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CAKLQF020000026.1__CAH1092453.1__SAMEA5780031_03552__00034
Bact-VirCAKLQF020000026.1__CAH1092453.1__SAMEA5780031_03552__00034
Identity
- Kingdom:
- phage
Quality
90.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 208-520
Domain cluster:
rep: IMGVR_UViG_3300010239_000028-3300010239-Ga0136451_1000008938__D83-314
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01964.25 best | ThiC_Rad_SAM | 510.2 | 5.50e-153 | 100.0% | 75.3% |
CATH (82)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3epnB01 | 3.20.20.540 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Radical SAM ThiC family, central domain | 1.00 | 92.0 | 9.39e-01 | 94.9% | 95.4% |
| 3ktsA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.83 | 49.0 | 6.39e-01 | 93.9% | 99.5% |
| 4mwaA00 | 3.20.20.20 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like | 0.82 | 63.0 | 6.97e-01 | 97.4% | 94.2% |
| 1mzhA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.78 | 54.0 | 6.41e-01 | 94.9% | 98.2% |
| 1twdA00 | 3.20.20.380 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Copper homeostasis (CutC) domain | 0.78 | 57.0 | 6.62e-01 | 93.9% | 100.0% |
| 3cyjA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.77 | 54.0 | 6.14e-01 | 94.9% | 92.4% |
| 3bofA02 | 3.20.20.20 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like | 0.77 | 61.0 | 6.73e-01 | 100.0% | 98.1% |
| 1sfjB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.77 | 57.0 | 6.53e-01 | 93.9% | 100.0% |
| 4exbB00 | 3.20.20.100 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain | 0.77 | 58.0 | 6.45e-01 | 95.2% | 95.3% |
| 3ijlA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.76 | 52.0 | 6.06e-01 | 95.5% | 93.4% |
| 3qw3A01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.76 | 59.0 | 6.64e-01 | 100.0% | 100.0% |
| 3nl6B01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.76 | 54.0 | 6.34e-01 | 98.1% | 100.0% |
| 1vr6A02 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.76 | 59.0 | 6.42e-01 | 97.8% | 92.9% |
| 3nntA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.76 | 61.0 | 6.73e-01 | 99.4% | 100.0% |
| 3kp1A01 | 3.20.20.440 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › D-Lysine 5,6-aminomutase alpha subunit | 0.76 | 72.0 | 6.48e-01 | 99.0% | 81.8% |
| 1ccwB01 | 3.20.20.240 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Methylmalonyl-CoA mutase | 0.75 | 72.0 | 6.47e-01 | 100.0% | 77.5% |
| 1jpdX02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.75 | 50.0 | 6.07e-01 | 93.9% | 100.0% |
| 1xrsA00 | 3.20.20.440 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › D-Lysine 5,6-aminomutase alpha subunit | 0.75 | 71.0 | 5.87e-01 | 100.0% | 59.9% |
| 3tfxA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.75 | 54.0 | 6.26e-01 | 94.6% | 99.1% |
| 1e1cA01 | 3.20.20.240 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Methylmalonyl-CoA mutase | 0.74 | 69.0 | 5.67e-01 | 96.2% | 62.8% |
| 2zadA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.74 | 52.0 | 6.04e-01 | 95.2% | 96.1% |
| 4r27B00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.74 | 67.0 | 6.11e-01 | 94.9% | 99.8% |
| 5tcgA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.74 | 58.0 | 6.45e-01 | 99.0% | 99.6% |
| 1x7fA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.74 | 53.0 | 6.23e-01 | 94.2% | 100.0% |
| 3ik4A02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.74 | 52.0 | 5.91e-01 | 95.2% | 92.5% |
| 3rr1B02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.74 | 53.0 | 6.11e-01 | 95.2% | 96.6% |
| 5k9xA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.73 | 59.0 | 6.49e-01 | 99.7% | 100.0% |
| 1jcjA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.72 | 55.0 | 6.08e-01 | 91.7% | 95.2% |
| 1n7kA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.72 | 48.0 | 5.54e-01 | 92.3% | 88.5% |
| 4hpnA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.72 | 53.0 | 5.82e-01 | 95.2% | 89.0% |
| 5kinC00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.72 | 57.0 | 6.29e-01 | 99.0% | 100.0% |
| 5vanA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.72 | 65.0 | 5.86e-01 | 95.2% | 97.9% |
| 4n6fA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.71 | 53.0 | 5.99e-01 | 97.1% | 97.1% |
| 1a5aA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.71 | 57.0 | 6.29e-01 | 99.0% | 100.0% |
| 2ekcB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.71 | 51.0 | 5.61e-01 | 97.1% | 87.5% |
| 3cawA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.71 | 48.0 | 5.61e-01 | 92.3% | 93.8% |
| 3oa3A00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.71 | 48.0 | 5.28e-01 | 92.7% | 82.6% |
| 2j62A02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.71 | 60.0 | 6.07e-01 | 94.6% | 87.7% |
| 7xg9A01 | 3.20.20.220 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › | 0.70 | 60.0 | 6.28e-01 | 93.3% | 96.8% |
| 3p6lA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.70 | 57.0 | 6.19e-01 | 97.1% | 100.0% |
| 2eplX02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.69 | 63.0 | 6.40e-01 | 94.6% | 99.7% |
| 6gs8A01 | 3.20.20.100 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain | 0.69 | 57.0 | 5.83e-01 | 94.6% | 87.9% |
| 2qq6A02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.69 | 55.0 | 5.97e-01 | 95.2% | 95.9% |
| 1rh9A00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.69 | 65.0 | 6.14e-01 | 100.0% | 100.0% |
| 3v75A01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.69 | 58.0 | 6.22e-01 | 99.7% | 100.0% |
| 3vylA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.68 | 60.0 | 6.21e-01 | 96.8% | 97.0% |
| 2g0wB00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.68 | 58.0 | 6.12e-01 | 100.0% | 97.9% |
| 1m53A01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.68 | 62.0 | 5.66e-01 | 96.8% | 98.5% |
| 1cecA00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.67 | 61.0 | 6.01e-01 | 95.2% | 100.0% |
| 2oqhA02 | 3.20.20.120 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain | 0.67 | 45.0 | 5.08e-01 | 90.4% | 86.2% |
| 4ovxA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.67 | 55.0 | 5.95e-01 | 94.9% | 100.0% |
| 2yl8A01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.66 | 60.0 | 5.70e-01 | 95.2% | 99.7% |
| 3ii1A02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.66 | 59.0 | 5.41e-01 | 93.9% | 99.0% |
| 1f8iA00 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.66 | 60.0 | 5.30e-01 | 93.9% | 78.7% |
| 2y2wC02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.66 | 60.0 | 5.68e-01 | 95.8% | 100.0% |
| 2x7vA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.66 | 57.0 | 6.02e-01 | 94.6% | 100.0% |
| 2ya0A02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.65 | 62.0 | 5.26e-01 | 99.4% | 95.9% |
| 5e9fD01 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.65 | 59.0 | 5.34e-01 | 93.9% | 80.3% |
| 3rcnA02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.65 | 59.0 | 5.74e-01 | 94.2% | 100.0% |
| 5ot1A02 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.64 | 60.0 | 5.72e-01 | 97.1% | 98.6% |
| 6y9tB01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.64 | 60.0 | 5.54e-01 | 100.0% | 99.2% |
| 2aqwA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.63 | 60.0 | 6.01e-01 | 99.7% | 100.0% |
| 1rhcA00 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.63 | 57.0 | 5.65e-01 | 94.6% | 100.0% |
| 1e43A01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.62 | 56.0 | 5.80e-01 | 94.6% | 100.0% |
| 2o3aA00 | 3.40.1280.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain | 0.62 | 29.0 | 3.98e-01 | 91.4% | 84.5% |
| 3rf9B02 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.62 | 46.0 | 4.85e-01 | 85.3% | 83.6% |
| 5l3qA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 38.0 | 4.63e-01 | 98.4% | 94.7% |
| 3wg9A02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.59 | 25.0 | 3.73e-01 | 94.9% | 87.9% |
| 1ipaA02 | 3.40.1280.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain | 0.59 | 30.0 | 4.28e-01 | 94.9% | 100.0% |
| 5v1qB01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.58 | 50.0 | 5.22e-01 | 89.1% | 98.3% |
| 6eztA03 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.56 | 52.0 | 4.86e-01 | 97.1% | 80.8% |
| 2vzoA03 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.56 | 52.0 | 5.11e-01 | 98.1% | 100.0% |
| 4impA02 | 3.40.50.11460 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.55 | 34.0 | 4.14e-01 | 83.7% | 90.5% |
| 3gqvA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 31.0 | 3.90e-01 | 86.9% | 88.4% |
| 2vptA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.55 | 35.0 | 4.24e-01 | 95.8% | 96.0% |
| 1tjyA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 26.0 | 3.55e-01 | 86.3% | 87.7% |
| 4cujA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 25.0 | 3.67e-01 | 99.0% | 100.0% |
| 4wzzA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.53 | 26.0 | 3.62e-01 | 85.6% | 90.7% |
| 4ry9A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.52 | 24.0 | 3.63e-01 | 77.0% | 100.0% |
| 5cgaE00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.52 | 40.0 | 4.38e-01 | 94.9% | 96.9% |
| 1c3qA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.51 | 43.0 | 4.50e-01 | 97.8% | 98.2% |
| 3milB00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.50 | 34.0 | 3.78e-01 | 96.8% | 85.7% |
ECOD (85)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4590206 | 2002.1.1.82 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › ThiC_Rad_SAM,ThiC-associated | 1.00 | 99.0 | 7.63e-01 | 100.0% | 53.1% |
| 4123757 | 2002.1.1.82 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › ThiC_Rad_SAM,ThiC-associated | 1.00 | 99.0 | 7.54e-01 | 100.0% | 51.3% |
| 4561429 | 2002.1.1.82 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › ThiC_Rad_SAM,ThiC-associated | 1.00 | 99.0 | 7.42e-01 | 100.0% | 48.9% |
| 3958087 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 1.00 | 84.0 | 7.77e-01 | 85.0% | 70.9% |
| 4340557 | 2002.1.1.81 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › ThiC_Rad_SAM | 1.00 | 99.0 | 7.65e-01 | 100.0% | 53.5% |
| 4492246 | 2002.1.1.81 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › ThiC_Rad_SAM | 1.00 | 99.0 | 8.18e-01 | 100.0% | 70.3% |
| 4193922 | 2002.1.1.81 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › ThiC_Rad_SAM | 1.00 | 99.0 | 8.45e-01 | 100.0% | 70.6% |
| 4573565 | 2002.1.1.81 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › ThiC_Rad_SAM | 0.98 | 96.0 | 8.36e-01 | 100.0% | 73.3% |
| 5079814 | 2002.1.1.81 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › ThiC_Rad_SAM | 0.97 | 96.0 | 8.49e-01 | 100.0% | 76.6% |
| 5006605 | 2002.1.1.36 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Pterin_bind | 0.84 | 60.0 | 6.71e-01 | 97.8% | 88.6% |
| 4932293 | 2002.1.1.36 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Pterin_bind | 0.83 | 60.0 | 6.52e-01 | 97.8% | 85.2% |
| 5002982 | 2002.1.1.113 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › CdhD | 0.83 | 61.0 | 6.47e-01 | 97.8% | 82.8% |
| 4522690 | 2002.1.1.132 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GcpE | 0.82 | 64.0 | 7.01e-01 | 99.0% | 94.6% |
| 4935010 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.82 | 60.0 | 6.58e-01 | 97.8% | 88.5% |
| 4340814 | 2002.1.1.132 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GcpE | 0.82 | 64.0 | 6.85e-01 | 99.4% | 89.8% |
| 4163840 | 2002.1.1.132 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GcpE | 0.79 | 65.0 | 6.85e-01 | 99.4% | 92.3% |
| 4079080 | 2002.1.1.76 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DeoC | 0.78 | 52.0 | 6.38e-01 | 91.4% | 100.0% |
| 5013576 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.78 | 60.0 | 6.22e-01 | 97.8% | 84.1% |
| 4580734 | 2002.1.1.97 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TMP-TENI | 0.77 | 54.0 | 6.34e-01 | 97.1% | 97.8% |
| 3302793 | 2002.1.1.132 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GcpE | 0.76 | 66.0 | 6.29e-01 | 100.0% | 78.6% |
| 3599054 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.75 | 59.0 | 6.59e-01 | 98.4% | 100.0% |
| 4219941 | 2002.1.1.119 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › CutC | 0.75 | 57.0 | 6.50e-01 | 93.6% | 100.0% |
| 5051522 | 2002.1.1.158 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Lys-AminoMut_A | 0.75 | 72.0 | 5.92e-01 | 100.0% | 60.0% |
| 8656 | 2002.1.1.143 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Met_asp_mut_E | 0.75 | 72.0 | 6.11e-01 | 100.0% | 66.9% |
| 4336497 | 3269.1.1.1 ↗ | alpha arrays › D-ornithine aminomutase S component-related › D-ornithine aminomutase S component-related › D-ornithine aminomutase S component-related › Lys-AminoMut_A | 0.75 | 72.0 | 5.94e-01 | 100.0% | 60.8% |
| 3698937 | 2002.1.1.9 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › OMPdecase | 0.75 | 60.0 | 6.61e-01 | 99.4% | 100.0% |
| 3958236 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.75 | 69.0 | 5.54e-01 | 95.8% | 58.9% |
| 4963790 | 2002.1.1.69 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MM_CoA_mutase | 0.74 | 69.0 | 5.53e-01 | 96.2% | 58.7% |
| 4936793 | 2002.1.1.69 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MM_CoA_mutase | 0.74 | 69.0 | 5.50e-01 | 96.2% | 58.2% |
| 3282757 | 2002.1.1.143 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Met_asp_mut_E | 0.74 | 70.0 | 6.27e-01 | 100.0% | 74.4% |
| 4133148 | 2002.1.1.69 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MM_CoA_mutase | 0.74 | 69.0 | 5.48e-01 | 96.2% | 57.0% |
| 3504243 | 2002.1.1.119 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › CutC | 0.74 | 57.0 | 6.44e-01 | 93.9% | 100.0% |
| 4933263 | 2002.1.1.78 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PcrB | 0.74 | 58.0 | 6.39e-01 | 100.0% | 98.4% |
| 2466817 | 2002.1.1.277 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › His_biosynth, PcrB | 0.74 | 57.0 | 6.38e-01 | 98.7% | 100.0% |
| 5032523 | 2002.1.1.78 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PcrB | 0.73 | 58.0 | 6.35e-01 | 100.0% | 98.0% |
| 1264276 | 2002.1.1.1 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › RuBisCO_large | 0.73 | 58.0 | 6.00e-01 | 97.1% | 85.8% |
| 4356535 | 2002.1.1.277 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › His_biosynth, PcrB | 0.73 | 58.0 | 6.34e-01 | 100.0% | 97.3% |
| 5049648 | 2002.1.1.78 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PcrB | 0.73 | 58.0 | 6.32e-01 | 100.0% | 96.6% |
| 4961729 | 2002.1.1.174 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MR_MLE_C | 0.73 | 55.0 | 5.53e-01 | 95.2% | 75.6% |
| 5050667 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.72 | 61.0 | 6.51e-01 | 92.3% | 100.0% |
| 5041007 | 2002.1.1.78 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PcrB | 0.72 | 56.0 | 6.24e-01 | 98.7% | 100.0% |
| 5062104 | 2002.1.1.9 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › OMPdecase | 0.72 | 58.0 | 6.38e-01 | 99.0% | 100.0% |
| 4958516 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.72 | 57.0 | 6.27e-01 | 93.6% | 100.0% |
| 4149089 | 2002.1.1.15 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Trp_syntA | 0.71 | 48.0 | 5.40e-01 | 92.0% | 86.1% |
| 4927773 | 2002.1.1.67 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Pro_dh | 0.70 | 50.0 | 5.39e-01 | 87.2% | 83.3% |
| 141624 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.70 | 57.0 | 6.19e-01 | 97.1% | 100.0% |
| 4326744 | 2002.1.1.15 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Trp_syntA | 0.70 | 58.0 | 6.27e-01 | 100.0% | 100.0% |
| 8834 | 2002.1.1.8 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Cellulase | 0.67 | 61.0 | 6.01e-01 | 95.2% | 100.0% |
| 5036387 | 2002.1.1.76 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DeoC | 0.66 | 63.0 | 6.01e-01 | 100.0% | 91.5% |
| 3567135 | 2002.1.1.180 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › hDGE_amylase | 0.66 | 62.0 | 5.38e-01 | 100.0% | 99.6% |
| 3930359 | 1081.1.1.1 ↗ | alpha arrays › Glycogen debranching enzyme (GDE) insertion domain › Glycogen debranching enzyme (GDE) insertion domain › Glycogen debranching enzyme (GDE) insertion domain › hDGE_amylase | 0.65 | 62.0 | 5.63e-01 | 100.0% | 100.0% |
| 3991198 | 2002.1.1.180 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › hDGE_amylase | 0.65 | 62.0 | 5.46e-01 | 100.0% | 99.3% |
| 3209514 | 2002.1.1.180 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › hDGE_amylase | 0.65 | 62.0 | 5.49e-01 | 100.0% | 100.0% |
| 5075445 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.65 | 54.0 | 5.28e-01 | 85.3% | 92.8% |
| 3388294 | 2002.1.1.83 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_1 | 0.65 | 56.0 | 5.43e-01 | 96.8% | 81.4% |
| 3495953 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.65 | 61.0 | 5.50e-01 | 100.0% | 100.0% |
| 4959165 | 2002.1.1.16 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase | 0.65 | 58.0 | 5.73e-01 | 93.9% | 100.0% |
| 4978139 | 2002.1.1.134 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_2 | 0.64 | 54.0 | 5.50e-01 | 94.9% | 89.5% |
| 3220316 | 7516.1.1.69 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_92 | 0.64 | 27.0 | 3.25e-01 | 95.8% | 55.3% |
| 4992536 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.64 | 53.0 | 5.25e-01 | 85.3% | 82.2% |
| 4977044 | 2002.1.1.16 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase | 0.63 | 57.0 | 5.63e-01 | 93.3% | 100.0% |
| 4991003 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.63 | 47.0 | 5.18e-01 | 97.1% | 92.5% |
| 4038040 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.62 | 57.0 | 4.99e-01 | 95.5% | 70.1% |
| 4353758 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.62 | 56.0 | 5.73e-01 | 94.6% | 100.0% |
| 5071022 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.62 | 45.0 | 5.01e-01 | 78.9% | 92.8% |
| 4469481 | 2002.1.1.104 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_2_C | 0.61 | 56.0 | 5.57e-01 | 97.1% | 99.1% |
| 4054666 | 2002.1.1.152 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_3 | 0.61 | 52.0 | 4.81e-01 | 88.2% | 100.0% |
| 3976773 | 2002.1.1.126 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,Radical_SAM_C | 0.60 | 53.0 | 5.40e-01 | 97.4% | 92.6% |
| 1814072 | 2002.1.1.83 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Amidohydro_1 | 0.60 | 52.0 | 5.38e-01 | 96.8% | 95.3% |
| 4129573 | 2007.1.2.11 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_4 | 0.60 | 24.0 | 3.62e-01 | 86.9% | 84.4% |
| 5012375 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.59 | 43.0 | 4.97e-01 | 88.5% | 100.0% |
| 4534796 | 2002.1.1.125 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,SPASM | 0.59 | 54.0 | 5.16e-01 | 97.1% | 97.5% |
| 3970732 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.58 | 25.0 | 3.81e-01 | 82.4% | 95.3% |
| 3952965 | 2002.1.1.67 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Pro_dh | 0.58 | 47.0 | 4.74e-01 | 84.3% | 85.6% |
| 2322645 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.58 | 53.0 | 4.73e-01 | 96.8% | 93.2% |
| None | — | 0.57 | 42.0 | 4.61e-01 | 87.2% | 91.0% | |
| 4942174 | 2002.1.1.67 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Pro_dh | 0.57 | 45.0 | 4.51e-01 | 85.6% | 79.7% |
| 4930502 | 7534.1.1.1 ↗ | a/b three-layered sandwiches › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Undecaprenyl diphosphate synthase › Prenyltransf | 0.57 | 31.0 | 4.14e-01 | 93.9% | 98.8% |
| 4934548 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.54 | 30.0 | 3.97e-01 | 99.4% | 96.5% |
| 3801320 | 2004.1.1.43 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SRP54 | 0.54 | 42.0 | 4.37e-01 | 90.1% | 86.1% |
| 4339599 | 2004.1.1.201 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_26 | 0.54 | 39.0 | 4.42e-01 | 97.8% | 97.4% |
| 4927344 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.54 | 49.0 | 4.81e-01 | 98.1% | 97.1% |
| 5055792 | 7512.1.1.30 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 | 0.52 | 35.0 | 3.90e-01 | 96.2% | 86.3% |
| 4854828 | 7512.1.1.0 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase | 0.51 | 36.0 | 4.18e-01 | 94.6% | 100.0% |
| 4009865 | 7512.1.1.31 ↗ | a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_4_4 | 0.51 | 33.0 | 3.87e-01 | 99.0% | 91.6% |
D2
medium
residues 25-89_526-545
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13667.12 best | ThiC-associated | 101.4 | 2.60e-29 | 89.4% | 87.6% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1mixA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.66 | 34.0 | 3.34e-01 | 80.0% | 46.2% |
| 1krlA00 | 6.20.50.130 | Special › Other non-globular › N-terminal domain of TfIIb › | 0.61 | 30.0 | 3.91e-01 | 72.9% | 88.6% |
| 6wo0A01 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.56 | 40.0 | 3.02e-01 | 96.5% | 30.0% |
| 6g1yA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.53 | 34.0 | 3.06e-01 | 96.5% | 45.8% |
| 3wa7A00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.53 | 44.0 | 2.75e-01 | 90.6% | 39.2% |
| 4z1xA02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.52 | 37.0 | 3.15e-01 | 75.3% | 77.6% |
| 3llcA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 35.0 | 2.53e-01 | 94.1% | 23.4% |
| 5ko9A00 | 3.90.1680.10 | Alpha Beta › Alpha-Beta Complex › hypothetical protein yedk fold › SOS response associated peptidase-like | 0.51 | 35.0 | 2.62e-01 | 74.1% | 69.2% |
| 2ab5A02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.50 | 36.0 | 3.12e-01 | 75.3% | 73.9% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4523097 | 2002.1.1.82 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › ThiC_Rad_SAM,ThiC-associated | 0.98 | 95.0 | 5.53e-01 | 100.0% | 91.1% |
| 4561429 | 2002.1.1.82 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › ThiC_Rad_SAM,ThiC-associated | 0.97 | 94.0 | 5.36e-01 | 100.0% | 82.7% |
| 4973550 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.64 | 36.0 | 3.26e-01 | 71.8% | 39.2% |
| 5083856 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.63 | 37.0 | 3.40e-01 | 71.8% | 42.6% |
| 4931355 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.60 | 35.0 | 3.20e-01 | 71.8% | 42.7% |
| 4959983 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 27.0 | 3.32e-01 | 76.5% | 65.5% |
| 3075885 | 2.1.1.96 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Gp138_N | 0.58 | 37.0 | 3.42e-01 | 74.1% | 48.6% |
| 3419015 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.57 | 35.0 | 4.03e-01 | 75.3% | 100.0% |
| 5075671 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.56 | 37.0 | 2.70e-01 | 70.6% | 23.2% |
| 3208241 | 101.1.8.10 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › DUF3435 | 0.55 | 43.0 | 3.07e-01 | 85.9% | 61.8% |
| 4060637 | 2498.1.1.124 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › PF29610 | 0.55 | 37.0 | 2.58e-01 | 71.8% | 55.9% |
| 5012702 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.53 | 38.0 | 3.47e-01 | 76.5% | 87.0% |
| 3694574 | 5.1.4.31 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lgl_C | 0.52 | 36.0 | 2.26e-01 | 72.9% | 29.3% |
| 3503177 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.52 | 37.0 | 2.37e-01 | 75.3% | 20.9% |
| 3244569 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.51 | 41.0 | 4.14e-01 | 96.5% | 87.1% |
| 5013672 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.51 | 32.0 | 3.63e-01 | 96.5% | 84.6% |
D3
medium
residues 572-627