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CAKLQF020000022.1__CAH1091340.1__SAMEA5780031_03332__00087

Bact-Vir

CAKLQF020000022.1__CAH1091340.1__SAMEA5780031_03332__00087

Identity

Kingdom:
phage

Quality

93.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-116
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00164.32 best Ribosom_S12_S23 125.7 9.20e-37 100.0% 86.4%
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2vqeL00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.99 97.0 8.49e-01 100.0% 75.0%
3o2zP00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.86 76.0 6.95e-01 93.5% 86.2%
2rcnA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.85 53.0 6.50e-01 83.7% 96.7%
2wg5F02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.80 50.0 6.17e-01 81.5% 100.0%
7k98B01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.71 58.0 5.40e-01 87.0% 78.9%
1gd7A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.71 60.0 5.71e-01 93.5% 77.1%
4gs3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.71 55.0 5.62e-01 83.7% 95.6%
1a0iA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 55.0 5.35e-01 82.6% 99.0%
5l37C00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.69 54.0 5.56e-01 81.5% 90.7%
4egvA02 2.40.50.840 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.69 52.0 5.73e-01 84.8% 97.3%
5aj3Q00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 57.0 5.34e-01 87.0% 73.4%
8aa9A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 55.0 5.15e-01 87.0% 86.8%
6jy5B00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.68 53.0 5.56e-01 81.5% 93.9%
3u4vA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 54.0 5.05e-01 85.9% 81.0%
2rhsD02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 54.0 5.14e-01 84.8% 80.6%
5odnC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.67 54.0 5.21e-01 84.8% 92.2%
1ue6D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 55.0 5.33e-01 90.2% 98.1%
4me3A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 53.0 5.22e-01 85.9% 93.8%
3tssA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 48.0 5.43e-01 78.3% 100.0%
2cqaA01 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.64 48.0 5.22e-01 83.7% 97.3%
2pi2D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 51.0 4.61e-01 87.0% 71.5%
4b08A01 2.40.50.730 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 49.0 5.19e-01 84.8% 95.1%
2vnuD02 2.40.50.700 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 46.0 4.97e-01 83.7% 94.8%
1b44D00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 48.0 4.58e-01 83.7% 82.1%
1xjvA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 54.0 4.70e-01 100.0% 76.8%
1ae2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 46.0 4.78e-01 81.5% 100.0%
1gd5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.60 44.0 3.96e-01 77.2% 96.9%
1h6hA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.59 41.0 3.61e-01 72.8% 89.5%
2l73A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.59 42.0 3.63e-01 73.9% 88.1%
3qwnD01 2.40.50.500 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain 0.58 41.0 4.50e-01 82.6% 95.7%
2k5wA00 2.40.50.480 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Protein of unknown function DUF1093 0.58 45.0 4.28e-01 84.8% 75.7%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 31.0 3.41e-01 90.2% 61.8%
6we5A00 3.90.80.10 Alpha Beta › Alpha-Beta Complex › Inorganic Pyrophosphatase › Inorganic pyrophosphatase 0.54 48.0 3.74e-01 100.0% 62.6%
3oe3C00 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.53 34.0 3.48e-01 90.2% 65.9%
3qexA06 3.40.1820.10 Alpha Beta › 3-Layer(aba) Sandwich › Ribonuclease H-like motif › DnaQ-like 3'-5' exonuclease 0.51 43.0 4.36e-01 97.8% 92.4%
1f9cA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 40.0 3.68e-01 85.9% 73.0%
ECOD (81)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4416106 2.1.1.1 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.99 97.0 8.27e-01 100.0% 68.7%
4012257 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.99 97.0 8.82e-01 100.0% 80.7%
1000222 2.1.1.1 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.99 93.0 9.36e-01 96.7% 96.7%
1549576 2.1.1.1 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.96 93.0 7.86e-01 100.0% 77.4%
3598854 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.88 79.0 6.67e-01 93.5% 68.6%
5028505 2.1.1.1 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.88 78.0 6.65e-01 93.5% 69.3%
2579126 2.1.1.1 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.88 78.0 6.57e-01 93.5% 67.4%
4882592 2.1.1.1 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.88 77.0 6.47e-01 92.4% 65.8%
5001168 2.1.1.1 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.88 77.0 7.50e-01 92.4% 96.0%
3197575 2.1.1.1 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.85 62.0 6.30e-01 75.0% 83.3%
4599318 2.1.1.299 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S12 0.84 67.0 7.22e-01 84.8% 96.2%
4353586 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.82 57.0 5.52e-01 84.8% 65.0%
4581600 2.1.1.70 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C 0.81 52.0 4.30e-01 83.7% 40.0%
4583050 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.81 54.0 6.14e-01 85.9% 90.0%
3603885 2.1.1.70 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C 0.80 52.0 4.28e-01 83.7% 40.0%
3282644 2.24.1.2 beta barrels › OB-fold › probable receptor YhhM › probable receptor YhhM › DUF7489 0.80 53.0 6.21e-01 83.7% 95.4%
3969377 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.79 55.0 6.10e-01 84.8% 89.2%
4114715 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.78 55.0 5.29e-01 84.8% 63.8%
3602009 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.78 49.0 4.28e-01 81.5% 44.6%
2759388 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.76 53.0 6.04e-01 83.7% 93.0%
3791987 2.1.1.25 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_pol_B_exo1 0.74 60.0 5.55e-01 87.0% 89.6%
4001702 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.74 60.0 5.53e-01 87.0% 87.8%
4250680 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.72 51.0 5.55e-01 81.5% 89.3%
4024475 2.1.1.4 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 0.72 58.0 6.27e-01 84.8% 100.0%
143390 2.24.1.1 beta barrels › OB-fold › probable receptor YhhM › probable receptor YhhM › DUF2500 0.72 52.0 5.70e-01 83.7% 92.1%
3274510 2.1.1.18 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.72 51.0 5.55e-01 82.6% 89.3%
4273244 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 57.0 6.10e-01 84.8% 100.0%
4505995 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 49.0 5.64e-01 79.3% 100.0%
3480547 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 57.0 5.28e-01 87.0% 89.8%
3489010 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 59.0 5.21e-01 87.0% 68.8%
3508573 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 54.0 5.21e-01 83.7% 71.4%
4131660 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.70 54.0 5.75e-01 85.9% 92.5%
3226147 2.1.1.44 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.70 54.0 5.65e-01 84.8% 88.2%
3944434 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 56.0 5.53e-01 84.8% 100.0%
3314558 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.69 56.0 4.78e-01 87.0% 68.1%
4956351 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 55.0 3.48e-01 87.0% 20.6%
2507076 2.16.1.1 beta barrels › OB-fold › EutN/CcmL-like › EutN/CcmL-like › EutN_CcmL 0.68 53.0 5.58e-01 81.5% 93.9%
426155 2.24.1.1 beta barrels › OB-fold › probable receptor YhhM › probable receptor YhhM › DUF2500 0.68 49.0 5.44e-01 83.7% 97.2%
3775920 2.1.1.44 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.68 55.0 4.93e-01 85.9% 65.6%
3991931 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.68 55.0 5.06e-01 87.0% 82.5%
3444970 2.1.1.223 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF28721 0.68 53.0 4.75e-01 83.7% 67.7%
3402269 2.1.1.4 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 0.68 54.0 5.09e-01 83.7% 70.0%
5010892 2.1.1.17 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.68 53.0 5.09e-01 84.8% 72.4%
4982481 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 55.0 5.47e-01 85.9% 95.8%
3876051 2.1.1.44 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.68 55.0 5.68e-01 85.9% 92.9%
5047864 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.68 53.0 4.83e-01 82.6% 99.2%
5076488 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 54.0 5.28e-01 85.9% 95.0%
3172156 2.1.1.44 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.68 55.0 5.24e-01 85.9% 84.8%
4331293 2.1.1.16 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_bind 0.67 61.0 5.44e-01 97.8% 81.6%
4984379 2.1.1.17 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.67 52.0 5.66e-01 82.6% 100.0%
3214896 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 51.0 4.85e-01 85.9% 68.2%
4978710 2.1.1.17 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.67 53.0 5.52e-01 84.8% 97.6%
3882652 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 53.0 4.77e-01 87.0% 80.8%
4977723 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.66 55.0 4.75e-01 87.0% 91.1%
4321476 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 51.0 5.31e-01 84.8% 88.2%
3669779 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.66 45.0 3.91e-01 70.7% 96.4%
4935709 2.1.1.17 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.66 52.0 5.03e-01 84.8% 81.0%
2389667 2.1.1.70 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Prot_ATP_ID_OB_C 0.66 47.0 4.72e-01 82.6% 73.4%
5046188 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 49.0 5.41e-01 83.7% 97.3%
3589263 2.1.1.222 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_YrrC 0.65 51.0 5.47e-01 83.7% 97.5%
3496824 2.1.1.43 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_3 0.65 51.0 5.01e-01 87.0% 77.0%
3670182 2.1.1.1 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.65 61.0 5.39e-01 98.9% 72.8%
5067186 2.1.1.17 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.65 53.0 5.27e-01 88.0% 87.4%
3959123 2.1.1.17 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.65 51.0 4.87e-01 83.7% 82.9%
4594372 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 48.0 4.89e-01 85.9% 80.0%
3250428 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 49.0 4.19e-01 80.4% 55.9%
5044484 2.1.1.17 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.64 50.0 5.06e-01 85.9% 82.8%
4285152 1.1.7.2 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L3 0.64 44.0 3.33e-01 70.7% 99.1%
4998126 2.1.1.17 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.64 51.0 5.29e-01 84.8% 95.3%
2772098 2.1.1.77 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RNA_pol_RpbG 0.62 49.0 4.48e-01 84.8% 99.2%
5015437 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.62 50.0 4.42e-01 87.0% 74.1%
3855663 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.62 44.0 3.93e-01 73.9% 97.7%
3266685 2484.1.1.34 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.61 50.0 2.83e-01 89.1% 37.1%
3907754 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 48.0 4.95e-01 82.6% 100.0%
3279764 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 44.0 4.90e-01 94.6% 100.0%
3252847 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 50.0 5.22e-01 98.9% 97.6%
3968675 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 46.0 4.10e-01 94.6% 60.0%
3632377 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 46.0 4.63e-01 87.0% 93.7%
4958552 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 47.0 4.37e-01 88.0% 95.7%
4957055 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.52 36.0 3.92e-01 78.3% 88.0%
3481723 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.51 38.0 3.56e-01 78.3% 63.5%