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CAKLQF020000028.1__CAH1093249.1__SAMEA5780031_03664__00011

Bact-Vir

CAKLQF020000028.1__CAH1093249.1__SAMEA5780031_03664__00011

Identity

Kingdom:
phage

Quality

90.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 76-151
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01019.28 best G_glu_transpept 59.7 3.40e-16 68.4% 9.8%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tfeA02 1.10.286.20 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › 0.69 38.0 4.68e-01 72.4% 91.1%
3cqyB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.59 45.0 3.42e-01 82.9% 66.3%
3ibyD02 1.10.287.1770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 40.0 3.89e-01 76.3% 83.3%
1bd3A00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 39.0 2.87e-01 78.9% 54.9%
2ld5A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.53 34.0 3.64e-01 84.2% 74.6%
3ls1A00 1.20.120.290 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle 0.51 37.0 3.12e-01 76.3% 82.0%
5axmB00 3.30.70.3000 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) 0.50 36.0 2.61e-01 75.0% 43.9%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1844315 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.96 82.0 5.19e-01 89.5% 22.0%
1100099 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.96 84.0 5.21e-01 92.1% 20.1%
1069582 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.96 74.0 4.80e-01 82.9% 21.8%
5063693 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.95 84.0 4.84e-01 92.1% 12.4%
2760247 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.95 75.0 4.67e-01 84.2% 18.5%
2570058 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.94 83.0 5.13e-01 93.4% 19.6%
344253 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.94 82.0 5.07e-01 92.1% 19.7%
1318516 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.94 81.0 5.02e-01 90.8% 19.0%
1831093 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.91 81.0 5.06e-01 93.4% 20.4%
4771097 210.1.4.1 a+b four layers › Ntn/PP2C › Ntn › (Glycosyl)asparaginase › Asparaginase_2 0.76 59.0 4.79e-01 82.9% 52.9%
4267135 633.2.1.0 alpha bundles › Bromodomain-like › Carnobacteriocin B2 immunity protein › Carnobacteriocin B2 immunity protein 0.60 41.0 4.00e-01 71.1% 89.4%
5021144 101.1.1.545 alpha arrays › HTH › HTH › Three-helical HTH › DUF1699 0.59 36.0 4.05e-01 89.5% 81.8%
4998613 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.59 43.0 3.90e-01 100.0% 58.0%
3587205 633.2.1.1 alpha bundles › Bromodomain-like › Carnobacteriocin B2 immunity protein › Carnobacteriocin B2 immunity protein › EntA_Immun 0.57 39.0 3.70e-01 71.1% 82.2%
3206153 109.4.1.1456 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N, HEAT_IPO9_c 0.57 43.0 2.49e-01 84.2% 36.2%
5004327 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.56 41.0 3.65e-01 96.1% 52.2%
3989616 2002.1.1.4 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Alpha-amylase 0.53 42.0 2.55e-01 84.2% 90.1%
387652 601.18.1.1 alpha bundles › Four-helical up-and-down bundle › Oxygen-evolving enhancer protein 3 › Oxygen-evolving enhancer protein 3 › PsbQ 0.51 37.0 3.12e-01 76.3% 82.0%
D2 medium residues 152-164_333-442
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01019.28 best G_glu_transpept 80.9 1.30e-22 91.1% 18.6%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dbuA02 1.10.246.130 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain 0.97 73.0 7.69e-01 87.0% 84.7%
4ottA02 1.10.246.130 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain 0.94 70.0 7.14e-01 87.0% 77.7%
5zjgA02 1.10.246.130 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain 0.90 69.0 7.22e-01 87.0% 85.7%
2iw3A02 1.20.1390.20 Mainly Alpha › Up-down Bundle › PWI domain › 0.58 32.0 3.67e-01 89.4% 72.2%
2erbA01 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.55 30.0 3.23e-01 83.7% 58.9%
3jsbA01 1.20.1440.300 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain 0.54 29.0 3.37e-01 98.4% 74.1%
5ts9B00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.51 35.0 3.27e-01 87.8% 54.0%
4tzmB00 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.51 44.0 3.64e-01 95.9% 97.8%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3953727 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.96 94.0 5.78e-01 100.0% 48.7%
3959809 210.1.6.0 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like 0.94 86.0 6.32e-01 93.5% 45.2%
344253 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.87 85.0 5.83e-01 100.0% 74.9%
1831093 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.86 84.0 5.75e-01 100.0% 75.3%
1318516 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.85 82.0 5.61e-01 100.0% 71.9%
3967418 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.85 82.0 5.17e-01 100.0% 50.6%
2760247 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.84 81.0 5.67e-01 100.0% 77.3%
87557 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.81 78.0 5.30e-01 100.0% 64.1%
3726363 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 39.0 3.76e-01 80.5% 90.7%
D3 medium residues 443-479_550-661
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01019.28 best G_glu_transpept 49.3 5.00e-13 74.5% 19.5%
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dbuB00 3.60.20.40 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Gamma-glutamyltranspeptidase, small (S) subunit 0.89 71.0 6.44e-01 81.9% 100.0%
4gdxB00 3.60.20.40 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Gamma-glutamyltranspeptidase, small (S) subunit 0.88 70.0 6.38e-01 81.9% 100.0%
3g9kF01 3.60.20.40 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Gamma-glutamyltranspeptidase, small (S) subunit 0.81 63.0 6.15e-01 80.5% 100.0%
1rypD00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.57 45.0 3.86e-01 84.6% 65.1%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3953727 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.95 91.0 5.76e-01 97.3% 38.3%
3428182 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.91 69.0 6.03e-01 77.9% 100.0%
4032603 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.89 86.0 5.55e-01 100.0% 38.5%
363370 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.87 67.0 6.11e-01 78.5% 100.0%
2756449 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.87 70.0 6.26e-01 82.6% 99.5%
3312619 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.86 81.0 5.25e-01 97.3% 41.8%
1069541 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.85 69.0 6.30e-01 82.6% 98.4%
3174070 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.85 81.0 5.21e-01 98.0% 37.3%
3785419 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.85 80.0 5.20e-01 97.3% 38.9%
3279768 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.85 80.0 5.12e-01 98.0% 41.2%
4049738 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.85 80.0 5.24e-01 98.7% 39.1%
3740237 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.85 81.0 5.24e-01 98.0% 38.7%
3524281 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.84 80.0 6.77e-01 98.0% 92.4%
3195075 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.84 80.0 5.07e-01 98.7% 41.9%
3186958 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.84 80.0 5.15e-01 98.0% 39.7%
3693204 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.84 79.0 5.12e-01 96.6% 38.7%
4001225 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.83 77.0 5.04e-01 96.6% 39.1%
4978403 210.1.6.0 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like 0.83 78.0 5.12e-01 98.0% 38.3%
4674835 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.82 78.0 5.08e-01 98.0% 35.9%
3567072 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.82 77.0 5.07e-01 97.3% 39.2%
3887968 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.82 77.0 5.05e-01 98.0% 37.7%
3404000 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.82 76.0 5.02e-01 96.6% 36.5%
365672 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.81 65.0 6.26e-01 82.6% 100.0%
3970635 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.81 76.0 4.98e-01 98.0% 36.6%
3750260 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.80 75.0 4.89e-01 96.6% 37.6%
5063693 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.80 75.0 4.85e-01 98.0% 39.3%
4614515 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.78 73.0 4.85e-01 97.3% 45.3%
4425455 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.76 71.0 4.81e-01 98.7% 48.7%
4955721 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.74 69.0 4.63e-01 96.6% 46.2%
4991392 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.71 65.0 4.50e-01 96.6% 46.6%
D4 medium residues 480-549
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01019.28 best G_glu_transpept 56.5 3.20e-15 98.6% 13.2%
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4gdxB00 3.60.20.40 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Gamma-glutamyltranspeptidase, small (S) subunit 0.84 80.0 5.59e-01 100.0% 38.6%
2dbuB00 3.60.20.40 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Gamma-glutamyltranspeptidase, small (S) subunit 0.83 79.0 5.53e-01 100.0% 38.4%
5hftD00 3.60.20.40 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Gamma-glutamyltranspeptidase, small (S) subunit 0.76 64.0 4.91e-01 100.0% 41.6%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3953727 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.95 91.0 5.17e-01 100.0% 12.5%
1069541 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.94 82.0 5.74e-01 100.0% 34.2%
3959809 210.1.6.0 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like 0.93 86.0 5.52e-01 95.7% 25.6%
3524281 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.85 81.0 5.43e-01 100.0% 32.4%
2756449 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.84 80.0 5.58e-01 100.0% 37.6%
363370 210.1.6.1 a+b four layers › Ntn/PP2C › Ntn › Gamma-glutamyltranspeptidase-like › G_glu_transpept 0.83 79.0 5.56e-01 100.0% 38.8%