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CAKLQF020000017.1__CAH1088408.1__SAMEA5780031_02941__00072
Bact-VirCAKLQF020000017.1__CAH1088408.1__SAMEA5780031_02941__00072
Identity
- Kingdom:
- phage
Quality
84.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-195
Domain cluster:
rep: putative_eIF-2gamma__YP_003970112__Cafeteria_roenbergensis_virus_BV-PW1__693272__D19-198
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02421.25 best | FeoB_N | 188.4 | 8.30e-56 | 84.4% | 98.7% |
| PF01926.30 | MMR_HSR1 | 69.0 | 5.20e-19 | 62.0% | 99.1% |
D2
medium
residues 243-293_402-449
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07664.18 best | FeoB_C | 42.1 | 7.80e-11 | 52.5% | 94.4% |
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3nb0B03 | 6.10.260.10 | Special › Helix non-globular › F1FO ATP Synthase › | 0.67 | 41.0 | 4.43e-01 | 83.8% | 72.6% |
| 2kseA00 | 1.20.5.1040 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Sensor protein qsec. | 0.65 | 36.0 | 4.09e-01 | 73.7% | 70.1% |
| 2fcwA00 | 1.20.81.10 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › RAP domain | 0.62 | 50.0 | 4.95e-01 | 99.0% | 80.2% |
| 5h5mA02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.62 | 46.0 | 4.20e-01 | 99.0% | 59.2% |
| 6pnjL00 | 1.20.1240.10 | Mainly Alpha › Up-down Bundle › Photosystem 1 Reaction Centre Subunit Xi; Chain: L; › Photosystem I PsaL, reaction centre subunit XI | 0.57 | 38.0 | 3.28e-01 | 79.8% | 43.6% |
| 4ke2A00 | 6.10.140.1860 | Special › Helix non-globular › Helix Hairpins › | 0.55 | 44.0 | 3.48e-01 | 84.8% | 57.7% |
| 4hteA01 | 1.20.58.1730 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 40.0 | 3.52e-01 | 88.9% | 51.7% |
| 3pltA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.54 | 49.0 | 3.81e-01 | 100.0% | 93.5% |
| 1lvlA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.53 | 43.0 | 3.34e-01 | 86.9% | 45.6% |
| 3aonA00 | 1.10.287.3240 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.52 | 41.0 | 3.29e-01 | 83.8% | 75.0% |
| 6vq6H01 | 1.10.287.3240 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 38.0 | 2.97e-01 | 77.8% | 91.7% |
| 4n21E00 | 1.10.287.210 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 40.0 | 3.79e-01 | 84.8% | 71.9% |
ECOD (20)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3645589 | 3748.1.1.3 ↗ | extended segments › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › eIF3h_C | 0.67 | 42.0 | 3.90e-01 | 83.8% | 51.2% |
| 5083908 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.65 | 36.0 | 3.39e-01 | 80.8% | 43.3% |
| 3952713 | 109.4.1.497 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › EccD | 0.63 | 36.0 | 2.53e-01 | 87.9% | 17.5% |
| 4988993 | 5086.1.1.231 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › Rad50_zn_hook | 0.62 | 41.0 | 3.56e-01 | 79.8% | 44.7% |
| 4985682 | 1075.1.2.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain › FtsX | 0.59 | 45.0 | 4.08e-01 | 83.8% | 60.0% |
| 3285319 | 4033.1.1.1 ↗ | alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA_dh_N | 0.58 | 33.0 | 2.95e-01 | 98.0% | 38.6% |
| 3988581 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.58 | 40.0 | 4.18e-01 | 83.8% | 77.8% |
| 3179250 | 4163.1.2.1 ↗ | alpha bundles › GINS helical bundle-like › GINS helical bundle-like › PSF2 C-terminal domain-like › Sld5 | 0.58 | 41.0 | 3.69e-01 | 92.9% | 52.9% |
| 3683560 | 150.5.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like | 0.56 | 39.0 | 3.23e-01 | 80.8% | 42.4% |
| 5035107 | 3922.1.1.358 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › PF26119 | 0.56 | 44.0 | 4.25e-01 | 99.0% | 72.8% |
| 3302491 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.56 | 37.0 | 3.43e-01 | 77.8% | 52.8% |
| 3491128 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.55 | 36.0 | 3.33e-01 | 81.8% | 50.8% |
| 3516641 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.54 | 42.0 | 3.49e-01 | 79.8% | 52.5% |
| 3529859 | 4177.1.1.10 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › GMIP-like_FCH | 0.54 | 49.0 | 3.49e-01 | 99.0% | 68.3% |
| 3667149 | 3722.1.1.1 ↗ | alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › MAP65_ASE1 | 0.53 | 41.0 | 2.76e-01 | 80.8% | 30.9% |
| 3475999 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 31.0 | 2.79e-01 | 87.9% | 39.3% |
| 3936675 | 106.1.1.0 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like | 0.53 | 37.0 | 3.18e-01 | 99.0% | 45.0% |
| 3397275 | 603.1.1.101 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › 7tm_6 | 0.52 | 47.0 | 3.13e-01 | 100.0% | 59.5% |
| 3785619 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.52 | 40.0 | 3.86e-01 | 82.8% | 71.3% |
| 3716970 | 603.2.1.0 ↗ | alpha bundles › STAT-like › STAT › STAT | 0.51 | 38.0 | 3.43e-01 | 85.9% | 57.0% |
D3
medium
residues 360-384_450-610
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF07670.20 best | Gate | 60.1 | 3.50e-16 | 72.6% | 99.0% |
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2lm9A00 | 1.20.58.970 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.69 | 25.0 | 3.38e-01 | 93.5% | 60.4% |
| 4kb2A01 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.58 | 28.0 | 3.65e-01 | 94.6% | 78.9% |
| 1fftC00 | 1.20.120.80 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle | 0.55 | 31.0 | 3.21e-01 | 83.3% | 55.1% |
| 5zzjA02 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.54 | 39.0 | 3.36e-01 | 73.7% | 54.9% |
| 4m70I00 | 1.20.5.4130 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.53 | 31.0 | 3.98e-01 | 95.7% | 98.1% |
| 6adqG01 | 1.20.120.80 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Cytochrome c oxidase, subunit III, four-helix bundle | 0.51 | 31.0 | 3.16e-01 | 83.9% | 58.4% |
| 4hzuS00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.50 | 35.0 | 3.68e-01 | 99.5% | 78.7% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4247515 | 3415.1.1.2 ↗ | alpha complex topology › Concentrative nucleoside transporter › Concentrative nucleoside transporter › Concentrative nucleoside transporter › FeoB_C,Gate | 0.92 | 88.0 | 6.48e-01 | 99.5% | 61.9% |
| 4219120 | 3415.1.1.2 ↗ | alpha complex topology › Concentrative nucleoside transporter › Concentrative nucleoside transporter › Concentrative nucleoside transporter › FeoB_C,Gate | 0.91 | 88.0 | 6.41e-01 | 100.0% | 64.7% |
| 3587895 | 3415.1.1.2 ↗ | alpha complex topology › Concentrative nucleoside transporter › Concentrative nucleoside transporter › Concentrative nucleoside transporter › FeoB_C,Gate | 0.85 | 82.0 | 6.02e-01 | 100.0% | 54.7% |
| 3604224 | 3415.1.1.2 ↗ | alpha complex topology › Concentrative nucleoside transporter › Concentrative nucleoside transporter › Concentrative nucleoside transporter › FeoB_C,Gate | 0.85 | 82.0 | 6.42e-01 | 100.0% | 68.7% |
| 4542790 | 3415.1.1.2 ↗ | alpha complex topology › Concentrative nucleoside transporter › Concentrative nucleoside transporter › Concentrative nucleoside transporter › FeoB_C,Gate | 0.84 | 80.0 | 6.37e-01 | 98.4% | 68.1% |
| 3388001 | 3415.1.1.2 ↗ | alpha complex topology › Concentrative nucleoside transporter › Concentrative nucleoside transporter › Concentrative nucleoside transporter › FeoB_C,Gate | 0.84 | 80.0 | 6.01e-01 | 99.5% | 59.8% |
| 4956783 | 3415.1.1.4 ↗ | alpha complex topology › Concentrative nucleoside transporter › Concentrative nucleoside transporter › Concentrative nucleoside transporter › Gate | 0.84 | 80.0 | 5.88e-01 | 97.8% | 55.4% |
| 4982184 | 3415.1.1.0 ↗ | alpha complex topology › Concentrative nucleoside transporter › Concentrative nucleoside transporter › Concentrative nucleoside transporter | 0.84 | 81.0 | 6.11e-01 | 100.0% | 60.5% |
| 4997344 | 3415.1.1.4 ↗ | alpha complex topology › Concentrative nucleoside transporter › Concentrative nucleoside transporter › Concentrative nucleoside transporter › Gate | 0.81 | 77.0 | 5.83e-01 | 99.5% | 59.0% |
| 4280108 | 3415.1.1.2 ↗ | alpha complex topology › Concentrative nucleoside transporter › Concentrative nucleoside transporter › Concentrative nucleoside transporter › FeoB_C,Gate | 0.80 | 76.0 | 5.65e-01 | 98.4% | 60.2% |
| 5016747 | 3415.1.1.4 ↗ | alpha complex topology › Concentrative nucleoside transporter › Concentrative nucleoside transporter › Concentrative nucleoside transporter › Gate | 0.79 | 74.0 | 5.79e-01 | 96.8% | 60.6% |
| 3983650 | 3415.1.1.2 ↗ | alpha complex topology › Concentrative nucleoside transporter › Concentrative nucleoside transporter › Concentrative nucleoside transporter › FeoB_C,Gate | 0.78 | 73.0 | 5.55e-01 | 97.8% | 57.7% |
| 5000592 | 3415.1.1.4 ↗ | alpha complex topology › Concentrative nucleoside transporter › Concentrative nucleoside transporter › Concentrative nucleoside transporter › Gate | 0.78 | 76.0 | 5.87e-01 | 100.0% | 59.4% |
| 4991246 | 3415.1.1.4 ↗ | alpha complex topology › Concentrative nucleoside transporter › Concentrative nucleoside transporter › Concentrative nucleoside transporter › Gate | 0.74 | 70.0 | 5.66e-01 | 98.4% | 60.6% |
| 5068025 | 3415.1.1.4 ↗ | alpha complex topology › Concentrative nucleoside transporter › Concentrative nucleoside transporter › Concentrative nucleoside transporter › Gate | 0.73 | 70.0 | 5.44e-01 | 98.9% | 58.1% |
| 5020815 | 3415.1.1.4 ↗ | alpha complex topology › Concentrative nucleoside transporter › Concentrative nucleoside transporter › Concentrative nucleoside transporter › Gate | 0.73 | 68.0 | 5.30e-01 | 97.3% | 56.4% |
| 4984130 | 3415.1.1.4 ↗ | alpha complex topology › Concentrative nucleoside transporter › Concentrative nucleoside transporter › Concentrative nucleoside transporter › Gate | 0.73 | 70.0 | 5.43e-01 | 100.0% | 58.6% |
| 5045254 | 3415.1.1.4 ↗ | alpha complex topology › Concentrative nucleoside transporter › Concentrative nucleoside transporter › Concentrative nucleoside transporter › Gate | 0.72 | 67.0 | 5.21e-01 | 95.7% | 56.9% |
| 5083709 | 3415.1.1.4 ↗ | alpha complex topology › Concentrative nucleoside transporter › Concentrative nucleoside transporter › Concentrative nucleoside transporter › Gate | 0.70 | 68.0 | 5.40e-01 | 100.0% | 56.0% |
| 5016874 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.57 | 33.0 | 3.53e-01 | 84.4% | 65.0% |
| 3655748 | 601.1.2.118 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › CASP_dom | 0.56 | 32.0 | 3.59e-01 | 86.6% | 69.6% |
| 4988448 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.55 | 32.0 | 3.37e-01 | 84.9% | 60.6% |
| 4119652 | 604.39.1.5 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › ECF_trnsprt | 0.54 | 37.0 | 3.76e-01 | 83.9% | 68.3% |
| 3250022 | 5045.1.1.1 ↗ | alpha bundles › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › ATP-synt_A | 0.53 | 44.0 | 4.00e-01 | 86.6% | 98.4% |
| 4410029 | 5045.1.1.1 ↗ | alpha bundles › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › ATP-synt_A | 0.52 | 40.0 | 3.97e-01 | 81.7% | 93.5% |
| 3453029 | 611.7.1.16 ↗ | alpha bundles › N-cbl like › Mixed lineage kinase domain-like (MLKL) N-terminal domain › Mixed lineage kinase domain-like (MLKL) N-terminal domain › PUB2_N | 0.51 | 31.0 | 3.01e-01 | 97.8% | 52.4% |