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CAKLQF020000019.1__CAH1089744.1__SAMEA5780031_03080__00045

Bact-Vir

CAKLQF020000019.1__CAH1089744.1__SAMEA5780031_03080__00045

Identity

Kingdom:
phage

Quality

93.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-77
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09857.15 best YjhX_toxin 109.6 8.30e-32 100.0% 84.7%
CATH (57)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4yifF00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 62.0 5.05e-01 100.0% 47.7%
2qwwC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 60.0 4.80e-01 100.0% 44.9%
1lnwF01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 59.0 4.86e-01 100.0% 49.2%
3cdhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 59.0 4.76e-01 100.0% 46.3%
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 58.0 5.32e-01 100.0% 65.3%
2fxaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 58.0 4.46e-01 100.0% 39.7%
3s2wG00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 57.0 4.68e-01 100.0% 46.6%
3b73B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 59.0 5.54e-01 100.0% 71.9%
3qyfA03 1.10.10.1690 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Uncharacterised CRISPR-associated protein family, UPF0236 0.70 50.0 5.33e-01 100.0% 90.2%
1mkmB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 55.0 5.51e-01 100.0% 84.2%
4o5vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 56.0 5.73e-01 100.0% 93.0%
1c0wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 56.0 5.66e-01 100.0% 90.4%
2isyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 56.0 4.53e-01 100.0% 47.8%
1stzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 59.0 5.62e-01 100.0% 82.4%
1on2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 55.0 5.55e-01 100.0% 91.7%
2v7fA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 59.0 4.73e-01 100.0% 51.8%
3to7A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 50.0 4.84e-01 100.0% 75.3%
4d7kA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 51.0 4.70e-01 100.0% 65.6%
2zj2A03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 59.0 5.62e-01 100.0% 88.1%
2ip2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 50.0 4.83e-01 100.0% 75.0%
7bqjA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 50.0 4.84e-01 98.6% 77.8%
1xdsB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 45.0 4.22e-01 100.0% 60.9%
3dv8A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 52.0 5.13e-01 100.0% 85.9%
1ft9A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 56.0 5.51e-01 100.0% 97.5%
4jqfA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 52.0 5.29e-01 91.8% 95.9%
2qlzA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 47.0 5.00e-01 94.5% 95.2%
3dpuA03 1.10.10.2200 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.61 50.0 4.96e-01 97.3% 85.3%
1s68A02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.61 42.0 3.64e-01 71.2% 55.8%
2ymaA00 3.10.310.60 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.61 39.0 3.25e-01 76.7% 35.6%
6oinA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 47.0 4.85e-01 100.0% 92.5%
3c7jA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 47.0 4.41e-01 93.2% 68.1%
3tqnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 47.0 4.73e-01 93.2% 86.3%
7pzaA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 52.0 4.98e-01 100.0% 89.5%
2ek5B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 49.0 4.28e-01 97.3% 61.5%
2bgcA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 52.0 4.67e-01 100.0% 76.2%
3edpA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 46.0 4.58e-01 98.6% 84.2%
4tv7D01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 48.0 4.59e-01 100.0% 78.8%
3bwgB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 46.0 4.78e-01 97.3% 94.2%
4h0eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 44.0 4.56e-01 91.8% 88.6%
4i2oA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 49.0 4.78e-01 100.0% 88.7%
1mo9A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 36.0 3.02e-01 75.3% 34.8%
2cw8A03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.56 47.0 3.75e-01 100.0% 53.3%
1eigA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 40.0 4.07e-01 84.9% 78.1%
3pe5A00 3.40.630.190 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein 0.55 41.0 2.81e-01 79.5% 69.0%
2dchX02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.55 42.0 3.72e-01 84.9% 82.0%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 40.0 4.12e-01 87.7% 85.1%
4cbvA02 2.40.50.1020 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain 0.54 46.0 4.03e-01 98.6% 92.4%
4p9fA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 42.0 4.42e-01 93.2% 92.5%
1hw1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 47.0 4.70e-01 100.0% 98.7%
4iglB00 2.180.10.10 Mainly Beta › Shell › RHS repeat-associated core › RHS repeat-associated core 0.53 40.0 2.36e-01 83.6% 88.1%
2ab5A02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.52 39.0 3.28e-01 82.2% 73.9%
3d6wB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 42.0 4.27e-01 93.2% 98.6%
4efjA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.52 39.0 3.30e-01 86.3% 94.3%
4z1xA02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.52 39.0 3.29e-01 86.3% 90.9%
1ffvB04 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.52 36.0 2.71e-01 74.0% 66.7%
2rrfA00 2.30.29.160 Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal 0.51 41.0 3.44e-01 93.2% 66.0%
2nooA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.51 41.0 2.89e-01 91.8% 51.5%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4316044 101.1.2.388 alpha arrays › HTH › HTH › winged helix domain › YjhX_toxin 0.96 92.0 8.44e-01 100.0% 81.1%
5062173 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 55.0 4.67e-01 100.0% 48.7%
4989447 101.1.2.927 alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.75 60.0 5.63e-01 100.0% 70.8%
4966120 101.1.2.934 alpha arrays › HTH › HTH › winged helix domain › HVO_A0261_N 0.75 58.0 5.67e-01 100.0% 76.2%
5051833 101.1.2.143 alpha arrays › HTH › HTH › winged helix domain › HTH_34 0.74 61.0 5.61e-01 100.0% 70.0%
4976799 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 62.0 5.67e-01 100.0% 69.5%
3221366 101.1.2.281 alpha arrays › HTH › HTH › winged helix domain › Tfb2 0.73 48.0 5.25e-01 100.0% 81.7%
5070038 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 56.0 4.98e-01 100.0% 59.0%
5079127 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 60.0 6.01e-01 100.0% 86.7%
5023102 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.72 60.0 5.19e-01 100.0% 59.1%
4946879 101.1.2.652 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.72 59.0 4.79e-01 100.0% 48.5%
4977020 101.1.2.222 alpha arrays › HTH › HTH › winged helix domain › PH0730-like_N 0.72 57.0 5.52e-01 100.0% 77.5%
5074576 101.1.2.927 alpha arrays › HTH › HTH › winged helix domain › DUF7347 0.71 60.0 5.49e-01 100.0% 69.5%
5001553 101.1.2.652 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.71 60.0 4.81e-01 100.0% 48.9%
4977918 101.1.2.210 alpha arrays › HTH › HTH › winged helix domain › CggR_N 0.71 57.0 5.21e-01 100.0% 66.3%
2140756 101.1.2.110 alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.71 57.0 5.02e-01 100.0% 60.6%
5053312 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 60.0 5.46e-01 100.0% 69.5%
5074949 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 61.0 5.61e-01 100.0% 74.4%
3934218 101.1.2.281 alpha arrays › HTH › HTH › winged helix domain › Tfb2 0.70 50.0 3.99e-01 100.0% 38.6%
4957083 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 59.0 5.49e-01 100.0% 74.4%
5027285 101.1.2.21 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.69 58.0 4.48e-01 100.0% 42.6%
4933412 101.1.2.652 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.69 58.0 4.60e-01 100.0% 46.2%
4927049 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.68 60.0 5.34e-01 100.0% 69.0%
4985937 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 63.0 5.25e-01 100.0% 63.3%
4951198 101.1.2.652 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.68 57.0 4.82e-01 100.0% 55.8%
4956886 101.1.2.652 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.68 57.0 4.52e-01 100.0% 47.1%
5047202 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 56.0 5.73e-01 100.0% 94.3%
3283039 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 60.0 4.75e-01 100.0% 49.0%
4942421 101.1.2.21 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.67 56.0 4.80e-01 100.0% 58.3%
5011050 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.67 58.0 4.83e-01 100.0% 56.0%
3178978 101.1.2.178 alpha arrays › HTH › HTH › winged helix domain › HTH_61 0.66 61.0 4.98e-01 100.0% 69.2%
5045559 101.1.2.652 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.66 55.0 4.42e-01 100.0% 47.1%
4021477 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 61.0 5.81e-01 100.0% 85.9%
4986171 101.1.2.150 alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.66 62.0 5.70e-01 100.0% 95.6%
3626211 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 61.0 5.55e-01 100.0% 85.3%
5030872 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 61.0 4.94e-01 100.0% 56.2%
5036721 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 60.0 5.00e-01 100.0% 60.0%
5054005 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 61.0 5.64e-01 100.0% 82.2%
5084071 101.1.2.652 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.65 54.0 4.36e-01 100.0% 47.1%
4965164 101.1.2.392 alpha arrays › HTH › HTH › winged helix domain › SNRNP200_wHTH 0.65 60.0 5.46e-01 100.0% 84.2%
3647082 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 58.0 5.29e-01 100.0% 74.7%
5013300 101.1.2.652 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.65 54.0 4.29e-01 100.0% 45.5%
5052426 101.1.2.21 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repress 0.65 55.0 4.46e-01 100.0% 50.4%
5047904 101.1.2.178 alpha arrays › HTH › HTH › winged helix domain › HTH_61 0.64 59.0 5.49e-01 100.0% 81.1%
5047367 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 58.0 5.43e-01 100.0% 87.8%
3200375 101.1.2.569 alpha arrays › HTH › HTH › winged helix domain › PF28722 0.61 52.0 3.50e-01 93.2% 29.8%
3883088 252.1.1.1 a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.56 39.0 3.99e-01 72.6% 98.6%
4329871 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.55 44.0 3.28e-01 87.7% 91.1%
1159602 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.55 42.0 3.71e-01 84.9% 81.2%
3727451 4099.1.1.4 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-O 0.55 44.0 4.03e-01 87.7% 80.0%
3960268 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 42.0 3.40e-01 86.3% 58.1%
3442788 2484.1.1.110 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE 0.54 41.0 2.96e-01 86.3% 70.2%
3432441 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.54 42.0 2.99e-01 87.7% 80.8%
3809500 2484.1.1.110 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › MULE 0.54 41.0 2.99e-01 86.3% 65.7%
4260408 3987.1.1.0 a+b complex topology › Type III R-M system modification subunit target recognition domain › Type III R-M system modification subunit target recognition domain › Type III R-M system modification subunit target recognition domain 0.53 41.0 3.94e-01 86.3% 71.8%
None 0.53 40.0 3.02e-01 86.3% 67.0%
5019931 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 41.0 3.31e-01 86.3% 75.3%
2529174 3268.1.1.2 a+b two layers › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › BH1974-like_central 0.52 45.0 4.49e-01 97.3% 93.5%
5048072 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.52 33.0 2.52e-01 100.0% 24.0%