Back to structures

CAKLQF020000018.1__CAH1088738.1__SAMEA5780031_02998__00040

Bact-Vir

CAKLQF020000018.1__CAH1088738.1__SAMEA5780031_02998__00040

Identity

Kingdom:
phage

Quality

89.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 81-237
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01032.24 best FecCD 70.2 2.20e-19 99.4% 50.3%
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1l7vA00 1.10.3470.10 Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC 0.89 85.0 6.52e-01 100.0% 48.9%
2nq2A00 1.10.3470.10 Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC 0.76 71.0 5.57e-01 100.0% 50.3%
7lb8B01 1.10.3470.10 Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC 0.76 71.0 5.55e-01 100.0% 49.5%
5b57B00 1.10.3470.10 Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC 0.74 69.0 5.34e-01 100.0% 49.7%
2js9A00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.55 30.0 3.94e-01 91.7% 100.0%
3r6nB01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 29.0 2.57e-01 88.5% 34.8%
6wbvA01 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.54 48.0 3.56e-01 100.0% 84.1%
5azpB01 1.20.1600.10 Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.53 43.0 3.29e-01 87.3% 63.1%
3gi8C00 1.20.1740.10 Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I 0.53 43.0 3.21e-01 89.8% 67.8%
1lj8A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.51 30.0 2.78e-01 77.7% 44.0%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4420734 5065.1.1.2 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.99 97.0 7.41e-01 100.0% 50.8%
4471275 5065.1.1.2 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.98 96.0 7.41e-01 100.0% 52.5%
4034551 5065.1.1.2 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.98 96.0 7.27e-01 100.0% 49.8%
3963888 5065.1.1.2 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.97 95.0 7.37e-01 100.0% 53.2%
3988277 5065.1.1.2 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.96 93.0 7.25e-01 100.0% 53.2%
3983080 5065.1.1.1 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 0.88 80.0 6.36e-01 100.0% 52.3%
4045493 5065.1.1.1 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 0.87 79.0 6.34e-01 100.0% 53.2%
4329001 5065.1.1.2 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.87 82.0 6.25e-01 100.0% 47.2%
3988747 5065.1.1.2 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.85 81.0 6.17e-01 100.0% 48.5%
3587045 5065.1.1.2 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.85 80.0 6.35e-01 100.0% 53.0%
3946003 5065.1.1.1 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 0.84 79.0 6.33e-01 100.0% 55.0%
3966782 5065.1.1.1 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 0.84 78.0 6.21e-01 100.0% 52.5%
4456395 5065.1.1.1 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 0.83 78.0 6.22e-01 100.0% 54.8%
4385177 5065.1.1.2 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.82 77.0 5.95e-01 100.0% 48.0%
4150602 5065.1.1.1 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 0.81 77.0 6.00e-01 100.0% 51.0%
4031347 5065.1.1.1 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 0.81 77.0 6.24e-01 100.0% 57.1%
4298559 5065.1.1.1 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 0.81 76.0 5.96e-01 100.0% 51.0%
3285452 5065.1.1.1 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 0.81 73.0 5.94e-01 100.0% 54.5%
4991554 5065.1.1.1 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 0.80 75.0 6.07e-01 100.0% 56.5%
4933518 5065.1.1.1 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 0.79 74.0 6.11e-01 100.0% 58.5%
2817087 5065.1.1.1 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 0.79 71.0 5.66e-01 100.0% 51.0%
4403730 5065.1.1.2 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.79 73.0 5.48e-01 100.0% 43.7%
4034080 5065.1.1.2 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.77 72.0 5.59e-01 100.0% 49.2%
4030838 5065.1.1.2 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.77 72.0 5.68e-01 100.0% 53.2%
4032727 5065.1.1.2 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.77 72.0 5.56e-01 100.0% 51.2%
4958599 5065.1.1.1 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › ABC-3 0.76 70.0 5.69e-01 100.0% 55.3%
4945574 5065.1.1.2 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.76 72.0 5.67e-01 100.0% 53.0%
4004423 5065.1.1.2 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.76 70.0 5.50e-01 100.0% 49.5%
4247949 5065.1.1.2 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.76 71.0 5.50e-01 100.0% 49.2%
3279571 5065.1.1.2 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.76 70.0 5.40e-01 100.0% 47.1%
4958610 5065.1.1.2 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.76 71.0 5.33e-01 100.0% 47.6%
5041619 5065.1.1.2 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.76 68.0 5.34e-01 100.0% 48.4%
3602359 5065.1.1.2 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.75 70.0 5.39e-01 100.0% 48.2%
3989107 5065.1.1.2 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.75 71.0 5.43e-01 100.0% 49.4%
4034566 5065.1.1.2 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.75 70.0 5.55e-01 100.0% 51.8%
3948125 5065.1.1.2 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.75 70.0 5.45e-01 100.0% 49.7%
4033757 5065.1.1.2 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.75 70.0 5.55e-01 100.0% 53.2%
5006620 5065.1.1.2 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.74 69.0 5.49e-01 100.0% 52.1%
3983399 5065.1.1.2 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.74 69.0 5.33e-01 100.0% 49.2%
3387572 5065.1.1.2 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.72 67.0 5.23e-01 100.0% 49.7%
3947472 5065.1.1.3 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 0.71 66.0 5.12e-01 100.0% 49.8%
4302432 5065.1.1.3 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 0.69 64.0 5.01e-01 100.0% 51.7%
4007927 5065.1.1.3 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 0.69 64.0 5.01e-01 100.0% 52.1%
3621548 5079.1.1.1 alpha duplicates or obligate multimers › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › MgtE 0.57 47.0 4.24e-01 88.5% 70.7%
3408298 106.1.1.0 alpha arrays › Globin-like › Globin-like › Globin-like 0.55 36.0 3.59e-01 76.4% 63.7%
3253074 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.52 36.0 4.07e-01 79.6% 93.3%
3262785 5001.1.1.79 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › YhhN 0.51 43.0 3.59e-01 91.7% 97.8%
D2 medium residues 258-313
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01032.24 best FecCD 40.2 3.00e-10 94.6% 16.4%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7lb8B02 1.10.3470.10 Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC 0.90 78.0 4.76e-01 94.6% 17.1%
1omsA00 3.30.70.1050 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain 0.72 53.0 4.18e-01 78.6% 41.2%
3t8vA05 1.25.50.10 Mainly Alpha › Alpha Horseshoe › Zincin-like fold › Peptidase M1, alanyl aminopeptidase, C-terminal domain 0.68 56.0 3.55e-01 98.2% 31.6%
2ql2B00 4.10.280.10 Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain 0.67 48.0 4.73e-01 75.0% 72.9%
3ehfD01 1.20.5.1930 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.65 46.0 4.48e-01 75.0% 71.4%
2zttA00 6.10.140.720 Special › Helix non-globular › Helix Hairpins › 0.65 42.0 3.84e-01 80.4% 50.7%
4nooB00 1.10.8.1160 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.64 52.0 4.40e-01 92.9% 53.7%
2i7uA00 6.10.250.1010 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.64 45.0 4.45e-01 76.8% 75.8%
7dg2C01 1.10.10.1200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH1 motif 0.63 43.0 3.91e-01 92.9% 52.0%
2e9xD01 1.20.58.1030 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.60 48.0 3.58e-01 87.5% 81.8%
3nbiA01 1.10.8.1020 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain 0.58 38.0 3.86e-01 71.4% 67.2%
2mpnA00 6.10.140.1340 Special › Helix non-globular › Helix Hairpins › 0.57 44.0 4.15e-01 83.9% 72.1%
1cqxA01 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.57 44.0 3.27e-01 85.7% 36.7%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4420734 5065.1.1.2 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.99 95.0 5.70e-01 100.0% 18.1%
4034551 5065.1.1.2 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.99 94.0 5.62e-01 100.0% 17.8%
3963888 5065.1.1.2 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.97 91.0 5.51e-01 98.2% 18.6%
3988277 5065.1.1.2 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.94 88.0 5.35e-01 100.0% 19.0%
4471275 5065.1.1.2 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.94 87.0 5.28e-01 100.0% 18.7%
3387572 5065.1.1.2 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.93 86.0 5.17e-01 100.0% 17.6%
3279571 5065.1.1.2 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.93 79.0 4.69e-01 91.1% 15.0%
4385177 5065.1.1.2 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.89 81.0 4.90e-01 100.0% 17.0%
4033757 5065.1.1.2 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › FecCD 0.84 75.0 4.65e-01 100.0% 18.7%
2388480 109.4.1.241 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF3458_C 0.68 56.0 3.55e-01 98.2% 31.8%
3475426 103.12.1.0 alpha arrays › RuvA-C › ANTAR domain › ANTAR domain 0.63 49.0 4.59e-01 85.7% 68.6%
3314414 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.61 45.0 3.89e-01 80.4% 57.8%
3575885 108.1.1.28 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_6,EF-hand_7 0.60 44.0 3.74e-01 80.4% 53.7%
3810390 108.1.1.29 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_7 0.57 45.0 3.86e-01 87.5% 59.6%
3251448 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.56 46.0 2.78e-01 98.2% 38.0%
5074316 207.7.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Alpha subunit of glutamate synthase-C › Alpha subunit of glutamate synthase-C › GXGXG 0.56 47.0 3.17e-01 98.2% 57.0%
3260646 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.55 43.0 3.89e-01 83.9% 62.7%