←Back to structures
CAKLQF020000020.1__CAH1090442.1__SAMEA5780031_03119__00012
Bact-VirCAKLQF020000020.1__CAH1090442.1__SAMEA5780031_03119__00012
Identity
- Kingdom:
- phage
Quality
95.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 160-265
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00933.28 best | Glyco_hydro_3 | 102.5 | 4.50e-29 | 99.1% | 32.3% |
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1y65A00 | 3.20.20.300 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase, family 3, N-terminal domain | 0.92 | 88.0 | 5.91e-01 | 100.0% | 31.8% |
| 3wo8A01 | 3.20.20.300 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase, family 3, N-terminal domain | 0.91 | 87.0 | 5.88e-01 | 100.0% | 32.7% |
| 3tevB00 | 3.20.20.300 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase, family 3, N-terminal domain | 0.91 | 87.0 | 5.97e-01 | 100.0% | 34.1% |
| 3bmxA01 | 3.20.20.300 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase, family 3, N-terminal domain | 0.91 | 87.0 | 5.64e-01 | 100.0% | 30.5% |
| 4zm6A01 | 3.20.20.300 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase, family 3, N-terminal domain | 0.90 | 86.0 | 5.68e-01 | 100.0% | 30.8% |
| 4yyfA00 | 3.20.20.300 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase, family 3, N-terminal domain | 0.87 | 82.0 | 5.59e-01 | 100.0% | 33.5% |
| 5bu9A00 | 3.20.20.300 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase, family 3, N-terminal domain | 0.86 | 82.0 | 5.56e-01 | 100.0% | 31.7% |
| 7vc6A01 | 3.20.20.300 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase, family 3, N-terminal domain | 0.83 | 77.0 | 5.26e-01 | 100.0% | 32.6% |
| 5z87A01 | 3.20.20.300 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase, family 3, N-terminal domain | 0.82 | 77.0 | 5.19e-01 | 100.0% | 30.1% |
| 3u48B01 | 3.20.20.300 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase, family 3, N-terminal domain | 0.81 | 76.0 | 5.12e-01 | 100.0% | 30.2% |
| 2x41A01 | 3.20.20.300 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase, family 3, N-terminal domain | 0.79 | 74.0 | 5.12e-01 | 99.1% | 39.2% |
| 3or5A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.66 | 41.0 | 3.70e-01 | 87.7% | 46.2% |
| 3qg5C02 | 3.30.160.210 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › DNA double-strand break repair nuclease | 0.63 | 37.0 | 4.31e-01 | 87.7% | 84.5% |
| 8b3yA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.63 | 57.0 | 4.06e-01 | 100.0% | 51.9% |
| 2f02B00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.61 | 54.0 | 3.88e-01 | 99.1% | 71.0% |
| 4hlnA02 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.60 | 39.0 | 3.13e-01 | 89.6% | 32.7% |
| 7exbA01 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.60 | 48.0 | 3.58e-01 | 100.0% | 33.3% |
| 5u9cC02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.59 | 35.0 | 3.97e-01 | 83.0% | 79.2% |
| 3simA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.59 | 52.0 | 3.93e-01 | 100.0% | 52.7% |
| 6m4eA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.59 | 52.0 | 3.36e-01 | 100.0% | 50.1% |
| 3weeB01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.58 | 46.0 | 3.96e-01 | 85.8% | 80.7% |
| 4e84B00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.58 | 51.0 | 3.72e-01 | 100.0% | 70.6% |
| 5jvkA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.57 | 51.0 | 3.65e-01 | 100.0% | 44.9% |
| 5v1qB01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.54 | 47.0 | 3.48e-01 | 97.2% | 47.9% |
| 3b5eB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.54 | 47.0 | 3.84e-01 | 100.0% | 77.0% |
| 2oogD00 | 3.20.20.190 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase | 0.54 | 47.0 | 3.58e-01 | 100.0% | 73.9% |
| 3jy6D02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 46.0 | 4.33e-01 | 100.0% | 87.4% |
| 1jbkA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 41.0 | 3.46e-01 | 100.0% | 48.1% |
| 2vxoA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.52 | 43.0 | 3.43e-01 | 90.6% | 77.8% |
| 2vk2A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 46.0 | 4.01e-01 | 100.0% | 78.2% |
| 3bdiA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 45.0 | 3.72e-01 | 100.0% | 73.9% |
| 3hsiA02 | 3.30.870.10 | Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A | 0.52 | 45.0 | 3.65e-01 | 97.2% | 80.2% |
| 5bq3A02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 45.0 | 4.04e-01 | 99.1% | 80.0% |
| 3dlaB01 | 3.60.110.10 | Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase | 0.51 | 44.0 | 3.26e-01 | 100.0% | 44.4% |
| 4rsmA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 45.0 | 4.05e-01 | 99.1% | 84.0% |
| 4alzA01 | 3.30.1340.30 | Alpha Beta › 2-Layer Sandwich › Histidine-containing Protein; Chain: A; › | 0.51 | 28.0 | 3.45e-01 | 84.0% | 90.3% |
| 2c20A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 44.0 | 3.65e-01 | 99.1% | 98.0% |
ECOD (44)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3963242 | 2002.1.1.39 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_3 | 0.94 | 91.0 | 5.99e-01 | 100.0% | 30.1% |
| 4165029 | 2002.1.1.39 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_3 | 0.93 | 91.0 | 5.97e-01 | 100.0% | 30.1% |
| 4295361 | 2002.1.1.39 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_3 | 0.93 | 91.0 | 5.99e-01 | 100.0% | 30.7% |
| 4136028 | 2002.1.1.39 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_3 | 0.92 | 88.0 | 5.91e-01 | 100.0% | 32.4% |
| 3788659 | 2002.1.1.39 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_3 | 0.92 | 88.0 | 5.76e-01 | 100.0% | 29.7% |
| 1481678 | 2002.1.1.39 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_3 | 0.91 | 86.0 | 5.84e-01 | 100.0% | 32.2% |
| 4020920 | 2002.1.1.39 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_3 | 0.91 | 87.0 | 5.70e-01 | 100.0% | 29.2% |
| 144467 | 2002.1.1.39 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_3 | 0.91 | 87.0 | 5.98e-01 | 100.0% | 34.3% |
| 4588510 | 2002.1.1.39 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_3 | 0.91 | 87.0 | 5.54e-01 | 100.0% | 27.9% |
| 1179286 | 2002.1.1.39 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_3 | 0.90 | 87.0 | 5.69e-01 | 100.0% | 29.0% |
| 1716883 | 2002.1.1.39 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_3 | 0.90 | 86.0 | 5.68e-01 | 100.0% | 30.7% |
| 3502747 | 2002.1.1.39 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_3 | 0.88 | 84.0 | 5.69e-01 | 100.0% | 31.7% |
| 2808396 | 2002.1.1.39 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_3 | 0.88 | 84.0 | 5.65e-01 | 100.0% | 31.5% |
| 2142019 | 2002.1.1.39 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_3 | 0.88 | 84.0 | 5.49e-01 | 100.0% | 30.7% |
| 4310156 | 2002.1.1.39 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_3 | 0.88 | 84.0 | 5.47e-01 | 100.0% | 30.6% |
| 3952059 | 2002.1.1.39 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_3 | 0.86 | 82.0 | 5.51e-01 | 100.0% | 32.0% |
| 1562375 | 2002.1.1.39 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_3 | 0.86 | 82.0 | 5.56e-01 | 100.0% | 31.7% |
| 4837521 | 2002.1.1.39 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_3 | 0.83 | 78.0 | 5.17e-01 | 100.0% | 28.2% |
| 4853071 | 2002.1.1.39 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_3 | 0.78 | 73.0 | 4.99e-01 | 100.0% | 34.7% |
| 3431396 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.65 | 48.0 | 4.05e-01 | 100.0% | 46.1% |
| 3969646 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.63 | 56.0 | 4.04e-01 | 100.0% | 61.3% |
| 3956765 | 2003.6.1.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › PfkB | 0.62 | 56.0 | 3.97e-01 | 100.0% | 69.4% |
| 5019986 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.60 | 47.0 | 3.62e-01 | 94.3% | 35.3% |
| 3602370 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.58 | 52.0 | 3.89e-01 | 100.0% | 46.7% |
| 3380918 | 2002.1.1.134 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_2 | 0.58 | 52.0 | 3.50e-01 | 100.0% | 38.7% |
| 4503293 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.57 | 43.0 | 2.96e-01 | 100.0% | 21.5% |
| 1933305 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.57 | 51.0 | 3.65e-01 | 100.0% | 45.1% |
| 4961012 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.57 | 51.0 | 3.86e-01 | 100.0% | 49.8% |
| 5072528 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.56 | 50.0 | 3.81e-01 | 100.0% | 52.2% |
| 3962182 | 7577.1.1.0 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases | 0.56 | 49.0 | 3.49e-01 | 98.1% | 60.3% |
| 4009532 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.56 | 50.0 | 3.71e-01 | 100.0% | 52.4% |
| 3597605 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.55 | 45.0 | 3.85e-01 | 87.7% | 62.9% |
| 4950877 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.54 | 48.0 | 3.68e-01 | 100.0% | 49.8% |
| 4863100 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.54 | 47.0 | 3.43e-01 | 100.0% | 55.0% |
| 3401772 | 2484.1.1.72 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › YqgF | 0.53 | 43.0 | 3.50e-01 | 87.7% | 56.0% |
| 5045886 | 2494.1.1.2 ↗ | a/b three-layered sandwiches › DTD-like › DTD-like (Pfam 02580) › DTD-like (Pfam 02580) › tRNA-Thr_ED | 0.53 | 43.0 | 4.04e-01 | 89.6% | 80.6% |
| 3602637 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.53 | 45.0 | 3.64e-01 | 100.0% | 47.4% |
| 4658274 | 2484.1.1.40 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX | 0.52 | 43.0 | 3.95e-01 | 89.6% | 69.6% |
| None | — | 0.52 | 44.0 | 3.72e-01 | 100.0% | 53.7% | |
| 4290521 | 2484.1.1.91 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Exu_RNase_H_like | 0.52 | 42.0 | 3.22e-01 | 90.6% | 76.2% |
| 3513877 | 2002.1.1.37 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ribul_P_3_epim | 0.51 | 42.0 | 3.31e-01 | 99.1% | 42.2% |
| 3057970 | 7590.1.1.0 ↗ | a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs | 0.51 | 45.0 | 3.63e-01 | 100.0% | 71.6% |
| 4955103 | 247.1.1.1 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B | 0.50 | 43.0 | 3.40e-01 | 95.3% | 81.7% |
| 4156741 | 2007.1.1.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › Peptidase_S66 | 0.50 | 43.0 | 3.86e-01 | 99.1% | 83.7% |