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CAKLQF020000019.1__CAH1089623.1__SAMEA5780031_03036__00005
Bact-VirCAKLQF020000019.1__CAH1089623.1__SAMEA5780031_03036__00005
Identity
- Kingdom:
- phage
Quality
94.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-55
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01035.27 best | DNA_binding_1 | 46.3 | 4.40e-12 | 83.6% | 53.1% |
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2kifA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.90 | 74.0 | 5.85e-01 | 90.9% | 47.1% |
| 3mvpA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.78 | 59.0 | 6.32e-01 | 83.6% | 100.0% |
| 2fd5A01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.76 | 59.0 | 6.21e-01 | 83.6% | 97.9% |
| 1zarA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 58.0 | 4.97e-01 | 87.3% | 75.3% |
| 3sdgA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.72 | 49.0 | 5.45e-01 | 70.9% | 100.0% |
| 1d8jA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 63.0 | 5.59e-01 | 100.0% | 76.5% |
| 1u8bA02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.72 | 57.0 | 5.53e-01 | 96.4% | 80.3% |
| 3mq0A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 60.0 | 5.50e-01 | 100.0% | 88.3% |
| 4mloA03 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.69 | 55.0 | 5.35e-01 | 92.7% | 82.0% |
| 4mk6A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.69 | 57.0 | 3.99e-01 | 94.5% | 57.4% |
| 1wgxA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.67 | 59.0 | 5.39e-01 | 100.0% | 80.8% |
| 2l01A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 57.0 | 5.20e-01 | 100.0% | 70.1% |
| 2cqqA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.67 | 54.0 | 5.09e-01 | 92.7% | 74.6% |
| 7bqjA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 52.0 | 4.64e-01 | 85.5% | 58.0% |
| 4a6dA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.67 | 54.0 | 4.65e-01 | 94.5% | 75.5% |
| 3w6vA00 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.65 | 55.0 | 4.51e-01 | 100.0% | 50.5% |
| 3ol4A02 | 1.10.10.2390 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.65 | 49.0 | 4.86e-01 | 87.3% | 90.0% |
| 3f8mA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 51.0 | 4.90e-01 | 89.1% | 78.5% |
| 3s2wG00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 50.0 | 3.86e-01 | 96.4% | 45.1% |
| 1rz4A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 46.0 | 4.06e-01 | 90.9% | 53.3% |
| 3pxpA02 | 3.30.450.180 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.60 | 51.0 | 3.52e-01 | 96.4% | 26.6% |
| 2pg0A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.60 | 52.0 | 3.73e-01 | 94.5% | 51.0% |
| 3di2A00 | 1.20.1250.50 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.59 | 43.0 | 3.44e-01 | 92.7% | 38.3% |
| 3qldA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.58 | 48.0 | 3.63e-01 | 98.2% | 55.9% |
| 3f4mA00 | 1.20.1440.160 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like | 0.57 | 50.0 | 3.60e-01 | 96.4% | 64.3% |
| 1rktA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.56 | 42.0 | 4.26e-01 | 89.1% | 94.3% |
| 1z05A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 41.0 | 3.91e-01 | 90.9% | 68.1% |
| 2cwoA01 | 1.20.58.1200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RNA silencing suppressor P21, N-terminal domain | 0.54 | 45.0 | 4.15e-01 | 94.5% | 90.5% |
| 3b8mC02 | 1.10.287.210 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.54 | 45.0 | 3.75e-01 | 96.4% | 53.8% |
| 2b3tB01 | 6.10.140.1980 | Special › Helix non-globular › Helix Hairpins › | 0.50 | 41.0 | 3.92e-01 | 92.7% | 78.5% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3973105 | 101.1.7.0 ↗ | alpha arrays › HTH › HTH › Methylated DNA-protein cysteine methyltransferase-C | 0.98 | 80.0 | 6.33e-01 | 85.5% | 47.0% |
| 4943085 | 101.1.7.0 ↗ | alpha arrays › HTH › HTH › Methylated DNA-protein cysteine methyltransferase-C | 0.95 | 79.0 | 6.40e-01 | 87.3% | 52.7% |
| 4987479 | 101.1.7.1 ↗ | alpha arrays › HTH › HTH › Methylated DNA-protein cysteine methyltransferase-C › DNA_binding_1 | 0.94 | 78.0 | 5.54e-01 | 87.3% | 34.3% |
| 5065966 | 101.1.7.0 ↗ | alpha arrays › HTH › HTH › Methylated DNA-protein cysteine methyltransferase-C | 0.92 | 75.0 | 6.04e-01 | 85.5% | 50.5% |
| 135403 | 101.1.7.1 ↗ | alpha arrays › HTH › HTH › Methylated DNA-protein cysteine methyltransferase-C › DNA_binding_1 | 0.90 | 74.0 | 5.89e-01 | 90.9% | 48.0% |
| 3176306 | 101.1.7.1 ↗ | alpha arrays › HTH › HTH › Methylated DNA-protein cysteine methyltransferase-C › DNA_binding_1 | 0.89 | 73.0 | 6.01e-01 | 87.3% | 52.7% |
| 3505461 | 101.1.7.1 ↗ | alpha arrays › HTH › HTH › Methylated DNA-protein cysteine methyltransferase-C › DNA_binding_1 | 0.88 | 76.0 | 6.02e-01 | 90.9% | 53.0% |
| 5035857 | 101.1.7.1 ↗ | alpha arrays › HTH › HTH › Methylated DNA-protein cysteine methyltransferase-C › DNA_binding_1 | 0.84 | 66.0 | 6.95e-01 | 90.9% | 92.0% |
| 4928352 | 101.1.1.537 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DNA_binding_1 | 0.81 | 66.0 | 6.95e-01 | 87.3% | 98.0% |
| 5046858 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.80 | 63.0 | 5.98e-01 | 85.5% | 86.2% |
| 4991879 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.76 | 65.0 | 5.22e-01 | 94.5% | 100.0% |
| 4011519 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.73 | 58.0 | 5.65e-01 | 87.3% | 90.0% |
| 5059062 | 101.1.2.673 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_HVO_0163_N | 0.73 | 60.0 | 5.56e-01 | 96.4% | 72.9% |
| 5032275 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.73 | 59.0 | 4.92e-01 | 92.7% | 73.0% |
| 4993451 | 101.1.1.537 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › DNA_binding_1 | 0.72 | 55.0 | 5.70e-01 | 85.5% | 90.0% |
| 4379552 | 101.1.2.32 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rrf2 | 0.72 | 62.0 | 4.54e-01 | 98.2% | 37.3% |
| 3988793 | 101.1.2.93 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_Mga | 0.71 | 59.0 | 5.07e-01 | 96.4% | 57.8% |
| 3729223 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 54.0 | 5.28e-01 | 87.3% | 81.7% |
| 3351421 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.70 | 57.0 | 5.57e-01 | 90.9% | 86.7% |
| 3238413 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.69 | 55.0 | 5.58e-01 | 94.5% | 90.9% |
| 1103020 | 101.1.1.5 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › TetR_N | 0.69 | 57.0 | 5.27e-01 | 94.5% | 90.3% |
| 3171363 | 605.8.1.2 ↗ | alpha duplicates or obligate multimers › ROP-like › BAS1536-like › BAS1536-like › PF27894 | 0.68 | 48.0 | 4.84e-01 | 89.1% | 74.5% |
| 4609204 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.66 | 56.0 | 5.06e-01 | 94.5% | 85.3% |
| 5048146 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 48.0 | 4.97e-01 | 85.5% | 90.0% |
| 3590622 | 101.1.2.66 ↗ | alpha arrays › HTH › HTH › winged helix domain › Mga | 0.64 | 49.0 | 4.06e-01 | 85.5% | 46.7% |
| 4950831 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 47.0 | 4.48e-01 | 89.1% | 67.1% |
| 3621803 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.62 | 50.0 | 4.62e-01 | 94.5% | 73.3% |
| 3413924 | 101.1.2.45 ↗ | alpha arrays › HTH › HTH › winged helix domain › SAC3_GANP | 0.61 | 48.0 | 4.14e-01 | 96.4% | 70.0% |
| 223908 | 101.1.2.45 ↗ | alpha arrays › HTH › HTH › winged helix domain › SAC3_GANP | 0.60 | 47.0 | 3.98e-01 | 90.9% | 64.1% |
| 3685818 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 43.0 | 4.11e-01 | 92.7% | 98.6% |
| 3909247 | 192.8.1.378 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › BRINP | 0.53 | 41.0 | 3.37e-01 | 100.0% | 80.0% |
| 5011451 | 304.123.1.0 ↗ | a+b two layers › Alpha-beta plaits › PF0523-like › PF0523-like | 0.51 | 43.0 | 3.39e-01 | 96.4% | 54.2% |
D2
medium
residues 56-106
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2kifA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.78 | 71.0 | 5.54e-01 | 100.0% | 50.0% |
| 1xqaA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.55 | 42.0 | 3.34e-01 | 86.3% | 77.3% |
| 1ympA00 | 1.25.40.20 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain | 0.52 | 38.0 | 3.01e-01 | 86.3% | 44.3% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3952584 | 101.1.7.1 ↗ | alpha arrays › HTH › HTH › Methylated DNA-protein cysteine methyltransferase-C › DNA_binding_1 | 0.88 | 74.0 | 5.99e-01 | 100.0% | 51.1% |
| 3973105 | 101.1.7.0 ↗ | alpha arrays › HTH › HTH › Methylated DNA-protein cysteine methyltransferase-C | 0.86 | 79.0 | 6.14e-01 | 100.0% | 50.0% |
| 4193971 | 101.1.7.1 ↗ | alpha arrays › HTH › HTH › Methylated DNA-protein cysteine methyltransferase-C › DNA_binding_1 | 0.79 | 72.0 | 5.51e-01 | 100.0% | 48.2% |
| 4947075 | 101.1.7.0 ↗ | alpha arrays › HTH › HTH › Methylated DNA-protein cysteine methyltransferase-C | 0.79 | 72.0 | 5.69e-01 | 100.0% | 51.0% |
| 5029432 | 101.1.7.1 ↗ | alpha arrays › HTH › HTH › Methylated DNA-protein cysteine methyltransferase-C › DNA_binding_1 | 0.77 | 69.0 | 5.50e-01 | 100.0% | 51.0% |
| 5070099 | 101.1.7.1 ↗ | alpha arrays › HTH › HTH › Methylated DNA-protein cysteine methyltransferase-C › DNA_binding_1 | 0.76 | 67.0 | 5.42e-01 | 98.0% | 54.7% |
| 3696929 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.54 | 43.0 | 4.06e-01 | 100.0% | 84.3% |