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CAKLQF020000019.1__CAH1089614.1__SAMEA5780031_03033__00002
Bact-VirCAKLQF020000019.1__CAH1089614.1__SAMEA5780031_03033__00002
Identity
- Kingdom:
- phage
Quality
95.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-196
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.74 | 27.0 | 4.67e-01 | 86.2% | 100.0% |
| 3l5iA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.68 | 31.0 | 4.47e-01 | 89.8% | 93.2% |
| 1owwA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.67 | 30.0 | 4.25e-01 | 92.9% | 87.1% |
| 3r8qA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.67 | 30.0 | 4.17e-01 | 92.3% | 85.9% |
| 7y8sB01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.67 | 30.0 | 4.31e-01 | 91.8% | 93.1% |
| 2ibgA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.66 | 31.0 | 4.21e-01 | 92.3% | 84.3% |
| 5fmvA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.64 | 28.0 | 4.10e-01 | 91.8% | 92.9% |
| 2je8A04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 32.0 | 4.25e-01 | 92.3% | 93.1% |
| 1cd9B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 30.0 | 4.04e-01 | 90.3% | 90.8% |
| 1cfbA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 30.0 | 3.99e-01 | 91.8% | 86.8% |
| 1qysA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.59 | 28.0 | 4.02e-01 | 86.2% | 96.7% |
| 1zq7A01 | 3.30.700.20 | Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Hypothetical protein ph0010; domain 1 | 0.58 | 34.0 | 4.08e-01 | 96.4% | 86.6% |
| 2q3xA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.58 | 35.0 | 4.07e-01 | 99.0% | 82.4% |
| 1hw7A01 | 3.55.30.10 | Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain | 0.58 | 34.0 | 3.60e-01 | 99.5% | 64.2% |
| 1djxA03 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.57 | 34.0 | 4.04e-01 | 98.5% | 86.3% |
| 4eq3A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 30.0 | 3.86e-01 | 91.8% | 88.9% |
| 5fdyA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 31.0 | 3.82e-01 | 92.9% | 86.2% |
| 1nc7A00 | 2.60.290.11 | Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › TM1070-like | 0.55 | 30.0 | 3.70e-01 | 97.4% | 86.2% |
| 4nx9A02 | 2.60.40.4390 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 31.0 | 3.85e-01 | 93.4% | 90.1% |
| 2jvuA00 | 2.60.40.2290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 25.0 | 3.31e-01 | 85.2% | 82.7% |
| 1j5yA02 | 3.30.1340.20 | Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › 3H domain | 0.53 | 28.0 | 3.61e-01 | 97.4% | 89.7% |
| 2qlcA00 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.51 | 27.0 | 3.23e-01 | 86.2% | 76.2% |
| 2ecuA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.50 | 31.0 | 3.54e-01 | 84.7% | 79.9% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3411239 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.67 | 31.0 | 4.34e-01 | 91.8% | 88.4% |
| 3923903 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.67 | 30.0 | 4.04e-01 | 92.3% | 78.1% |
| 4942285 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.63 | 26.0 | 4.05e-01 | 81.1% | 98.7% |
| 4026479 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.56 | 32.0 | 3.83e-01 | 76.0% | 83.1% |
| 3289921 | 11.1.1.424 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF2771 | 0.56 | 35.0 | 4.22e-01 | 91.8% | 91.9% |
| 1269 | 10.7.1.1 ↗ | beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 › ASRT | 0.55 | 30.0 | 3.70e-01 | 97.4% | 86.2% |
| 3290861 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.54 | 29.0 | 3.54e-01 | 92.9% | 78.5% |
| 184690 | 11.22.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Dispersin › Dispersin › CellEnv_BiogenAssoc | 0.53 | 25.0 | 3.31e-01 | 85.2% | 82.7% |
| 3840130 | 272.1.1.3 ↗ | a+b two layers › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TolA/TonB C-terminal domain › TonB_2 | 0.52 | 21.0 | 3.01e-01 | 91.8% | 81.2% |
D2
medium
residues 200-243_402-551
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4epzA00 | 1.25.40.810 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › UpxZ | 0.74 | 42.0 | 4.73e-01 | 75.8% | 70.8% |
| 3qkyA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.66 | 38.0 | 3.44e-01 | 71.1% | 42.2% |
| 4y6cA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.64 | 37.0 | 3.66e-01 | 76.3% | 51.9% |
| 7zcvA02 | 1.25.40.400 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.64 | 38.0 | 3.71e-01 | 77.3% | 52.9% |
| 4gyoB01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.63 | 35.0 | 4.11e-01 | 74.2% | 74.8% |
| 3gt5A00 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.63 | 57.0 | 4.51e-01 | 97.9% | 99.7% |
| 4rl5A00 | 1.20.1280.170 | Mainly Alpha › Up-down Bundle › Monooxygenase › Exocyst complex component Exo70 | 0.59 | 43.0 | 3.27e-01 | 74.2% | 38.8% |
| 2i0mA02 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.58 | 31.0 | 4.22e-01 | 84.0% | 100.0% |
| 4rg6A03 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.58 | 31.0 | 3.66e-01 | 77.3% | 72.9% |
| 4b89A00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.57 | 38.0 | 3.61e-01 | 77.3% | 57.0% |
| 3kavA00 | 1.20.1270.360 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.55 | 27.0 | 3.53e-01 | 71.6% | 84.3% |
| 1orjD00 | 1.20.120.340 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS | 0.53 | 29.0 | 3.50e-01 | 82.5% | 79.2% |
| 3iqcA00 | 1.20.120.340 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS | 0.52 | 26.0 | 3.23e-01 | 92.3% | 74.8% |
| 2pbeA02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.50 | 29.0 | 3.54e-01 | 71.6% | 86.5% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5060788 | 109.2.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid | 0.87 | 82.0 | 6.20e-01 | 97.4% | 94.2% |
| 3620341 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.66 | 35.0 | 4.54e-01 | 74.7% | 91.4% |
| 3743213 | 109.2.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Glyco_hydro_15 | 0.65 | 60.0 | 4.63e-01 | 96.4% | 99.0% |
| 4982242 | 109.2.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid | 0.65 | 46.0 | 3.32e-01 | 81.4% | 26.7% |
| 3549165 | 109.4.1.919 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_SCC3-SA | 0.65 | 49.0 | 3.99e-01 | 77.3% | 49.6% |
| 3397991 | 109.4.1.25 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DIL | 0.64 | 47.0 | 3.78e-01 | 75.8% | 85.1% |
| 3926631 | 109.4.1.25 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DIL | 0.63 | 46.0 | 3.70e-01 | 74.7% | 86.7% |
| 3744725 | 109.4.1.25 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DIL | 0.61 | 45.0 | 3.55e-01 | 77.3% | 86.7% |
| 3919515 | 109.4.1.1492 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HEAT_SCC3-SA, PF31007 | 0.60 | 45.0 | 3.44e-01 | 77.3% | 38.7% |
| 5070202 | 109.4.1.210 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_19 | 0.58 | 37.0 | 3.97e-01 | 82.5% | 72.9% |
| 3188308 | 109.3.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat | 0.57 | 47.0 | 4.18e-01 | 90.2% | 60.7% |
| 3943720 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.57 | 33.0 | 3.82e-01 | 74.2% | 77.9% |
| 3662474 | 109.4.1.541 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF4220 | 0.56 | 40.0 | 3.45e-01 | 72.7% | 80.3% |
| 4333411 | 601.18.1.4 ↗ | alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 › CYP38_PsbQ-like | 0.56 | 28.0 | 3.35e-01 | 75.8% | 69.2% |
| 3614600 | 109.2.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid | 0.55 | 49.0 | 3.94e-01 | 95.9% | 66.9% |
| 3488831 | 109.4.1.70 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID | 0.55 | 38.0 | 4.29e-01 | 77.3% | 93.1% |
| 4013843 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 37.0 | 2.55e-01 | 77.3% | 20.6% |
| 3691273 | 109.3.1.242 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Fungal_trans_2 | 0.55 | 36.0 | 4.03e-01 | 75.8% | 83.9% |
| 3232394 | 109.4.1.264 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RMD1-3 | 0.54 | 42.0 | 3.47e-01 | 79.9% | 65.2% |
| 3782798 | 109.4.1.681 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2 | 0.54 | 45.0 | 3.43e-01 | 88.7% | 82.0% |
| 4502437 | 601.3.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › Hpt | 0.54 | 31.0 | 3.83e-01 | 72.7% | 90.0% |
| 3709676 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.53 | 39.0 | 3.52e-01 | 75.8% | 80.0% |
| 3693457 | 109.3.1.242 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Fungal_trans_2 | 0.52 | 35.0 | 3.73e-01 | 75.3% | 78.8% |
| 3690755 | 109.5.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › adenylylcyclase associated protein, CAP-N › adenylylcyclase associated protein, CAP-N › CAP_N | 0.50 | 36.0 | 3.68e-01 | 82.5% | 74.2% |
D3
medium
residues 244-299_330-357_380-401
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1nxcA00 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.82 | 75.0 | 4.83e-01 | 100.0% | 37.3% |
| 3k7xA00 | 1.50.10.20 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.80 | 75.0 | 5.09e-01 | 100.0% | 45.5% |
| 1nc5A00 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.78 | 72.0 | 4.87e-01 | 100.0% | 46.8% |
| 3qxfA00 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.73 | 66.0 | 4.64e-01 | 100.0% | 47.8% |
| 4hteA03 | 1.10.167.30 | Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › | 0.69 | 38.0 | 4.31e-01 | 74.5% | 71.2% |
| 4wu0A00 | 1.50.10.10 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › | 0.69 | 63.0 | 4.28e-01 | 100.0% | 39.7% |
| 2clbA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.68 | 32.0 | 2.80e-01 | 79.2% | 28.9% |
| 2qf9A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.59 | 31.0 | 2.79e-01 | 79.2% | 32.1% |
| 1ed1A00 | 1.10.150.90 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Immunodeficiency lentiviruses, gag gene matrix protein p17 | 0.55 | 32.0 | 3.17e-01 | 84.0% | 53.5% |
| 4dwlA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.55 | 35.0 | 3.56e-01 | 82.1% | 63.9% |
| 2zdiB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.53 | 34.0 | 3.43e-01 | 79.2% | 64.2% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5060788 | 109.2.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid | 0.89 | 85.0 | 5.51e-01 | 100.0% | 39.5% |
| 3630583 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.58 | 33.0 | 3.31e-01 | 79.2% | 53.6% |
| 4259368 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.56 | 33.0 | 3.19e-01 | 79.2% | 51.7% |
| 3585138 | 4275.1.1.9 ↗ | alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › PF26809 | 0.55 | 29.0 | 2.44e-01 | 79.2% | 29.7% |
| 3270487 | 192.2.1.1 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 | 0.51 | 32.0 | 3.19e-01 | 79.2% | 60.0% |
D4
medium
residues 300-329_358-379
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5w0kA01 | 3.90.380.20 | Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Herpesvirus glycoprotein H, domain D-II | 0.70 | 59.0 | 3.65e-01 | 100.0% | 75.7% |
| 1vomA01 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.68 | 46.0 | 2.81e-01 | 71.2% | 54.4% |
| 3purA03 | 1.20.58.1360 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.66 | 54.0 | 4.45e-01 | 100.0% | 74.5% |
| 3ctwB00 | 1.10.8.930 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Protein of unknown function DUF1465 | 0.65 | 54.0 | 4.27e-01 | 100.0% | 55.0% |
| 1sumB01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.63 | 52.0 | 4.29e-01 | 100.0% | 85.0% |
| 2jqqA00 | 1.20.58.1240 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.63 | 51.0 | 3.83e-01 | 100.0% | 55.2% |
| 4it4A02 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.62 | 53.0 | 4.48e-01 | 98.1% | 75.8% |
| 2c35A00 | 1.20.1250.40 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › RNA Polymerase II, Rpb4 subunit | 0.62 | 46.0 | 3.52e-01 | 80.8% | 87.5% |
| 4ikhA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.59 | 47.0 | 3.77e-01 | 100.0% | 68.5% |
| 4hr1A00 | 1.20.1270.410 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.59 | 49.0 | 3.82e-01 | 96.2% | 76.3% |
| 3uarA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.59 | 49.0 | 3.97e-01 | 98.1% | 70.1% |
| 1lvfB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 46.0 | 3.92e-01 | 100.0% | 92.3% |
| 1m6nA04 | 1.10.3060.10 | Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.57 | 42.0 | 3.18e-01 | 80.8% | 58.5% |
| 4l8iB00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.57 | 48.0 | 3.80e-01 | 96.2% | 84.8% |
| 2nsaA00 | 1.10.3120.10 | Mainly Alpha › Orthogonal Bundle › Trigger factor, domain 2 › Trigger factor, C-terminal domain | 0.56 | 40.0 | 2.76e-01 | 98.1% | 23.4% |
| 1a3qA01 | 2.60.40.340 | Mainly Beta › Sandwich › Immunoglobulin-like › Rel homology domain (RHD), DNA-binding domain | 0.56 | 38.0 | 2.56e-01 | 71.2% | 25.1% |
| 1vf7A03 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.55 | 43.0 | 4.07e-01 | 82.7% | 85.0% |
| 4arvA02 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.55 | 44.0 | 3.29e-01 | 86.5% | 61.9% |
| 1yozA00 | 1.10.3200.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein af0941 › AF0941-like | 0.55 | 49.0 | 3.85e-01 | 100.0% | 75.2% |
| 1vi0A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 44.0 | 3.27e-01 | 94.2% | 51.0% |
| 2q12A00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.53 | 44.0 | 2.87e-01 | 94.2% | 69.0% |
| 2wyhB02 | 1.10.1240.90 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.53 | 45.0 | 3.65e-01 | 100.0% | 51.9% |
| 1kblA05 | 1.20.80.30 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.52 | 44.0 | 3.81e-01 | 100.0% | 84.3% |
| 1omsA00 | 3.30.70.1050 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain | 0.52 | 41.0 | 3.18e-01 | 86.5% | 86.0% |
| 1m62A00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.51 | 42.0 | 3.68e-01 | 100.0% | 87.4% |
| 3lyuA01 | 3.40.50.80 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module | 0.51 | 37.0 | 3.04e-01 | 94.2% | 38.4% |
| 3mq1A01 | 1.20.58.970 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 43.0 | 3.62e-01 | 96.2% | 91.3% |
| 1ykhA00 | 6.10.140.200 | Special › Helix non-globular › Helix Hairpins › | 0.51 | 41.0 | 3.26e-01 | 84.6% | 49.5% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4272227 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.68 | 47.0 | 2.93e-01 | 73.1% | 64.0% |
| 3712717 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.67 | 56.0 | 4.07e-01 | 96.2% | 53.5% |
| 3704019 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.65 | 53.0 | 4.35e-01 | 98.1% | 80.0% |
| 3588615 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.62 | 52.0 | 4.43e-01 | 100.0% | 87.8% |
| 4000262 | 192.5.1.1 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1 | 0.61 | 43.0 | 3.70e-01 | 76.9% | 85.6% |
| 3790121 | 603.1.1.114 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › HR1 | 0.61 | 50.0 | 4.17e-01 | 96.2% | 87.0% |
| 3731535 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.60 | 42.0 | 3.38e-01 | 73.1% | 62.0% |
| 4014485 | 5044.1.1.0 ↗ | extended segments › PsbZ-like › PsbZ-like › PsbZ-like | 0.60 | 42.0 | 3.42e-01 | 73.1% | 65.3% |
| 3976215 | 105.2.1.0 ↗ | alpha duplicates or obligate multimers › HLH-like › Dimerization domain in LRIM1/APL1C › Dimerization domain in LRIM1/APL1C | 0.59 | 46.0 | 3.20e-01 | 82.7% | 73.5% |
| 3595904 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 47.0 | 3.66e-01 | 98.1% | 60.7% |
| 4549103 | 3755.4.1.54 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › PF30340 | 0.58 | 46.0 | 2.70e-01 | 84.6% | 38.4% |
| 3179819 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.57 | 44.0 | 3.37e-01 | 92.3% | 77.0% |
| 3600606 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.57 | 47.0 | 3.40e-01 | 100.0% | 68.6% |
| 5069548 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.56 | 42.0 | 3.95e-01 | 80.8% | 73.8% |
| 3438819 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.56 | 45.0 | 4.25e-01 | 84.6% | 88.3% |
| 3412240 | 174.1.1.33 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Erg28 | 0.56 | 46.0 | 3.59e-01 | 100.0% | 56.9% |
| 4196235 | 159.1.1.1 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 › MazG | 0.56 | 41.0 | 3.24e-01 | 76.9% | 54.0% |
| 4423640 | 5059.1.1.5 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › UAA | 0.56 | 44.0 | 2.82e-01 | 100.0% | 88.7% |
| 3237711 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 46.0 | 3.02e-01 | 100.0% | 24.6% |
| 3960460 | 620.1.1.0 ↗ | alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases | 0.55 | 44.0 | 3.33e-01 | 94.2% | 85.7% |
| 3676089 | 109.4.1.460 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › UTP20_C | 0.55 | 49.0 | 2.98e-01 | 100.0% | 37.9% |
| 3863010 | 4177.1.1.0 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like | 0.55 | 44.0 | 2.67e-01 | 96.2% | 43.7% |
| 3693701 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.55 | 48.0 | 2.80e-01 | 100.0% | 24.1% |
| 3891429 | 2003.1.5.134 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DUF4470+DUF4471 | 0.54 | 42.0 | 2.63e-01 | 86.5% | 26.7% |
| 4805048 | 5057.1.1.0 ↗ | alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore | 0.54 | 43.0 | 3.61e-01 | 96.2% | 67.6% |
| 158004 | 193.1.1.1 ↗ | alpha bundles › CH domain-like › Calponin-homology domain-like › Calponin-homology domain-like › CH | 0.53 | 43.0 | 3.12e-01 | 100.0% | 31.4% |
| 3584009 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.52 | 40.0 | 2.56e-01 | 82.7% | 33.1% |
| 3280959 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.52 | 39.0 | 2.94e-01 | 86.5% | 96.6% |
| 3696853 | 3092.1.1.1 ↗ | alpha arrays › yeast protein YOR252W › yeast protein YOR252W › yeast protein YOR252W › Tma16 | 0.51 | 36.0 | 2.63e-01 | 75.0% | 60.0% |
| 3703911 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 45.0 | 2.97e-01 | 100.0% | 37.3% |
| 3182060 | 4168.1.1.0 ↗ | alpha duplicates or obligate multimers › HAMP domain › HAMP domain › HAMP domain | 0.51 | 42.0 | 3.81e-01 | 96.2% | 64.0% |