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CAKLQF020000020.1__CAH1090503.1__SAMEA5780031_03161__00053
Bact-VirCAKLQF020000020.1__CAH1090503.1__SAMEA5780031_03161__00053
Identity
- Kingdom:
- phage
Quality
87.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-72_89-188_241-276
Domain cluster:
rep: putative_eIF-2gamma__YP_003970112__Cafeteria_roenbergensis_virus_BV-PW1__693272__D19-198
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00009.34 best | GTP_EFTU | 129.6 | 1.50e-37 | 100.0% | 96.3% |
| PF01926.30 | MMR_HSR1 | 29.7 | 8.50e-07 | 58.2% | 99.1% |
CATH (66)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7uvpA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.88 | 85.0 | 7.46e-01 | 99.0% | 99.6% |
| 2dy1A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.88 | 86.0 | 7.42e-01 | 100.0% | 95.3% |
| 2yweA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.80 | 61.0 | 6.72e-01 | 100.0% | 92.6% |
| 1darA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.79 | 77.0 | 6.86e-01 | 100.0% | 92.6% |
| 3geeA03 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.77 | 49.0 | 5.87e-01 | 100.0% | 93.2% |
| 1mkyA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.76 | 58.0 | 6.55e-01 | 97.4% | 98.7% |
| 3wndA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.75 | 59.0 | 6.32e-01 | 100.0% | 90.7% |
| 4zciA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.75 | 62.0 | 6.55e-01 | 100.0% | 94.3% |
| 4ac9C01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.75 | 63.0 | 6.47e-01 | 100.0% | 91.3% |
| 4dcuA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.74 | 50.0 | 5.93e-01 | 100.0% | 95.0% |
| 1puiA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.74 | 56.0 | 6.04e-01 | 100.0% | 89.3% |
| 5dn8A02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.74 | 58.0 | 6.40e-01 | 100.0% | 96.9% |
| 4b3xA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.74 | 59.0 | 6.31e-01 | 100.0% | 93.0% |
| 4pyrA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.73 | 39.0 | 4.90e-01 | 90.7% | 83.3% |
| 1mkyA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.72 | 54.0 | 5.99e-01 | 99.5% | 94.2% |
| 5izlA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.72 | 64.0 | 6.68e-01 | 100.0% | 98.4% |
| 2h5eA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.72 | 68.0 | 6.96e-01 | 97.9% | 100.0% |
| 1zunB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.71 | 65.0 | 6.53e-01 | 100.0% | 92.9% |
| 3euaF01 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.71 | 47.0 | 5.15e-01 | 100.0% | 81.4% |
| 1sulB00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.70 | 59.0 | 5.93e-01 | 100.0% | 86.7% |
| 3qq5A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.70 | 51.0 | 5.60e-01 | 100.0% | 89.0% |
| 1wlsA02 | 3.40.50.40 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.69 | 38.0 | 4.53e-01 | 100.0% | 79.2% |
| 3t1oA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.69 | 60.0 | 6.05e-01 | 100.0% | 91.1% |
| 3p26A01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.68 | 64.0 | 6.03e-01 | 100.0% | 84.2% |
| 2a3nA01 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.68 | 43.0 | 4.72e-01 | 100.0% | 75.9% |
| 1aipA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.66 | 58.0 | 6.01e-01 | 100.0% | 96.1% |
| 3u80A00 | 3.40.50.9100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dehydroquinase, class II | 0.66 | 42.0 | 5.09e-01 | 100.0% | 96.9% |
| 5h7kA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.65 | 63.0 | 5.77e-01 | 100.0% | 90.9% |
| 3fxaA00 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.65 | 45.0 | 4.57e-01 | 99.5% | 70.2% |
| 1g7sA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.65 | 63.0 | 5.97e-01 | 100.0% | 93.2% |
| 2d6fA03 | 3.40.50.40 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.65 | 38.0 | 4.47e-01 | 100.0% | 81.2% |
| 3shoA00 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.65 | 43.0 | 4.41e-01 | 99.5% | 68.8% |
| 2au3A03 | 3.40.1360.10 | Alpha Beta › 3-Layer(aba) Sandwich › Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 › | 0.64 | 37.0 | 4.47e-01 | 100.0% | 86.3% |
| 1n0uA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.64 | 60.0 | 5.84e-01 | 100.0% | 90.5% |
| 1qv9A01 | 3.40.50.10830 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) | 0.63 | 45.0 | 5.04e-01 | 100.0% | 92.2% |
| 3dmyA02 | 3.40.50.261 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Succinyl-CoA synthetase domains | 0.62 | 39.0 | 4.54e-01 | 100.0% | 87.1% |
| 3ehdA00 | 3.40.50.450 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.60 | 47.0 | 5.19e-01 | 100.0% | 99.4% |
| 2xblD00 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.59 | 45.0 | 4.49e-01 | 99.5% | 76.4% |
| 1ni4A00 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.59 | 52.0 | 4.22e-01 | 94.8% | 57.7% |
| 4ydrA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.58 | 46.0 | 4.97e-01 | 100.0% | 97.0% |
| 3ke0A01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.56 | 47.0 | 3.79e-01 | 90.7% | 91.1% |
| 7tbvA03 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 39.0 | 4.31e-01 | 95.9% | 89.6% |
| 2y7eB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.55 | 47.0 | 4.23e-01 | 92.8% | 95.0% |
| 4kxvA02 | 3.40.50.970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.55 | 42.0 | 4.28e-01 | 100.0% | 80.9% |
| 3cvjC00 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.54 | 46.0 | 4.27e-01 | 100.0% | 71.8% |
| 4gxwB00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.54 | 46.0 | 3.81e-01 | 92.8% | 84.1% |
| 2qgqA01 | 3.80.30.20 | Alpha Beta › Alpha-Beta Horseshoe › pyruvate-formate lyase- activating enzyme › tm_1862 like domain | 0.54 | 40.0 | 3.89e-01 | 74.7% | 97.2% |
| 3rrxA02 | 3.40.50.1700 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycoside hydrolase family 3 C-terminal domain | 0.54 | 43.0 | 4.04e-01 | 99.5% | 69.4% |
| 1rqeA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.53 | 45.0 | 4.02e-01 | 91.2% | 89.1% |
| 3q41A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 42.0 | 4.30e-01 | 100.0% | 83.8% |
| 3cjpA00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.53 | 45.0 | 4.13e-01 | 91.8% | 96.9% |
| 2amxB00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.53 | 48.0 | 3.96e-01 | 100.0% | 84.8% |
| 2v4uA00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.52 | 48.0 | 4.33e-01 | 100.0% | 95.5% |
| 2wqpA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.52 | 46.0 | 4.15e-01 | 95.9% | 93.0% |
| 1iwpA00 | 3.20.20.350 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Diol/glycerol dehydratase, large subunit | 0.51 | 43.0 | 3.16e-01 | 90.7% | 67.6% |
| 4zdjA02 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.51 | 47.0 | 4.38e-01 | 100.0% | 96.3% |
| 3w0lD02 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.51 | 47.0 | 3.85e-01 | 99.5% | 55.6% |
| 1atzB00 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.51 | 45.0 | 4.58e-01 | 100.0% | 97.9% |
| 4cn8A02 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.51 | 44.0 | 4.51e-01 | 100.0% | 95.3% |
| 1wmdA01 | 3.40.50.200 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain | 0.51 | 46.0 | 3.94e-01 | 100.0% | 76.3% |
| 4igiA00 | 3.40.50.410 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › von Willebrand factor, type A domain | 0.50 | 44.0 | 4.41e-01 | 100.0% | 92.4% |
| 1bqcA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.50 | 46.0 | 3.98e-01 | 100.0% | 98.7% |
| 2w7tA00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.50 | 46.0 | 4.16e-01 | 100.0% | 95.1% |
| 2yx0A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.50 | 43.0 | 3.62e-01 | 91.2% | 91.0% |
| 3lpaA00 | 3.40.50.200 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Peptidase S8/S53 domain | 0.50 | 46.0 | 3.82e-01 | 100.0% | 80.0% |
| 1twdA00 | 3.20.20.380 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Copper homeostasis (CutC) domain | 0.50 | 42.0 | 3.98e-01 | 90.2% | 94.4% |
ECOD (100)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4258337 | 2004.1.1.414 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 | 0.91 | 89.0 | 7.47e-01 | 100.0% | 95.6% |
| 4273274 | 2004.1.1.414 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 | 0.91 | 89.0 | 7.66e-01 | 100.0% | 95.3% |
| 4012803 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.91 | 89.0 | 7.31e-01 | 100.0% | 91.6% |
| 4384861 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.91 | 89.0 | 7.02e-01 | 100.0% | 81.2% |
| 4236206 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.91 | 89.0 | 7.13e-01 | 100.0% | 84.8% |
| 4347789 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.91 | 89.0 | 7.05e-01 | 100.0% | 90.6% |
| 4559415 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.91 | 88.0 | 6.39e-01 | 100.0% | 60.9% |
| 4271663 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.90 | 88.0 | 7.92e-01 | 100.0% | 96.4% |
| 3705011 | 2004.1.1.414 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 | 0.90 | 88.0 | 7.22e-01 | 100.0% | 92.1% |
| 3926583 | 2004.1.1.414 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 | 0.90 | 87.0 | 7.21e-01 | 100.0% | 87.1% |
| 4082601 | 2004.1.1.414 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 | 0.89 | 87.0 | 7.64e-01 | 100.0% | 96.2% |
| 3499110 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.89 | 87.0 | 6.70e-01 | 100.0% | 88.5% |
| 4296626 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.89 | 87.0 | 7.20e-01 | 100.0% | 89.2% |
| 4293133 | 2004.1.1.414 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 | 0.89 | 86.0 | 7.74e-01 | 100.0% | 97.6% |
| 4664191 | 2004.1.1.414 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 | 0.89 | 86.0 | 7.11e-01 | 100.0% | 87.7% |
| 4131084 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.88 | 86.0 | 7.31e-01 | 100.0% | 93.0% |
| 4682626 | 2004.1.1.414 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 | 0.88 | 86.0 | 7.28e-01 | 100.0% | 90.3% |
| 2987711 | 2004.1.1.414 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 | 0.88 | 85.0 | 7.34e-01 | 100.0% | 95.0% |
| 4355484 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.88 | 85.0 | 7.82e-01 | 100.0% | 97.5% |
| 3594456 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.88 | 77.0 | 6.56e-01 | 90.2% | 98.6% |
| 4433789 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.87 | 85.0 | 7.27e-01 | 100.0% | 94.0% |
| 4068176 | 2004.1.1.414 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 | 0.86 | 83.0 | 7.03e-01 | 100.0% | 90.0% |
| 4521047 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.84 | 72.0 | 6.92e-01 | 100.0% | 79.1% |
| None | — | 0.84 | 68.0 | 6.11e-01 | 100.0% | 64.0% | |
| 4225520 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.84 | 68.0 | 6.99e-01 | 100.0% | 86.5% |
| None | — | 0.84 | 68.0 | 5.08e-01 | 100.0% | 39.0% | |
| None | — | 0.84 | 68.0 | 5.03e-01 | 100.0% | 38.1% | |
| 3958996 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.84 | 71.0 | 6.51e-01 | 87.1% | 98.3% |
| 3387184 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.83 | 68.0 | 5.55e-01 | 100.0% | 50.8% |
| 3667742 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.83 | 68.0 | 6.21e-01 | 100.0% | 67.1% |
| 3634067 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.83 | 68.0 | 7.00e-01 | 100.0% | 87.0% |
| 3849755 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.83 | 68.0 | 4.91e-01 | 100.0% | 35.0% |
| 3596647 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.83 | 67.0 | 6.23e-01 | 100.0% | 68.1% |
| 4481853 | 2004.1.1.414 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 | 0.83 | 65.0 | 6.58e-01 | 100.0% | 80.5% |
| 5077047 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.83 | 66.0 | 6.76e-01 | 100.0% | 83.2% |
| 4657200 | 7526.1.1.0 ↗ | a/b three-layered sandwiches › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 › Initiation factor IF2/eIF5b, domain 3 | 0.83 | 68.0 | 4.87e-01 | 100.0% | 34.3% |
| 4040933 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.83 | 72.0 | 7.25e-01 | 100.0% | 88.7% |
| None | — | 0.82 | 68.0 | 5.95e-01 | 100.0% | 61.9% | |
| 3605116 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.82 | 72.0 | 6.94e-01 | 100.0% | 81.9% |
| 5015223 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.81 | 62.0 | 6.96e-01 | 99.0% | 97.4% |
| 5022643 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.80 | 66.0 | 7.03e-01 | 100.0% | 95.9% |
| 3700337 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.78 | 73.0 | 6.83e-01 | 95.4% | 83.1% |
| 4023921 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.77 | 65.0 | 6.57e-01 | 100.0% | 86.2% |
| 3592486 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.77 | 71.0 | 7.18e-01 | 100.0% | 95.4% |
| 4885771 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.76 | 62.0 | 6.20e-01 | 100.0% | 82.0% |
| 3717567 | 2004.1.1.414 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 | 0.76 | 73.0 | 6.55e-01 | 100.0% | 87.5% |
| 3594623 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.76 | 73.0 | 6.71e-01 | 100.0% | 93.8% |
| 3711623 | 2004.1.1.414 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 | 0.75 | 73.0 | 6.38e-01 | 100.0% | 82.6% |
| 3506957 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.75 | 73.0 | 5.70e-01 | 100.0% | 87.1% |
| 3238992 | 2004.1.1.414 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 | 0.75 | 73.0 | 5.89e-01 | 100.0% | 94.5% |
| 3788976 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.75 | 73.0 | 4.96e-01 | 100.0% | 59.8% |
| 4029769 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.75 | 73.0 | 5.78e-01 | 100.0% | 92.8% |
| 3693663 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.75 | 73.0 | 5.52e-01 | 100.0% | 93.4% |
| 4109223 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.75 | 61.0 | 6.12e-01 | 100.0% | 83.1% |
| 3458988 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.74 | 72.0 | 5.90e-01 | 100.0% | 95.0% |
| 4943443 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.74 | 72.0 | 6.48e-01 | 100.0% | 92.4% |
| 3918999 | 2004.1.1.414 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 | 0.74 | 72.0 | 5.64e-01 | 100.0% | 94.7% |
| 3596671 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.74 | 72.0 | 5.87e-01 | 100.0% | 94.4% |
| 4270477 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.74 | 62.0 | 6.06e-01 | 100.0% | 80.0% |
| 3255895 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.74 | 72.0 | 5.60e-01 | 100.0% | 94.2% |
| 4423913 | 2004.1.1.414 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 | 0.74 | 59.0 | 4.53e-01 | 100.0% | 40.3% |
| 3330912 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.74 | 70.0 | 6.74e-01 | 100.0% | 88.8% |
| 4075154 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.74 | 71.0 | 5.68e-01 | 100.0% | 92.8% |
| 4650535 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.73 | 62.0 | 6.01e-01 | 100.0% | 79.5% |
| 4193930 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.73 | 62.0 | 4.79e-01 | 100.0% | 44.5% |
| 3271582 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.73 | 62.0 | 6.06e-01 | 100.0% | 81.0% |
| None | — | 0.73 | 62.0 | 6.47e-01 | 100.0% | 93.9% | |
| 3824741 | 2004.1.1.414 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 | 0.73 | 71.0 | 5.52e-01 | 100.0% | 85.8% |
| None | — | 0.73 | 61.0 | 4.48e-01 | 100.0% | 37.1% | |
| 3838532 | 327.9.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Probable GTPase Der, C-terminal domain › Probable GTPase Der, C-terminal domain | 0.73 | 61.0 | 4.49e-01 | 100.0% | 37.1% |
| 3483403 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.73 | 70.0 | 5.56e-01 | 100.0% | 90.0% |
| 3212111 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.72 | 70.0 | 5.59e-01 | 100.0% | 89.6% |
| 3786739 | 2004.1.1.414 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 | 0.72 | 70.0 | 5.26e-01 | 100.0% | 80.5% |
| 4180113 | 2004.1.1.414 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 | 0.72 | 62.0 | 6.32e-01 | 100.0% | 90.0% |
| 3754837 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.72 | 70.0 | 5.57e-01 | 100.0% | 60.3% |
| 3248411 | 2004.1.1.15 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU,EFTUD2 | 0.72 | 70.0 | 5.31e-01 | 100.0% | 81.7% |
| 3470433 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.72 | 70.0 | 6.25e-01 | 100.0% | 82.4% |
| 3987369 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.72 | 68.0 | 6.74e-01 | 100.0% | 95.0% |
| 4945651 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.72 | 69.0 | 6.43e-01 | 100.0% | 89.4% |
| 3166722 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.72 | 69.0 | 5.31e-01 | 100.0% | 79.6% |
| 4028065 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.72 | 68.0 | 6.61e-01 | 100.0% | 90.0% |
| 4884264 | 2004.1.1.779 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1, EFTUD2 | 0.72 | 69.0 | 5.30e-01 | 100.0% | 80.9% |
| 4029961 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.72 | 69.0 | 5.27e-01 | 100.0% | 83.5% |
| 4071658 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.71 | 61.0 | 6.40e-01 | 100.0% | 95.0% |
| 4305615 | 2004.1.1.414 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 | 0.71 | 61.0 | 4.71e-01 | 100.0% | 45.1% |
| 4584508 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.71 | 61.0 | 5.25e-01 | 100.0% | 60.0% |
| 3281192 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.71 | 60.0 | 6.14e-01 | 100.0% | 91.4% |
| 3418933 | 2004.1.1.414 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 | 0.70 | 62.0 | 6.08e-01 | 100.0% | 85.9% |
| 3657220 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.70 | 62.0 | 4.56e-01 | 100.0% | 40.0% |
| 4656868 | 2004.1.1.414 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU, MMR_HSR1 | 0.70 | 59.0 | 6.09e-01 | 100.0% | 91.4% |
| None | — | 0.70 | 62.0 | 4.60e-01 | 100.0% | 41.4% | |
| 4110968 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.70 | 60.0 | 5.80e-01 | 100.0% | 80.0% |
| 4365048 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.70 | 60.0 | 6.13e-01 | 100.0% | 91.9% |
| 4501010 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.69 | 62.0 | 5.73e-01 | 100.0% | 76.6% |
| 3593952 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.69 | 67.0 | 6.43e-01 | 100.0% | 93.0% |
| 3558554 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.69 | 67.0 | 6.33e-01 | 100.0% | 93.2% |
| 4027928 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.69 | 66.0 | 6.32e-01 | 100.0% | 97.3% |
| 4059155 | 2004.1.1.474 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N, MMR_HSR1 | 0.68 | 60.0 | 6.06e-01 | 100.0% | 91.6% |
| 3997548 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.65 | 61.0 | 5.69e-01 | 100.0% | 80.9% |
| 3965508 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.59 | 56.0 | 4.33e-01 | 100.0% | 49.6% |
D2
high
residues 393-529
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF16658.12 best | RF3_C | 154.9 | 1.50e-45 | 90.5% | 95.4% |
| PF14492.13 | EFG_III | 27.8 | 2.90e-06 | 52.5% | 89.3% |
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2h5eA03 | 3.30.70.3280 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptide chain release factor 3, domain III | 0.99 | 95.0 | 9.56e-01 | 100.0% | 97.8% |
| 3tj8A02 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.71 | 39.0 | 5.01e-01 | 76.6% | 97.3% |
| 1jwwA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.68 | 40.0 | 5.09e-01 | 83.2% | 100.0% |
| 1s7hA02 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 38.0 | 4.79e-01 | 81.8% | 97.6% |
| 3vtiA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 41.0 | 4.84e-01 | 76.6% | 91.7% |
| 3dfeA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 38.0 | 4.71e-01 | 95.6% | 97.6% |
| 1zpwX00 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 38.0 | 4.65e-01 | 80.3% | 98.8% |
| 2hiyA01 | 3.30.70.1280 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › SP0830-like domains | 0.63 | 38.0 | 4.64e-01 | 81.8% | 94.3% |
| 3trgA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 41.0 | 4.83e-01 | 78.1% | 96.8% |
| 1lxnA00 | 3.30.70.930 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 42.0 | 4.87e-01 | 85.4% | 98.0% |
| 4lvnP00 | 3.30.70.2380 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 36.0 | 4.46e-01 | 81.8% | 97.5% |
| 1ybtB00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.60 | 45.0 | 4.19e-01 | 83.9% | 62.2% |
| 2xhcA01 | 3.30.70.940 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › NusG, N-terminal domain | 0.60 | 41.0 | 4.75e-01 | 90.5% | 100.0% |
| 3ofgB00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.59 | 37.0 | 4.53e-01 | 83.9% | 100.0% |
| 2cpdA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.59 | 33.0 | 4.24e-01 | 81.0% | 100.0% |
| 1fx2A00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.59 | 47.0 | 3.91e-01 | 84.7% | 66.4% |
| 1vbkA01 | 3.30.70.1510 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › THUMP domain-like | 0.59 | 35.0 | 4.31e-01 | 81.8% | 97.6% |
| 4aukA01 | 3.30.70.2810 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.57 | 33.0 | 4.07e-01 | 81.0% | 97.5% |
| 1x4dA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.57 | 37.0 | 4.16e-01 | 88.3% | 87.3% |
| 2bopA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.57 | 35.0 | 4.28e-01 | 83.2% | 100.0% |
| 1z1dB00 | 3.40.1310.20 | Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › | 0.56 | 40.0 | 4.13e-01 | 95.6% | 77.9% |
| 1zj8A02 | 3.90.480.10 | Alpha Beta › Alpha-Beta Complex › Sulfite Reductase Hemoprotein; domain 2 › Sulfite Reductase Hemoprotein;Domain 2 | 0.56 | 40.0 | 3.87e-01 | 76.6% | 66.4% |
| 3mr7A00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.56 | 43.0 | 3.95e-01 | 83.2% | 63.6% |
| 1s5jA03 | 3.90.1600.10 | Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain | 0.54 | 44.0 | 4.23e-01 | 86.1% | 89.2% |
| 1weyA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.54 | 36.0 | 4.00e-01 | 89.8% | 88.5% |
| 1qm9A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.53 | 37.0 | 4.17e-01 | 75.2% | 99.0% |
| 2kjwA00 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.53 | 36.0 | 4.17e-01 | 99.3% | 99.0% |
| 4erdA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.52 | 38.0 | 4.19e-01 | 89.8% | 97.2% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4636769 | 304.24.1.4 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › RF3_C | 0.99 | 95.0 | 9.66e-01 | 99.3% | 100.0% |
| 4358932 | 304.24.1.4 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › RF3_C | 0.98 | 95.0 | 9.62e-01 | 98.5% | 100.0% |
| 4315538 | 304.24.1.4 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › RF3_C | 0.97 | 94.0 | 9.23e-01 | 100.0% | 94.5% |
| 4056781 | 304.24.1.4 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › RF3_C | 0.89 | 85.0 | 8.44e-01 | 100.0% | 99.3% |
| 3958992 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.87 | 50.0 | 6.59e-01 | 73.0% | 98.8% |
| 3519467 | 304.24.1.4 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › RF3_C | 0.87 | 80.0 | 8.12e-01 | 99.3% | 98.5% |
| 4502459 | 304.24.1.4 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › RF3_C | 0.86 | 82.0 | 8.17e-01 | 100.0% | 98.6% |
| 3505715 | 304.24.1.3 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III | 0.86 | 50.0 | 6.53e-01 | 83.9% | 98.8% |
| 4455319 | 304.24.1.3 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III | 0.86 | 50.0 | 6.53e-01 | 83.9% | 100.0% |
| 2987712 | 304.24.1.3 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III | 0.85 | 49.0 | 6.45e-01 | 83.9% | 100.0% |
| 3281154 | 304.24.1.3 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III | 0.85 | 49.0 | 6.35e-01 | 73.7% | 98.8% |
| 3611003 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.83 | 49.0 | 6.32e-01 | 84.7% | 100.0% |
| 3683611 | 304.24.1.3 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III | 0.82 | 49.0 | 6.21e-01 | 85.4% | 96.5% |
| 4011415 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.81 | 49.0 | 6.11e-01 | 85.4% | 96.5% |
| 3997731 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.80 | 47.0 | 6.07e-01 | 84.7% | 100.0% |
| 4025551 | 304.24.1.3 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III | 0.80 | 47.0 | 5.64e-01 | 84.7% | 85.3% |
| 3381288 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.80 | 49.0 | 6.15e-01 | 85.4% | 98.8% |
| 3471440 | 304.24.1.3 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III | 0.80 | 49.0 | 6.20e-01 | 85.4% | 100.0% |
| 3596989 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.79 | 46.0 | 5.93e-01 | 83.9% | 100.0% |
| 1877679 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.78 | 50.0 | 5.84e-01 | 92.0% | 89.0% |
| 2776431 | 304.24.1.3 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III | 0.77 | 45.0 | 5.79e-01 | 84.7% | 98.8% |
| 3972123 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.77 | 52.0 | 5.91e-01 | 96.4% | 89.5% |
| 4030665 | 304.24.1.3 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III | 0.77 | 49.0 | 6.06e-01 | 85.4% | 98.9% |
| 4089543 | 304.24.1.21 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C+EFG_III | 0.77 | 51.0 | 4.45e-01 | 90.5% | 46.5% |
| 4939299 | 304.24.1.3 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III | 0.77 | 49.0 | 6.06e-01 | 93.4% | 98.9% |
| 4133554 | 304.24.1.21 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C+EFG_III | 0.77 | 51.0 | 4.47e-01 | 89.8% | 48.4% |
| 4098328 | 304.24.1.3 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_III | 0.73 | 52.0 | 5.79e-01 | 96.4% | 90.0% |
| 3941725 | 304.28.1.3 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › SecD-TM1 | 0.65 | 39.0 | 4.79e-01 | 70.8% | 95.3% |
| 3838420 | 304.110.1.0 ↗ | a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like | 0.65 | 42.0 | 5.07e-01 | 74.5% | 100.0% |
| 4523274 | 304.24.1.1 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C | 0.64 | 49.0 | 4.29e-01 | 92.0% | 55.4% |
| 5061460 | 304.110.1.1 ↗ | a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › Acylphosphatase | 0.64 | 40.0 | 4.78e-01 | 74.5% | 95.6% |
| 4156195 | 304.110.1.1 ↗ | a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › Acylphosphatase | 0.63 | 40.0 | 4.66e-01 | 77.4% | 89.9% |
| 4101334 | 304.28.1.3 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › SecD-TM1 | 0.62 | 37.0 | 4.47e-01 | 82.5% | 91.1% |
| 1890579 | 304.9.1.16 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_3 | 0.61 | 42.0 | 4.54e-01 | 92.7% | 82.9% |
| 278624 | 304.48.1.4 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Guanylate_cyc | 0.60 | 45.0 | 4.19e-01 | 83.9% | 62.2% |
| 3504994 | 304.163.1.1 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › R1_ABCA1 | 0.60 | 41.0 | 4.69e-01 | 93.4% | 97.0% |
| 5062185 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.59 | 38.0 | 4.61e-01 | 86.1% | 98.9% |
| 4648413 | 304.4.1.20 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg2 | 0.59 | 40.0 | 4.66e-01 | 97.8% | 96.0% |
| 4027198 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.59 | 39.0 | 4.46e-01 | 96.4% | 92.0% |
| 3726962 | 304.9.1.94 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_YTH1 | 0.57 | 40.0 | 4.49e-01 | 98.5% | 95.1% |
| 4275741 | 304.110.1.4 ↗ | a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › UPF0176_N | 0.56 | 35.0 | 4.14e-01 | 75.9% | 94.4% |
| 3585079 | 304.24.1.1 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C | 0.56 | 51.0 | 4.41e-01 | 97.1% | 96.1% |
| 4476425 | 304.41.1.1 ↗ | a+b two layers › Alpha-beta plaits › Glutamyl tRNA-reductase catalytic, N-terminal domain › Glutamyl tRNA-reductase catalytic, N-terminal domain › GlutR_N | 0.52 | 42.0 | 4.20e-01 | 87.6% | 91.7% |
| 3989046 | 862.1.1.8 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › AEP-TOTE | 0.51 | 45.0 | 3.85e-01 | 99.3% | 89.8% |
| 4029853 | 2003.1.5.6 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltr_RsmB-F | 0.51 | 40.0 | 2.85e-01 | 85.4% | 76.3% |
D3
medium
residues 1-14_73-88_280-392
Domain cluster:
representative
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF22042.3 best | EF-G_D2 | 90.8 | 6.80e-26 | 61.5% | 97.6% |
| PF03144.32 | GTP_EFTU_D2 | 38.8 | 1.40e-09 | 47.5% | 98.6% |
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2h5eA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.90 | 84.0 | 7.94e-01 | 96.5% | 100.0% |
| 2bm0A02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.84 | 58.0 | 6.80e-01 | 70.6% | 98.1% |
| 4zciA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.83 | 57.0 | 6.81e-01 | 77.6% | 100.0% |
| 5h7jA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.77 | 57.0 | 6.49e-01 | 84.6% | 100.0% |
| 2hcjB02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.77 | 50.0 | 6.09e-01 | 92.3% | 100.0% |
| 1vx4404 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.74 | 66.0 | 6.72e-01 | 93.0% | 98.6% |
| 3p26B02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.73 | 51.0 | 6.01e-01 | 95.1% | 100.0% |
| 3mcaA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.70 | 51.0 | 5.59e-01 | 94.4% | 90.7% |
| 1kk1A02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.66 | 49.0 | 5.56e-01 | 93.0% | 100.0% |
| 3hurA01 | 2.40.37.10 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 | 0.55 | 39.0 | 3.78e-01 | 73.4% | 91.3% |
| 2zuvA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 32.0 | 3.62e-01 | 92.3% | 76.4% |
| 3co8A01 | 2.40.37.10 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 | 0.54 | 41.0 | 4.08e-01 | 87.4% | 77.0% |
| 2ok7A01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.52 | 38.0 | 4.23e-01 | 93.7% | 97.3% |
| 1ddgA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.52 | 38.0 | 4.23e-01 | 92.3% | 96.5% |
ECOD (92)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4278036 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.99 | 82.0 | 8.82e-01 | 99.3% | 96.8% |
| 4448712 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.94 | 79.0 | 8.45e-01 | 100.0% | 97.6% |
| 4301121 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.87 | 66.0 | 7.34e-01 | 77.6% | 100.0% |
| 4932628 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.87 | 67.0 | 7.16e-01 | 79.0% | 98.4% |
| 4356490 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.87 | 66.0 | 7.32e-01 | 77.6% | 100.0% |
| 4391336 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.87 | 65.0 | 7.39e-01 | 77.6% | 100.0% |
| 4037780 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.87 | 65.0 | 6.36e-01 | 77.6% | 99.4% |
| 3433942 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.86 | 66.0 | 7.32e-01 | 77.6% | 100.0% |
| 4559415 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.86 | 82.0 | 5.54e-01 | 100.0% | 97.4% |
| 3719694 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.86 | 65.0 | 6.73e-01 | 77.6% | 98.5% |
| 4322679 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.86 | 64.0 | 6.59e-01 | 76.2% | 100.0% |
| 3596330 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.86 | 64.0 | 6.71e-01 | 76.2% | 100.0% |
| 3605594 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.86 | 63.0 | 6.64e-01 | 75.5% | 100.0% |
| 3253743 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.86 | 64.0 | 6.87e-01 | 76.9% | 99.2% |
| 4425983 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.85 | 59.0 | 7.02e-01 | 78.3% | 100.0% |
| 3611004 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.85 | 62.0 | 6.44e-01 | 74.8% | 99.3% |
| 2987715 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.85 | 67.0 | 7.45e-01 | 90.9% | 100.0% |
| 3244784 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.85 | 60.0 | 6.44e-01 | 72.0% | 100.0% |
| 4308556 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.85 | 57.0 | 6.78e-01 | 71.3% | 97.0% |
| 4563889 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.84 | 64.0 | 6.96e-01 | 77.6% | 99.2% |
| 4995921 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.84 | 63.0 | 6.43e-01 | 76.9% | 100.0% |
| 4625222 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.84 | 59.0 | 6.76e-01 | 72.0% | 100.0% |
| 4165709 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.84 | 60.0 | 7.02e-01 | 79.0% | 100.0% |
| 4029670 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.83 | 64.0 | 6.81e-01 | 78.3% | 100.0% |
| 4526935 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.83 | 63.0 | 6.07e-01 | 78.3% | 99.4% |
| 4948259 | 2004.1.1.14 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GTP_EFTU | 0.83 | 71.0 | 5.25e-01 | 89.5% | 99.4% |
| 4012780 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.83 | 63.0 | 6.51e-01 | 78.3% | 100.0% |
| 3955900 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.83 | 63.0 | 6.53e-01 | 79.0% | 99.3% |
| 3970821 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.83 | 59.0 | 6.90e-01 | 90.2% | 100.0% |
| 4084726 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.82 | 57.0 | 6.62e-01 | 70.6% | 100.0% |
| 3989019 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.82 | 57.0 | 6.55e-01 | 93.0% | 92.7% |
| 4352697 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.82 | 54.0 | 6.51e-01 | 91.6% | 100.0% |
| 3366414 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.82 | 60.0 | 6.64e-01 | 95.1% | 93.0% |
| 4340723 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.82 | 66.0 | 7.24e-01 | 92.3% | 100.0% |
| 3256745 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.81 | 58.0 | 6.80e-01 | 79.0% | 100.0% |
| 3933370 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.81 | 62.0 | 6.27e-01 | 78.3% | 99.3% |
| 4278212 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.81 | 66.0 | 6.99e-01 | 93.7% | 93.8% |
| 3648086 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.81 | 67.0 | 7.04e-01 | 96.5% | 94.6% |
| 4118889 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.81 | 67.0 | 7.03e-01 | 86.0% | 96.2% |
| 4186355 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.80 | 65.0 | 7.08e-01 | 93.0% | 100.0% |
| 4518161 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.80 | 57.0 | 6.63e-01 | 88.8% | 100.0% |
| 3708577 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.79 | 61.0 | 6.09e-01 | 79.0% | 98.6% |
| 3556029 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.79 | 60.0 | 6.36e-01 | 78.3% | 99.2% |
| 3326611 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.79 | 59.0 | 6.74e-01 | 90.9% | 100.0% |
| 4027428 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.79 | 58.0 | 6.35e-01 | 75.5% | 100.0% |
| 3711279 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.79 | 49.0 | 6.16e-01 | 88.8% | 100.0% |
| 3419484 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.79 | 57.0 | 6.59e-01 | 78.3% | 100.0% |
| 4134860 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.79 | 66.0 | 6.67e-01 | 86.7% | 97.9% |
| 4665981 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.79 | 56.0 | 6.54e-01 | 88.1% | 100.0% |
| 4146985 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.78 | 57.0 | 6.51e-01 | 79.0% | 97.3% |
| 4551207 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.78 | 58.0 | 6.56e-01 | 90.9% | 99.1% |
| 4665951 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.78 | 66.0 | 7.01e-01 | 92.3% | 100.0% |
| 3744838 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.78 | 55.0 | 6.45e-01 | 72.7% | 99.0% |
| 4539652 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.78 | 52.0 | 6.25e-01 | 92.3% | 98.0% |
| 3502344 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.78 | 51.0 | 6.21e-01 | 91.6% | 100.0% |
| 4982772 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.78 | 64.0 | 6.59e-01 | 85.3% | 95.6% |
| 3609428 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.77 | 57.0 | 5.85e-01 | 75.5% | 100.0% |
| 4397998 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.77 | 59.0 | 6.10e-01 | 79.0% | 97.8% |
| 3194678 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.77 | 50.0 | 5.86e-01 | 88.1% | 90.5% |
| 3719743 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.77 | 57.0 | 6.54e-01 | 79.0% | 100.0% |
| 4056457 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.77 | 64.0 | 6.88e-01 | 92.3% | 100.0% |
| 3700677 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.77 | 52.0 | 6.05e-01 | 90.2% | 94.3% |
| 4943444 | 1.1.7.145 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EFG_III | 0.77 | 64.0 | 6.75e-01 | 87.4% | 96.9% |
| 3605852 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.76 | 50.0 | 6.07e-01 | 89.5% | 100.0% |
| 3719677 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.76 | 57.0 | 5.53e-01 | 76.9% | 100.0% |
| 3520204 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.76 | 52.0 | 6.05e-01 | 86.0% | 95.2% |
| 5058835 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.76 | 64.0 | 6.80e-01 | 92.3% | 100.0% |
| 3615013 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.76 | 57.0 | 6.31e-01 | 95.8% | 95.7% |
| 3734536 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.76 | 51.0 | 5.91e-01 | 95.1% | 93.3% |
| 4946081 | 1.1.7.145 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EFG_III | 0.75 | 65.0 | 6.86e-01 | 93.0% | 99.2% |
| 4205494 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.75 | 59.0 | 6.39e-01 | 86.7% | 95.8% |
| 4600912 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.75 | 64.0 | 6.78e-01 | 93.0% | 98.5% |
| 4110344 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.75 | 67.0 | 6.47e-01 | 92.3% | 100.0% |
| 3901262 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.75 | 66.0 | 5.40e-01 | 93.0% | 100.0% |
| 5047262 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.74 | 62.0 | 6.68e-01 | 91.6% | 100.0% |
| 3737206 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.74 | 50.0 | 5.76e-01 | 90.9% | 92.4% |
| 3407711 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.74 | 50.0 | 6.00e-01 | 91.6% | 99.0% |
| 3701337 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.74 | 66.0 | 6.83e-01 | 93.0% | 99.3% |
| 4980160 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.74 | 50.0 | 5.99e-01 | 92.3% | 99.0% |
| 5048764 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.74 | 66.0 | 6.68e-01 | 93.0% | 98.6% |
| 3596672 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.74 | 65.0 | 6.50e-01 | 92.3% | 100.0% |
| 3594451 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.73 | 65.0 | 6.54e-01 | 93.0% | 98.6% |
| 4949488 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.73 | 50.0 | 5.98e-01 | 88.8% | 100.0% |
| 3186654 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.73 | 65.0 | 6.20e-01 | 92.3% | 100.0% |
| 3426918 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.73 | 53.0 | 5.90e-01 | 94.4% | 93.0% |
| 4266757 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.73 | 69.0 | 6.66e-01 | 100.0% | 98.1% |
| 3498204 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.73 | 50.0 | 5.93e-01 | 91.6% | 100.0% |
| 3628582 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.72 | 49.0 | 5.49e-01 | 88.8% | 87.0% |
| 3501569 | 1.1.7.50 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 | 0.71 | 60.0 | 6.37e-01 | 92.3% | 100.0% |
| 4666983 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.70 | 67.0 | 6.62e-01 | 100.0% | 98.0% |
| 3221126 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.69 | 50.0 | 5.43e-01 | 95.1% | 87.5% |
| 3615156 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.68 | 50.0 | 5.60e-01 | 93.7% | 93.9% |
D4
medium
residues 189-240
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2b9dA01 | 3.30.160.330 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.63 | 33.0 | 3.65e-01 | 90.4% | 59.0% |
| 4iwxA03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.59 | 46.0 | 3.80e-01 | 100.0% | 44.1% |
| 3sm4A00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.56 | 48.0 | 3.19e-01 | 100.0% | 45.8% |
| 8es5A01 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 46.0 | 3.38e-01 | 100.0% | 80.4% |
| 1dpgA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.52 | 43.0 | 2.69e-01 | 94.2% | 90.3% |
| 2qkbA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.50 | 39.0 | 2.95e-01 | 92.3% | 56.6% |
| 7uclA01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.50 | 41.0 | 3.38e-01 | 94.2% | 98.0% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3740226 | 5051.1.1.7 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Nramp | 0.64 | 54.0 | 3.19e-01 | 100.0% | 64.8% |
| 3610776 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.60 | 44.0 | 2.86e-01 | 82.7% | 55.4% |
| 4931277 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.60 | 44.0 | 3.11e-01 | 100.0% | 26.5% |
| 3238136 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.59 | 43.0 | 2.65e-01 | 100.0% | 12.2% |
| 3934802 | 216.1.1.20 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like | 0.59 | 51.0 | 4.23e-01 | 100.0% | 62.1% |
| 3331262 | 216.1.1.20 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like | 0.59 | 50.0 | 4.09e-01 | 94.2% | 76.8% |
| 4954852 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.58 | 41.0 | 2.86e-01 | 100.0% | 22.5% |
| 3248749 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.56 | 49.0 | 3.90e-01 | 100.0% | 55.5% |
| None | — | 0.56 | 48.0 | 4.15e-01 | 100.0% | 67.1% | |
| 5073431 | 1075.1.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain | 0.56 | 48.0 | 2.79e-01 | 100.0% | 24.2% |
| 4028705 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.56 | 48.0 | 3.76e-01 | 100.0% | 50.8% |
| 3236416 | 5001.1.1.41 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw | 0.56 | 50.0 | 2.99e-01 | 100.0% | 17.2% |
| 3237013 | 101.1.2.4 ↗ | alpha arrays › HTH › HTH › winged helix domain › Forkhead | 0.56 | 41.0 | 3.05e-01 | 78.8% | 65.4% |
| 3401010 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 40.0 | 3.27e-01 | 86.5% | 79.1% |
| 3265334 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.54 | 45.0 | 3.66e-01 | 100.0% | 81.8% |
| 4988512 | 101.1.2.14 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_5 | 0.53 | 37.0 | 2.62e-01 | 100.0% | 21.9% |
| 5056521 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.53 | 44.0 | 3.46e-01 | 92.3% | 82.7% |
| 3212167 | 5001.1.1.41 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw | 0.53 | 46.0 | 2.80e-01 | 100.0% | 20.9% |
| 3415735 | 216.1.1.20 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like | 0.52 | 45.0 | 3.75e-01 | 100.0% | 82.1% |
| 3711291 | 375.10.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha | 0.52 | 31.0 | 3.05e-01 | 92.3% | 50.0% |
| 3599268 | 2485.1.1.51 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_14 | 0.51 | 45.0 | 2.88e-01 | 100.0% | 43.5% |
| 3704645 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.51 | 40.0 | 3.55e-01 | 100.0% | 86.7% |
| 4183868 | 878.1.1.1 ↗ | a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 | 0.50 | 44.0 | 3.88e-01 | 100.0% | 79.7% |
| 3224158 | 245.1.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 | 0.50 | 42.0 | 3.67e-01 | 100.0% | 90.6% |