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CAKLQF020000027.1__CAH1092875.1__SAMEA5780031_03586__00007

Bact-Vir

CAKLQF020000027.1__CAH1092875.1__SAMEA5780031_03586__00007

Identity

Kingdom:
phage

Quality

82.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-235
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.72 33.0 4.83e-01 71.5% 93.6%
5k3hB04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.57 26.0 3.36e-01 86.8% 72.9%
2p7vA00 1.20.120.1370 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Regulator of RNA polymerase sigma(70) subunit, domain 4 0.56 35.0 4.37e-01 89.4% 97.4%
1u7lA02 1.20.1460.10 Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › subunit c (vma5p) of the yeast v-atpase, domain 2 0.56 34.0 3.82e-01 92.3% 76.0%
4kc9A02 1.20.120.1750 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.56 37.0 3.82e-01 85.1% 70.1%
2v0xA01 1.10.287.3160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 35.0 4.08e-01 88.9% 89.9%
3i9wA00 1.20.58.920 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 38.0 3.64e-01 70.6% 95.6%
7aalA01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.51 36.0 3.47e-01 71.1% 78.9%
4nswB01 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.50 39.0 3.78e-01 92.8% 72.7%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4525691 601.27.1.1 alpha bundles › Four-helical up-and-down bundle › MW0975(SA0943)-like › MW0975(SA0943)-like › YkyA 0.64 39.0 4.26e-01 97.0% 70.8%
4663047 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.61 30.0 3.10e-01 83.0% 47.1%
3442053 192.29.1.0 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.59 37.0 4.05e-01 96.2% 73.5%
3713201 4323.1.1.1 alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › V_ATPase_I 0.58 30.0 3.66e-01 89.4% 75.9%
3255232 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.55 39.0 3.85e-01 71.5% 80.8%
3212246 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.55 36.0 4.16e-01 94.9% 89.1%
4109644 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.54 33.0 4.07e-01 87.7% 97.2%
4293733 4006.1.1.1 alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF 0.53 26.0 3.72e-01 86.4% 100.0%
3737956 601.19.1.18 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Mmc1_C 0.53 34.0 3.72e-01 92.8% 75.4%
3248869 601.15.1.0 alpha bundles › Four-helical up-and-down bundle › Proteasome activator reg(alpha) › Proteasome activator reg(alpha) 0.53 32.0 3.59e-01 94.5% 73.7%
3611289 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.52 31.0 3.94e-01 83.0% 96.6%
3805780 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.52 41.0 4.14e-01 96.2% 83.0%
3291648 150.8.1.3 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › PPE › PPE › T7SS_signal 0.50 39.0 3.93e-01 79.6% 96.7%
3714442 4177.1.1.5 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Vps5 0.50 35.0 3.48e-01 70.6% 79.2%
3638546 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.50 38.0 3.86e-01 95.3% 79.1%
D2 high residues 242-310
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 51.0 5.52e-01 100.0% 87.7%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 47.0 5.07e-01 98.6% 79.7%
1g29102 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.71 40.0 4.76e-01 81.2% 84.4%
1tpmA00 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.69 35.0 4.02e-01 72.5% 66.0%
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 47.0 5.16e-01 100.0% 96.2%
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 44.0 4.69e-01 98.6% 80.0%
3zleA03 2.10.70.70 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.66 35.0 4.30e-01 72.5% 89.7%
3nm6B00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.66 40.0 2.75e-01 82.6% 17.9%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.65 43.0 4.38e-01 89.9% 70.1%
4uoiC00 3.30.160.890 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Hepatitis C virus envelope glycoprotein E1, chain C 0.64 39.0 4.44e-01 79.7% 82.4%
2c9oB02 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.64 42.0 3.54e-01 87.0% 40.7%
1azpA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 48.0 4.96e-01 97.1% 84.8%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.64 49.0 4.43e-01 100.0% 61.1%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.63 49.0 4.04e-01 100.0% 45.5%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.63 44.0 4.50e-01 100.0% 77.6%
1l0wA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 40.0 3.52e-01 85.5% 43.4%
1ou8A00 2.30.30.220 Mainly Beta › Roll › SH3 type barrels. › SspB-like 0.62 54.0 4.73e-01 100.0% 64.2%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 41.0 4.29e-01 89.9% 77.0%
6l4qB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 43.0 3.46e-01 73.9% 71.9%
5zg8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 41.0 3.66e-01 85.5% 49.0%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 44.0 4.37e-01 100.0% 77.3%
3d4eA01 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.58 39.0 3.66e-01 85.5% 56.0%
1v1cA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.58 48.0 4.83e-01 100.0% 94.1%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 43.0 3.61e-01 81.2% 86.8%
1ybyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 40.0 4.21e-01 75.4% 98.4%
1tr8A01 2.20.70.30 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › Nascent polypeptide-associated complex domain 0.57 31.0 3.49e-01 72.5% 69.2%
2i6vA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.56 45.0 4.24e-01 89.9% 92.0%
4a18P00 3.30.720.90 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.56 43.0 4.47e-01 89.9% 89.4%
1h10A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 48.0 4.03e-01 97.1% 83.8%
4hntA04 3.10.600.10 Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain 0.55 46.0 4.09e-01 92.8% 87.1%
4l8jA01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.54 40.0 3.61e-01 79.7% 59.2%
4l2iB00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.53 47.0 3.19e-01 100.0% 53.6%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 40.0 3.44e-01 79.7% 78.3%
1efpB00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.52 46.0 3.17e-01 100.0% 56.9%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.51 43.0 3.72e-01 95.7% 92.9%
1cbiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 39.0 3.26e-01 87.0% 80.9%
4fd0A01 2.60.40.3630 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 39.0 3.78e-01 89.9% 73.4%
3n7cA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 43.0 3.78e-01 98.6% 92.6%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4282868 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.78 56.0 5.60e-01 100.0% 74.3%
3456496 4.1.1.75 beta barrels › SH3 › SH3 › SH3 › NdhS 0.78 54.0 4.52e-01 100.0% 43.5%
4461457 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 50.0 5.22e-01 98.6% 75.0%
3976834 4.1.1.156 beta barrels › SH3 › SH3 › SH3 › DUF2158 0.75 47.0 5.36e-01 97.1% 88.0%
4177200 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.74 50.0 5.46e-01 100.0% 87.3%
959119 4.1.1.75 beta barrels › SH3 › SH3 › SH3 › NdhS 0.74 51.0 5.54e-01 98.6% 90.7%
3281945 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.74 57.0 5.19e-01 100.0% 63.3%
4168737 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 53.0 5.26e-01 100.0% 73.0%
4101502 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.73 48.0 5.25e-01 100.0% 87.0%
3941391 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 46.0 4.85e-01 94.2% 73.3%
3440094 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.72 49.0 5.23e-01 100.0% 83.3%
3328489 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 48.0 4.87e-01 100.0% 70.0%
3302818 4.1.1.236 beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.70 45.0 4.90e-01 100.0% 81.8%
3386077 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.70 40.0 4.74e-01 79.7% 86.7%
3935101 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 52.0 5.37e-01 100.0% 84.6%
5036498 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.69 47.0 4.62e-01 100.0% 65.3%
3296864 4.1.1.236 beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.68 44.0 4.71e-01 100.0% 76.7%
4946972 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 52.0 4.72e-01 98.6% 62.2%
3926179 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 51.0 5.26e-01 100.0% 86.2%
5024985 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.67 41.0 4.10e-01 89.9% 60.0%
4946028 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 51.0 4.72e-01 100.0% 63.3%
4593903 4.1.1.14 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.67 51.0 4.64e-01 98.6% 62.2%
5051313 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 49.0 5.05e-01 100.0% 84.6%
4093836 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 46.0 4.86e-01 100.0% 85.0%
4937705 4.1.1.14 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.65 50.0 4.61e-01 100.0% 64.4%
3953959 4.1.1.424 beta barrels › SH3 › SH3 › SH3 › PF29823 0.64 44.0 4.92e-01 95.7% 100.0%
5001589 4.1.1.14 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.64 49.0 4.37e-01 100.0% 58.0%
3512419 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.64 49.0 4.65e-01 100.0% 69.4%
4963741 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.63 42.0 3.44e-01 89.9% 37.6%
3184235 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.61 49.0 3.85e-01 100.0% 41.4%
3898370 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.61 46.0 4.88e-01 100.0% 100.0%
3596265 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 52.0 4.65e-01 100.0% 67.0%
5079534 809.1.1.0 a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP 0.60 41.0 3.76e-01 72.5% 85.3%
4024274 4.1.1.17 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L19 0.59 50.0 4.38e-01 100.0% 61.9%
3684646 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 45.0 4.36e-01 100.0% 72.5%
5068449 101.1.2.141 alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.57 46.0 3.94e-01 87.0% 85.5%
4084890 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 48.0 4.90e-01 95.7% 98.5%
5020056 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.57 44.0 3.65e-01 89.9% 48.3%
5061930 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 48.0 4.33e-01 95.7% 80.0%
3470133 4.1.1.12 beta barrels › SH3 › SH3 › SH3 › PWWP 0.55 44.0 3.76e-01 100.0% 53.5%
3996686 220.1.1.47 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_16 0.54 46.0 3.66e-01 97.1% 53.3%
3408369 284.1.3.4 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK 0.54 40.0 3.94e-01 78.3% 100.0%
3450097 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.54 44.0 3.72e-01 91.3% 69.7%
3269599 4.1.1.25 beta barrels › SH3 › SH3 › SH3 › PAZ 0.53 48.0 4.21e-01 100.0% 72.0%
3225764 840.1.1.0 a+b two layers › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit › RPB5-like RNA polymerase subunit 0.53 41.0 4.40e-01 84.1% 98.3%
4681343 2.10.1.0 beta barrels › OB-fold › CheW › CheW 0.52 43.0 3.91e-01 92.8% 96.8%
3784770 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.52 45.0 4.39e-01 100.0% 90.7%
5025862 2005.1.1.10 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF 0.51 44.0 3.23e-01 100.0% 71.5%
4927889 319.1.1.4 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.50 41.0 4.03e-01 94.2% 82.7%