←Back to structures
CAKLQF020000019.1__CAH1089686.1__SAMEA5780031_03060__00026
Bact-VirCAKLQF020000019.1__CAH1089686.1__SAMEA5780031_03060__00026
Identity
- Kingdom:
- phage
Quality
95.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 13-53_79-239
Domain cluster:
representative
Pfam (2)
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1khbA01 | 3.40.449.10 | Alpha Beta › 3-Layer(aba) Sandwich › Phosphoenolpyruvate Carboxykinase; domain 1 › Phosphoenolpyruvate Carboxykinase, domain 1 | 0.95 | 93.0 | 8.94e-01 | 100.0% | 93.3% |
| 1ii2B01 | 3.40.449.10 | Alpha Beta › 3-Layer(aba) Sandwich › Phosphoenolpyruvate Carboxykinase; domain 1 › Phosphoenolpyruvate Carboxykinase, domain 1 | 0.79 | 67.0 | 7.18e-01 | 92.6% | 99.4% |
| 1j3bB01 | 3.40.449.10 | Alpha Beta › 3-Layer(aba) Sandwich › Phosphoenolpyruvate Carboxykinase; domain 1 › Phosphoenolpyruvate Carboxykinase, domain 1 | 0.79 | 71.0 | 7.33e-01 | 98.5% | 99.5% |
| 1ylhA01 | 3.40.449.10 | Alpha Beta › 3-Layer(aba) Sandwich › Phosphoenolpyruvate Carboxykinase; domain 1 › Phosphoenolpyruvate Carboxykinase, domain 1 | 0.76 | 71.0 | 7.16e-01 | 100.0% | 99.5% |
| 4lpsA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 28.0 | 2.77e-01 | 72.3% | 46.5% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4882005 | 2004.11.1.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain › PEPCK_N | 0.96 | 95.0 | 8.35e-01 | 100.0% | 87.0% |
| 3481154 | 2004.11.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain | 0.96 | 94.0 | 8.53e-01 | 99.5% | 94.0% |
| 3799411 | 2004.11.1.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain › PEPCK_N | 0.95 | 72.0 | 7.93e-01 | 77.2% | 98.8% |
| 4972021 | 2004.11.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain | 0.91 | 88.0 | 8.20e-01 | 100.0% | 91.3% |
| 4358838 | 2004.11.1.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain › PEPCK_N | 0.90 | 89.0 | 8.39e-01 | 100.0% | 95.7% |
| 4943516 | 2004.11.1.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain › PEPCK_N | 0.90 | 87.0 | 8.18e-01 | 99.5% | 93.6% |
| 5046404 | 2004.11.1.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain › PEPCK_N | 0.90 | 87.0 | 8.11e-01 | 99.5% | 90.4% |
| 3226406 | 2004.11.1.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain › PEPCK_N | 0.90 | 87.0 | 7.79e-01 | 99.0% | 94.6% |
| 4948290 | 2004.11.1.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain › PEPCK_N | 0.90 | 84.0 | 7.06e-01 | 95.5% | 70.4% |
| 4415842 | 2004.11.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain | 0.78 | 63.0 | 6.90e-01 | 98.0% | 98.8% |
| 4223967 | 2004.11.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain › PEPCK_ATP | 0.75 | 71.0 | 7.08e-01 | 98.0% | 99.5% |
| 3184929 | 2004.11.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain › PEPCK_ATP | 0.75 | 72.0 | 7.03e-01 | 100.0% | 99.1% |
| 4036696 | 2004.11.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain › PEPCK_ATP | 0.75 | 71.0 | 7.00e-01 | 100.0% | 95.8% |
| 4071729 | 2004.11.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain › PEPCK_ATP | 0.74 | 71.0 | 6.80e-01 | 100.0% | 98.7% |
| 4108688 | 2004.11.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain › PEPCK_ATP | 0.74 | 70.0 | 7.04e-01 | 98.0% | 99.5% |
| 3609757 | 2004.11.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain | 0.74 | 70.0 | 6.43e-01 | 100.0% | 99.6% |
| 3440980 | 2004.11.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain | 0.72 | 65.0 | 6.68e-01 | 100.0% | 100.0% |
| 3259034 | 2004.11.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain › PEPCK_ATP | 0.72 | 68.0 | 6.78e-01 | 99.5% | 97.1% |
| 4935243 | 2004.11.1.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain › PEPCK_ATP | 0.71 | 65.0 | 6.58e-01 | 98.0% | 97.0% |
| 3586918 | 2004.11.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain | 0.70 | 65.0 | 6.45e-01 | 97.0% | 97.6% |
| 5043201 | 2004.11.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › PEP carboxykinase N-terminal domain › PEP carboxykinase N-terminal domain | 0.69 | 62.0 | 6.29e-01 | 98.0% | 96.0% |
D2
high
residues 242-312_398-609
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00821.24 best | PEPCK_GTP | 274.9 | 1.20e-81 | 74.2% | 55.5% |
| PF00821.24 | PEPCK_GTP | 117.4 | 9.10e-34 | 25.4% | 19.3% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1khbA03 | 3.90.228.20 | Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › | 0.97 | 90.0 | 9.29e-01 | 99.3% | 99.6% |
| 1ii2A03 | 3.90.228.20 | Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › | 0.80 | 70.0 | 7.35e-01 | 97.9% | 99.6% |
| 1qr4A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 14.0 | 2.55e-01 | 79.5% | 70.1% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4279416 | 2004.1.2.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_GTP | 0.96 | 93.0 | 8.61e-01 | 98.9% | 100.0% |
| 3240507 | 2004.1.2.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_GTP | 0.93 | 92.0 | 8.10e-01 | 99.6% | 99.2% |
| 3481160 | 2004.1.2.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain | 0.93 | 92.0 | 8.20e-01 | 100.0% | 99.2% |
| 5046405 | 2004.1.2.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_GTP | 0.91 | 90.0 | 7.88e-01 | 100.0% | 95.3% |
| 4972022 | 2004.1.2.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain | 0.91 | 90.0 | 7.88e-01 | 100.0% | 95.8% |
| 4333056 | 2004.1.2.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_GTP | 0.91 | 89.0 | 7.91e-01 | 100.0% | 96.8% |
| 3226369 | 2004.1.2.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_GTP | 0.86 | 83.0 | 8.16e-01 | 98.6% | 100.0% |
| 5043202 | 2004.1.2.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_ATP | 0.83 | 78.0 | 7.05e-01 | 97.9% | 100.0% |
| 4974958 | 2004.1.2.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain | 0.82 | 77.0 | 6.80e-01 | 97.5% | 99.7% |
| 5065005 | 2004.1.2.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_ATP | 0.80 | 75.0 | 6.96e-01 | 97.5% | 99.4% |
| 5057619 | 2004.1.2.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain | 0.80 | 57.0 | 6.23e-01 | 72.4% | 99.6% |
| 4935244 | 2004.1.2.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_ATP | 0.79 | 74.0 | 7.01e-01 | 96.5% | 100.0% |
| 4978997 | 2004.1.2.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain | 0.78 | 76.0 | 6.59e-01 | 100.0% | 97.8% |
| 4968744 | 2004.1.2.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain | 0.78 | 76.0 | 6.87e-01 | 100.0% | 96.4% |
| 3586917 | 2004.1.2.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_ATP | 0.78 | 75.0 | 7.16e-01 | 99.3% | 99.0% |
| 4517021 | 2004.1.2.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_ATP | 0.77 | 72.0 | 7.01e-01 | 96.5% | 99.7% |
| 4573333 | 2004.1.2.4 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PF28766 | 0.77 | 73.0 | 6.09e-01 | 98.6% | 97.3% |
| 3643957 | 2004.1.2.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_ATP | 0.76 | 72.0 | 6.83e-01 | 97.9% | 100.0% |
| 5040980 | 2004.1.2.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain | 0.75 | 53.0 | 5.68e-01 | 72.1% | 99.2% |
| 3298140 | 2004.1.2.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_ATP | 0.75 | 71.0 | 6.76e-01 | 99.3% | 99.4% |
| 3593180 | 2004.1.2.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain | 0.75 | 71.0 | 6.80e-01 | 99.3% | 99.7% |
| 3676418 | 2004.1.2.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_ATP | 0.72 | 52.0 | 5.99e-01 | 96.1% | 97.6% |
| 3346352 | 2004.1.2.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_ATP | 0.63 | 61.0 | 6.09e-01 | 100.0% | 99.6% |
| 5070172 | 2011.2.1.4 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › HycI | 0.53 | 33.0 | 4.13e-01 | 71.0% | 100.0% |
D3
high
residues 315-391
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00821.24 best | PEPCK_GTP | 106.5 | 1.90e-30 | 100.0% | 21.9% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1khbA02 | 2.170.8.10 | Mainly Beta › Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 2 › Phosphoenolpyruvate Carboxykinase, domain 2 | 0.93 | 89.0 | 7.95e-01 | 100.0% | 79.4% |
| 1ii2A02 | 2.170.8.10 | Mainly Beta › Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 2 › Phosphoenolpyruvate Carboxykinase, domain 2 | 0.82 | 59.0 | 5.86e-01 | 100.0% | 72.2% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4279416 | 2004.1.2.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_GTP | 0.97 | 72.0 | 4.47e-01 | 100.0% | 17.4% |
| 3240507 | 2004.1.2.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_GTP | 0.94 | 91.0 | 5.55e-01 | 100.0% | 24.3% |
| 3481160 | 2004.1.2.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain | 0.93 | 89.0 | 5.50e-01 | 100.0% | 22.7% |
| 5046405 | 2004.1.2.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_GTP | 0.91 | 86.0 | 5.27e-01 | 100.0% | 22.5% |
| 4972022 | 2004.1.2.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain | 0.90 | 84.0 | 5.19e-01 | 100.0% | 22.6% |
| 4333056 | 2004.1.2.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_GTP | 0.90 | 84.0 | 5.20e-01 | 100.0% | 22.7% |
| 5037111 | 2004.1.2.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_GTP | 0.89 | 83.0 | 5.66e-01 | 100.0% | 34.7% |
| 3346352 | 2004.1.2.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_ATP | 0.86 | 62.0 | 4.03e-01 | 100.0% | 20.0% |
| 3298140 | 2004.1.2.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_ATP | 0.86 | 61.0 | 3.89e-01 | 100.0% | 17.5% |
| 3643957 | 2004.1.2.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_ATP | 0.85 | 61.0 | 3.89e-01 | 100.0% | 17.8% |
| 3957598 | 2004.1.2.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_GTP | 0.84 | 79.0 | 5.45e-01 | 100.0% | 37.8% |
| 4517021 | 2004.1.2.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_ATP | 0.83 | 57.0 | 3.69e-01 | 100.0% | 17.8% |
| 5043202 | 2004.1.2.2 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain › PEPCK_ATP | 0.77 | 58.0 | 3.69e-01 | 100.0% | 17.0% |
| 4449763 | 375.14.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) | 0.50 | 29.0 | 3.52e-01 | 89.6% | 90.0% |