84.6%
3t0pA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.56 43.0 3.35e-01 81.2% 84.3%
4fffA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.56 46.0 3.77e-01 100.0% 47.7%
2durB01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 49.0 3.60e-01 100.0% 69.4%
2j7qA00 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.56 45.0 3.25e-01 100.0% 30.7%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.55 48.0 3.85e-01 92.5% 80.8%
1cgtA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.55 40.0 3.82e-01 77.5% 94.7%
5w0kA01 3.90.380.20 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Herpesvirus glycoprotein H, domain D-II 0.55 46.0 3.03e-01 91.3% 63.4%
4akmB00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.55 45.0 3.63e-01 91.3% 91.7%
3edfA03 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.54 40.0 4.05e-01 77.5% 100.0%
1hn0A04 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.54 44.0 3.74e-01 85.0% 96.7%
4csdB00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.54 46.0 3.13e-01 92.5% 30.0%
2bs6A01 2.40.128.190 Mainly Beta › Beta Barrel › Lipocalin › 0.53 45.0 4.49e-01 92.5% 91.7%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.53 44.0 3.85e-01 100.0% 60.0%
1gv9A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 47.0 3.43e-01 100.0% 43.0%
3rc2A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.53 39.0 2.89e-01 77.5% 61.1%
1p32B00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.52 44.0 3.36e-01 90.0% 42.7%
3rbyA02 2.40.128.310 Mainly Beta › Beta Barrel › Lipocalin › Protein HRI1, C-terminal domain 0.52 43.0 4.13e-01 93.8% 86.3%
2xe4A02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.51 44.0 2.85e-01 93.8% 38.6%
3ge2A00 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.51 45.0 4.41e-01 97.5% 88.8%
1vr8A00 3.40.1000.20 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like 0.51 38.0 3.16e-01 77.5% 69.6%
2wjsA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 45.0 3.55e-01 100.0% 80.0%
4ktpB02 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.51 41.0 4.15e-01 87.5% 93.9%
5gv0A00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.51 42.0 3.42e-01 93.8% 89.5%
2wjsA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 44.0 3.44e-01 100.0% 88.0%
1okqA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 44.0 3.44e-01 98.8% 88.0%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5014685 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.78 42.0 4.69e-01 76.2% 66.2%
3168452 331.10.2.3 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › Med1 0.72 42.0 3.81e-01 78.8% 43.8%
3938315 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.66 50.0 3.69e-01 100.0% 31.2%
3233005 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.66 47.0 3.25e-01 97.5% 23.1%
3629564 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.65 60.0 4.84e-01 100.0% 86.2%
3405656 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.64 52.0 4.12e-01 100.0% 43.0%
3587134 12.6.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related 0.64 42.0 5.08e-01 80.0% 100.0%
3233173 10.1.1.83 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Menorin_C 0.62 57.0 4.11e-01 100.0% 69.8%
4001937 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.62 47.0 3.31e-01 92.5% 26.7%
3511087 5.1.4.36 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.62 43.0 2.84e-01 72.5% 42.5%
3521811 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.62 48.0 3.78e-01 100.0% 38.9%
3933902 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 53.0 3.21e-01 93.8% 25.5%
3799467 4026.1.1.0 a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.61 50.0 3.93e-01 91.3% 44.5%
3238618 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.60 46.0 2.96e-01 92.5% 17.4%
2320976 10.1.1.41 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › GH43_C2 0.60 54.0 4.04e-01 100.0% 64.0%
3464481 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.60 52.0 3.32e-01 93.8% 31.2%
3752441 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.60 38.0 3.27e-01 73.8% 42.5%
5070684 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.60 50.0 3.63e-01 88.7% 62.0%
3411613 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 42.0 2.76e-01 75.0% 42.6%
4569249 9.14.1.1 beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W › HRI1 0.59 38.0 3.66e-01 76.2% 57.8%
2044710 10.1.1.1 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_1 0.58 45.0 3.40e-01 100.0% 34.4%
3605755 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 53.0 3.39e-01 100.0% 88.9%
3610541 73.1.1.11 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › DUF3586 0.58 41.0 4.08e-01 100.0% 69.4%
4969785 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.58 50.0 3.61e-01 92.5% 57.2%
3593467 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 49.0 3.13e-01 91.3% 27.4%
3276895 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 49.0 3.07e-01 92.5% 19.8%
3190113 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 40.0 2.79e-01 73.8% 41.6%
3254772 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.57 46.0 3.30e-01 86.3% 56.3%
3407222 633.23.1.17 alpha bundles › Bromodomain-like › Claudin › Claudin › DuoxA 0.56 48.0 3.35e-01 91.3% 66.0%
3217145 5.1.4.149 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WDR54 0.56 48.0 3.23e-01 100.0% 89.9%
3246415 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.56 46.0 4.05e-01 100.0% 59.2%
3903552 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.56 45.0 2.94e-01 92.5% 19.7%
3739528 5.1.3.19 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.56 50.0 3.68e-01 98.8% 55.1%
4092711 633.23.1.12 alpha bundles › Bromodomain-like › Claudin › Claudin › Fig1 0.56 46.0 3.24e-01 88.7% 35.3%
3744121 5.1.4.36 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.56 42.0 2.77e-01 95.0% 17.4%
3699767 295.1.1.7 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › MRP 0.56 47.0 3.68e-01 91.3% 70.9%
3599544 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 46.0 3.05e-01 91.3% 34.0%
3523834 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.55 48.0 3.11e-01 95.0% 35.3%
3512735 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.55 47.0 3.33e-01 91.3% 59.6%
3717696 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 49.0 3.14e-01 98.8% 86.2%
3504035 633.33.1.1 alpha bundles › Bromodomain-like › Rogdi › Rogdi › Rogdi_lz 0.55 45.0 3.15e-01 90.0% 51.4%
3464744 5.1.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed 0.54 45.0 3.63e-01 91.3% 58.1%
5021185 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.53 47.0 3.70e-01 100.0% 86.3%
3277940 3844.2.1.1 a+b two layers › hydrogenase expression protein-like › MybT EspG5 chaperone › MybT EspG5 chaperone › ESX-1_EspG 0.53 44.0 3.14e-01 90.0% 68.3%
4301426 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.53 46.0 3.59e-01 100.0% 70.3%
3685044 633.23.1.12 alpha bundles › Bromodomain-like › Claudin › Claudin › Fig1 0.53 43.0 2.90e-01 85.0% 31.2%
3816749 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.52 47.0 3.14e-01 100.0% 79.4%
3747299 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.52 46.0 3.60e-01 100.0% 71.7%
3488356 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.52 46.0 3.31e-01 97.5% 70.0%
3819083 10.1.1.2 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Lectin_legB 0.52 45.0 3.26e-01 100.0% 70.0%
3266967 5.1.4.298 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_ELP1_1st, Beta-prop_ELP1_2nd 0.52 40.0 2.54e-01 85.0% 27.0%
3236848 5087.2.1.2 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 0.52 43.0 3.06e-01 96.2% 83.2%
3799730 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.52 46.0 3.45e-01 100.0% 74.0%
3167013 9.14.1.1 beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W › HRI1 0.52 43.0 4.16e-01 93.8% 87.2%
3613822 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 45.0 2.86e-01 100.0% 83.6%
134104 9.1.1.22 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › DUF3642 0.51 45.0 4.41e-01 97.5% 88.8%
3977969 9.11.1.0 beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like 0.51 43.0 3.93e-01 93.8% 81.8%
3959466 243.3.1.29 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF4333 0.51 33.0 3.44e-01 73.8% 70.7%
4991973 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 46.0 3.08e-01 98.8% 29.6%
3932908 633.23.1.5 alpha bundles › Bromodomain-like › Claudin › Claudin › Clc-like 0.50 41.0 2.95e-01 87.5% 65.0%
D2 high residues 103-126_149-256
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04254.20 best DUF432 48.1 1.40e-12 53.0% 59.3%
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wu2A04 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.64 34.0 4.27e-01 75.8% 87.0%
8bveA03 2.40.340.10 Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV 0.60 33.0 4.18e-01 75.0% 95.8%
5r0dB01 2.60.34.20 Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › 0.51 31.0 3.08e-01 93.2% 55.2%