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CAKLQF020000023.1__CAH1091737.1__SAMEA5780031_03389__00055
Bact-VirCAKLQF020000023.1__CAH1091737.1__SAMEA5780031_03389__00055
Identity
- Kingdom:
- phage
Quality
85.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-122
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xomA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.73 | 34.0 | 3.13e-01 | 98.2% | 33.8% |
| 1unnC00 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.65 | 34.0 | 3.41e-01 | 98.2% | 48.6% |
| 4kncA02 | 2.60.120.1380 | Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module | 0.63 | 33.0 | 3.24e-01 | 98.2% | 46.2% |
| 6cy5A01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.61 | 40.0 | 4.42e-01 | 98.2% | 84.3% |
| 4omfA00 | 1.10.645.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B | 0.60 | 54.0 | 3.72e-01 | 100.0% | 83.1% |
| 3a21A03 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.60 | 30.0 | 3.15e-01 | 98.2% | 49.5% |
| 1hu3A00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.59 | 32.0 | 2.63e-01 | 89.2% | 28.4% |
| 4u7cB04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.58 | 33.0 | 3.37e-01 | 98.2% | 56.0% |
| 3r5dA01 | 3.30.70.2010 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 51.0 | 4.84e-01 | 99.1% | 82.2% |
| 3mfiA04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.57 | 34.0 | 3.35e-01 | 98.2% | 53.8% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.54 | 29.0 | 3.35e-01 | 96.4% | 72.4% |
| 1h8lA01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.53 | 36.0 | 2.73e-01 | 70.3% | 78.4% |
| 2c2uA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.52 | 43.0 | 3.69e-01 | 89.2% | 78.1% |
| 3bt5A00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.51 | 42.0 | 3.87e-01 | 91.0% | 93.4% |
| 3hrdB02 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.51 | 35.0 | 3.22e-01 | 72.1% | 73.2% |
| 1konA02 | 3.30.70.980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain | 0.50 | 36.0 | 3.92e-01 | 89.2% | 93.3% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3285401 | 3986.2.1.0 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd | 0.62 | 33.0 | 4.00e-01 | 99.1% | 77.3% |
| 4033537 | 1119.1.1.1 ↗ | a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW | 0.62 | 32.0 | 2.53e-01 | 98.2% | 23.0% |
| 4257906 | 103.2.1.2 ↗ | alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone | 0.61 | 37.0 | 4.04e-01 | 86.5% | 73.3% |
| 1548444 | 2002.1.1.56 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Dus | 0.60 | 39.0 | 2.81e-01 | 76.6% | 23.4% |
| 223884 | 3610.1.1.2 ↗ | a+b complex topology › Tetrahydrodipicolinate N-succinyletransferase N-terminal domain › Tetrahydrodipicolinate N-succinyletransferase N-terminal domain › Tetrahydrodipicolinate N-succinyletransferase N-terminal domain › THDPS_M,THDPS_N | 0.58 | 50.0 | 4.39e-01 | 99.1% | 63.1% |
| 3216210 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.57 | 27.0 | 3.68e-01 | 97.3% | 94.0% |
| 4589 | 109.4.1.32 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › MIF4G | 0.56 | 33.0 | 3.49e-01 | 87.4% | 65.3% |
| 4969863 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.55 | 29.0 | 3.39e-01 | 96.4% | 73.3% |
| 4945042 | 180.1.1.1 ↗ | alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 | 0.54 | 42.0 | 3.56e-01 | 82.9% | 71.9% |
| 4967222 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.54 | 29.0 | 3.60e-01 | 97.3% | 91.7% |
| 5067865 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.54 | 29.0 | 3.41e-01 | 96.4% | 78.6% |
| 3734833 | 304.14.1.0 ↗ | a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) | 0.53 | 38.0 | 4.19e-01 | 98.2% | 94.4% |
| 5012895 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.52 | 26.0 | 3.40e-01 | 98.2% | 90.9% |
| 3329759 | 109.4.1.1267 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, E_motif | 0.52 | 35.0 | 2.12e-01 | 85.6% | 10.8% |
| 5065436 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.52 | 27.0 | 3.30e-01 | 96.4% | 82.8% |
| 5015713 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.51 | 28.0 | 3.46e-01 | 98.2% | 93.3% |
| 3489921 | 5054.1.1.2 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans | 0.51 | 39.0 | 2.90e-01 | 81.1% | 43.1% |
| 4939739 | 3115.1.1.1 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A | 0.51 | 27.0 | 3.36e-01 | 96.4% | 93.2% |
D2
medium
residues 162-207_319-449
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3aljA02 | 3.30.9.10 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 | 0.56 | 37.0 | 3.99e-01 | 94.4% | 76.3% |
| 7pjcA02 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.52 | 31.0 | 3.61e-01 | 94.9% | 80.6% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3057485 | 71.1.1.10 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_3 | 0.64 | 27.0 | 2.89e-01 | 92.1% | 43.5% |
| 3208760 | 244.3.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU | 0.56 | 26.0 | 3.36e-01 | 88.1% | 76.8% |
| 3738140 | 3692.1.1.1 ↗ | a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › OCD_Mu_crystall | 0.53 | 28.0 | 3.28e-01 | 85.3% | 70.0% |
D3
medium
residues 208-318_450-460
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4uoiC00 | 3.30.160.890 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Hepatitis C virus envelope glycoprotein E1, chain C | 0.54 | 25.0 | 3.55e-01 | 91.0% | 100.0% |
| 1p5dX04 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.54 | 28.0 | 3.14e-01 | 88.5% | 63.4% |
| 2f7lA04 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.54 | 27.0 | 3.19e-01 | 86.9% | 68.2% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4978863 | 331.2.1.1 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV | 0.56 | 27.0 | 3.04e-01 | 89.3% | 55.8% |
| 4952140 | 331.2.1.1 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV | 0.54 | 27.0 | 3.21e-01 | 86.9% | 70.0% |
| 4939738 | 331.2.1.1 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV | 0.52 | 27.0 | 3.11e-01 | 87.7% | 67.1% |
| 4444537 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.50 | 28.0 | 3.01e-01 | 91.8% | 59.6% |