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CAKLQF020000028.1__CAH1093285.1__SAMEA5780031_03676__00023

Bact-Vir

CAKLQF020000028.1__CAH1093285.1__SAMEA5780031_03676__00023

Identity

Kingdom:
phage

Quality

95.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 33-221
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01168.27 best Ala_racemase_N 68.7 8.50e-19 100.0% 81.8%
CATH (62)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1w8gA00 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.96 94.0 8.71e-01 100.0% 85.8%
7f8eA01 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.95 92.0 8.66e-01 100.0% 88.6%
3cpgA00 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.94 91.0 8.08e-01 100.0% 82.6%
3r79A00 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.93 89.0 8.26e-01 100.0% 81.5%
1ct5A00 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.93 90.0 8.35e-01 100.0% 83.8%
4lusA02 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.85 81.0 7.75e-01 99.5% 89.8%
1hkvA02 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.85 81.0 7.15e-01 100.0% 91.6%
8d88A01 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.84 80.0 7.15e-01 99.5% 90.9%
4beqA02 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.84 80.0 7.59e-01 99.5% 89.9%
5yycA02 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.84 80.0 7.58e-01 99.5% 89.4%
2dy3C02 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.83 79.0 7.60e-01 99.5% 89.9%
3anuA02 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.83 79.0 7.41e-01 99.5% 89.7%
3n2oA02 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.83 79.0 6.75e-01 100.0% 87.9%
3oo2A02 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.82 78.0 7.52e-01 99.5% 90.0%
3c5qA02 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.82 77.0 6.98e-01 98.4% 90.9%
1rcqA02 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.82 77.0 7.43e-01 100.0% 89.4%
7kh2B01 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.81 77.0 6.86e-01 100.0% 89.8%
2j66A02 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.81 76.0 6.86e-01 100.0% 90.4%
2pljA02 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.79 75.0 7.00e-01 100.0% 90.0%
3mubA02 3.20.20.10 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Alanine racemase 0.79 75.0 7.11e-01 100.0% 86.2%
6xh5B01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.77 65.0 6.48e-01 100.0% 85.8%
6r62A00 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.75 71.0 6.38e-01 100.0% 88.1%
2bmbA02 3.20.20.20 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like 0.75 70.0 5.77e-01 100.0% 93.5%
4mwaA00 3.20.20.20 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like 0.75 70.0 6.23e-01 100.0% 82.3%
3ktsA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.74 64.0 6.51e-01 100.0% 93.0%
3tr9B00 3.20.20.20 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like 0.74 69.0 6.06e-01 99.5% 86.7%
1vliA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.73 68.0 5.80e-01 100.0% 76.8%
1ad1A00 3.20.20.20 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like 0.73 68.0 6.03e-01 100.0% 89.8%
6uczB00 3.20.20.20 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Dihydropteroate synthase-like 0.72 67.0 5.97e-01 99.5% 92.8%
3qw3A01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.72 67.0 6.10e-01 100.0% 84.3%
6bmaA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.69 65.0 5.78e-01 100.0% 75.7%
3l12B00 3.20.20.190 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase 0.69 65.0 5.51e-01 100.0% 89.5%
2o55A00 3.20.20.190 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase 0.69 65.0 5.80e-01 100.0% 93.7%
4j9jA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.69 64.0 6.00e-01 100.0% 95.2%
1jcmP00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.69 64.0 5.71e-01 100.0% 73.0%
3ks6A00 3.20.20.190 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase 0.69 64.0 5.79e-01 100.0% 92.0%
2oogD00 3.20.20.190 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase 0.68 64.0 5.63e-01 100.0% 91.8%
2otdA01 3.20.20.190 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase 0.68 63.0 5.85e-01 97.9% 98.7%
3simA00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.68 62.0 5.49e-01 100.0% 93.8%
3ch0A00 3.20.20.190 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase 0.67 63.0 5.54e-01 100.0% 94.1%
3l23A00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.67 62.0 5.40e-01 100.0% 93.6%
8balC01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.67 62.0 5.18e-01 100.0% 90.3%
3fndA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.67 61.0 5.47e-01 100.0% 88.0%
1vd6A00 3.20.20.190 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase 0.66 62.0 5.95e-01 100.0% 95.0%
2z6iA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.66 60.0 5.02e-01 100.0% 58.2%
2nw0A00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.66 54.0 5.47e-01 100.0% 86.8%
2oktA02 3.20.20.120 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Enolase-like C-terminal domain 0.65 60.0 5.84e-01 99.5% 92.7%
5csrC00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.64 60.0 5.71e-01 100.0% 91.4%
1lwjA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.64 59.0 4.87e-01 100.0% 85.0%
2gduA01 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.63 59.0 4.75e-01 100.0% 90.9%
5lsmG00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.63 58.0 4.78e-01 100.0% 65.3%
1v77A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.62 55.0 5.44e-01 95.8% 92.1%
3dugA02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.59 53.0 4.60e-01 100.0% 86.3%
2vzoA03 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.58 53.0 4.38e-01 100.0% 87.6%
1xw8A00 3.20.20.370 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase/deacetylase 0.55 51.0 4.79e-01 100.0% 90.8%
3vvbA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 43.0 3.87e-01 88.9% 92.6%
1mldA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 36.0 3.97e-01 75.1% 90.3%
6c49A02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 36.0 3.92e-01 96.8% 86.3%
6ldqA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.51 40.0 4.13e-01 97.4% 87.2%
5itwA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 45.0 4.07e-01 97.4% 82.0%
1q0qA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 38.0 4.18e-01 92.6% 98.0%
3zq4A01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.50 44.0 3.91e-01 98.9% 94.5%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4368589 2002.1.1.53 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ala_racemase_N 0.97 95.0 8.76e-01 100.0% 83.8%
3976894 2002.1.1.53 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ala_racemase_N 0.97 95.0 8.73e-01 100.0% 84.3%
3277769 2002.1.1.53 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ala_racemase_N 0.96 94.0 8.33e-01 100.0% 80.4%
3539355 2002.1.1.53 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ala_racemase_N 0.96 94.0 8.16e-01 100.0% 78.5%
3587280 2002.1.1.53 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ala_racemase_N 0.95 93.0 8.64e-01 100.0% 85.3%
3924940 2002.1.1.53 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ala_racemase_N 0.95 93.0 8.33e-01 100.0% 83.5%
2543654 2002.1.1.53 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ala_racemase_N 0.95 92.0 8.61e-01 100.0% 87.4%
2117123 2002.1.1.53 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ala_racemase_N 0.95 92.0 8.70e-01 100.0% 89.4%
3705827 2002.1.1.53 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ala_racemase_N 0.94 92.0 8.33e-01 100.0% 82.5%
5019913 2002.1.1.53 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ala_racemase_N 0.94 92.0 8.62e-01 100.0% 86.8%
167904 2002.1.1.53 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ala_racemase_N 0.94 91.0 8.08e-01 100.0% 82.6%
3991071 2002.1.1.53 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ala_racemase_N 0.94 91.0 7.63e-01 100.0% 84.4%
5060290 2002.1.1.53 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ala_racemase_N 0.93 90.0 8.24e-01 100.0% 82.6%
4943978 2002.1.1.53 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ala_racemase_N 0.92 90.0 8.19e-01 100.0% 83.4%
None 0.92 90.0 8.68e-01 99.5% 92.2%
3839012 2002.1.1.53 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ala_racemase_N 0.91 89.0 8.42e-01 100.0% 87.9%
3474100 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.87 83.0 7.91e-01 100.0% 86.5%
4655749 2002.1.1.53 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ala_racemase_N 0.86 83.0 7.55e-01 100.0% 80.4%
4033844 2002.1.1.53 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ala_racemase_N 0.86 83.0 7.62e-01 100.0% 80.9%
3977844 2002.1.1.53 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ala_racemase_N 0.86 83.0 7.41e-01 100.0% 77.6%
4075966 2002.1.1.53 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ala_racemase_N 0.85 82.0 7.43e-01 100.0% 82.5%
4067516 2002.1.1.53 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ala_racemase_N 0.85 81.0 7.24e-01 100.0% 76.5%
3378761 2002.1.1.53 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ala_racemase_N 0.85 64.0 7.10e-01 76.7% 100.0%
4241557 2002.1.1.53 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ala_racemase_N 0.85 81.0 7.47e-01 100.0% 83.4%
4651941 2002.1.1.53 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ala_racemase_N 0.85 81.0 7.29e-01 100.0% 76.8%
223318 2002.1.1.53 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ala_racemase_N 0.85 81.0 7.28e-01 100.0% 79.7%
4351793 2002.1.1.53 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ala_racemase_N 0.84 80.0 7.31e-01 100.0% 82.1%
4676184 2002.1.1.53 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ala_racemase_N 0.84 80.0 7.15e-01 100.0% 78.4%
5045635 2002.1.1.53 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ala_racemase_N 0.82 78.0 7.03e-01 100.0% 81.2%
4588412 2002.1.1.53 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ala_racemase_N 0.82 79.0 7.18e-01 100.0% 79.6%
4995138 2002.1.1.53 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Ala_racemase_N 0.82 78.0 7.11e-01 100.0% 83.7%
3279104 2002.1.1.101 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Orn_Arg_deC_N 0.81 77.0 6.67e-01 100.0% 90.2%
2705942 2002.1.1.101 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Orn_Arg_deC_N 0.81 77.0 6.84e-01 100.0% 89.1%
5050868 2002.1.1.101 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Orn_Arg_deC_N 0.80 75.0 6.88e-01 100.0% 90.0%
4881894 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.74 70.0 6.34e-01 99.5% 83.1%
3952556 2002.1.1.16 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase 0.73 68.0 6.04e-01 100.0% 91.3%
3281497 2002.1.1.16 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Bac_luciferase 0.72 68.0 6.04e-01 100.0% 91.5%
5028484 2002.1.1.109 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › NeuB 0.72 68.0 5.82e-01 100.0% 82.5%
5069122 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.70 62.0 5.20e-01 95.2% 75.9%
None 0.69 64.0 5.20e-01 100.0% 61.5%
None 0.68 61.0 5.01e-01 95.2% 84.5%
3176516 2002.1.1.108 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › NMO 0.67 62.0 4.92e-01 100.0% 68.7%
4978539 2002.1.1.106 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GDPD 0.66 62.0 5.79e-01 100.0% 94.3%
4950611 2002.1.1.106 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GDPD 0.66 62.0 5.77e-01 100.0% 92.6%
None 0.66 61.0 4.83e-01 100.0% 90.8%
3668475 2002.1.1.108 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › NMO 0.64 59.0 4.91e-01 100.0% 56.8%
4180693 2002.1.1.108 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › NMO 0.64 57.0 4.59e-01 95.2% 89.0%
5051105 2002.1.1.108 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › NMO 0.64 59.0 4.97e-01 100.0% 61.0%
4423414 2002.1.1.4 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Alpha-amylase 0.64 59.0 4.46e-01 100.0% 89.7%
None 0.61 54.0 4.99e-01 94.7% 86.0%
4286102 7512.1.1.31 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_trans_4_4 0.52 41.0 4.30e-01 97.4% 89.7%
5057769 7512.1.1.30 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.52 41.0 4.16e-01 96.8% 82.6%
3238631 2484.1.1.190 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FBA_2 0.51 45.0 4.06e-01 94.7% 95.4%
5033355 2003.1.1.386 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Sacchrp_dh_C 0.51 46.0 3.64e-01 96.8% 83.4%
5046456 2007.1.7.3 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Rossmann-like domain in dehydroquinate synthase-like enzymes › Fe-ADH_2 0.50 34.0 3.91e-01 98.9% 94.8%