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CAKLQF020000028.1__CAH1093309.1__SAMEA5780031_03684__00031
Bact-VirCAKLQF020000028.1__CAH1093309.1__SAMEA5780031_03684__00031
Identity
- Kingdom:
- phage
Quality
87.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-90
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13230.12 best | GATase_4 | 124.5 | 5.70e-36 | 100.0% | 33.7% |
CATH (47)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4zfjD00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.86 | 81.0 | 5.82e-01 | 100.0% | 44.1% |
| 1xffA00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.81 | 72.0 | 5.20e-01 | 100.0% | 36.1% |
| 1te5A00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.78 | 73.0 | 5.15e-01 | 100.0% | 35.6% |
| 6czfA01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.78 | 68.0 | 4.59e-01 | 100.0% | 26.5% |
| 3ndcA02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.67 | 49.0 | 4.43e-01 | 87.8% | 56.1% |
| 1cbfA02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.67 | 48.0 | 4.40e-01 | 91.1% | 57.0% |
| 1r9fA01 | 3.30.390.180 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › RNA silencing suppressor P19 | 0.66 | 47.0 | 4.39e-01 | 73.3% | 67.9% |
| 1cauA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.66 | 40.0 | 3.21e-01 | 84.4% | 29.8% |
| 1unnC00 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.65 | 52.0 | 4.90e-01 | 87.8% | 86.5% |
| 3ffyA00 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.64 | 50.0 | 4.65e-01 | 83.3% | 100.0% |
| 4o9gA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.64 | 39.0 | 3.46e-01 | 84.4% | 40.6% |
| 4mzuF02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.64 | 40.0 | 3.44e-01 | 84.4% | 38.5% |
| 3q8pB04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.63 | 49.0 | 4.66e-01 | 84.4% | 93.5% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.62 | 43.0 | 4.82e-01 | 78.9% | 98.5% |
| 7bv5D01 | 3.40.140.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 | 0.61 | 43.0 | 3.51e-01 | 94.4% | 40.5% |
| 1x67A01 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.60 | 37.0 | 3.28e-01 | 93.3% | 41.4% |
| 4h3wA02 | 2.60.120.1260 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 46.0 | 3.91e-01 | 85.6% | 62.5% |
| 2mp4A00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.57 | 39.0 | 3.23e-01 | 70.0% | 67.3% |
| 2bnmA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.57 | 36.0 | 3.33e-01 | 84.4% | 47.5% |
| 1yq5A00 | 2.60.120.670 | Mainly Beta › Sandwich › Jelly Rolls › Minor capsid protein. | 0.56 | 46.0 | 3.93e-01 | 88.9% | 93.1% |
| 3oovA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.56 | 41.0 | 3.42e-01 | 78.9% | 77.4% |
| 2pn5A08 | 2.60.120.1540 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 43.0 | 4.04e-01 | 84.4% | 84.7% |
| 3r8qA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 42.0 | 4.30e-01 | 87.8% | 82.2% |
| 1ve2B02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.55 | 49.0 | 4.51e-01 | 100.0% | 77.4% |
| 4rdbA01 | 2.60.40.2580 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 45.0 | 3.87e-01 | 92.2% | 67.8% |
| 4ca1B02 | 2.60.210.10 | Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 0.54 | 43.0 | 3.88e-01 | 88.9% | 87.9% |
| 3zn6A01 | 2.60.120.1170 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 42.0 | 3.74e-01 | 85.6% | 62.7% |
| 2q9kA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.54 | 39.0 | 3.31e-01 | 74.4% | 82.3% |
| 1ywhC03 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.54 | 35.0 | 3.56e-01 | 76.7% | 67.0% |
| 3na2A00 | 3.40.1570.20 | Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › | 0.54 | 38.0 | 3.38e-01 | 75.6% | 73.9% |
| 1y8xB00 | 3.10.290.20 | Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › Ubiquitin-like 2 activating enzyme e1b. Chain: B, domain 3 | 0.53 | 42.0 | 4.26e-01 | 88.9% | 87.0% |
| 1pjqB05 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.53 | 47.0 | 4.25e-01 | 100.0% | 96.8% |
| 1o07A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.53 | 37.0 | 2.48e-01 | 71.1% | 23.4% |
| 2e3vA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 43.0 | 4.11e-01 | 87.8% | 76.7% |
| 4h32A02 | 3.90.209.20 | Alpha Beta › Alpha-Beta Complex › Hemagglutinin (Ha1 Chain); Chain: A; domain 1 › Haemagglutinin, alpha/beta domain, HA1 chain | 0.52 | 42.0 | 3.23e-01 | 90.0% | 50.5% |
| 2v5yA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 42.0 | 4.11e-01 | 90.0% | 79.4% |
| 1va0B02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.52 | 46.0 | 4.18e-01 | 100.0% | 99.2% |
| 1zq1A01 | 2.30.30.520 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 36.0 | 3.86e-01 | 73.3% | 92.2% |
| 4gxbA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 38.0 | 3.71e-01 | 78.9% | 94.8% |
| 4lejA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 36.0 | 2.91e-01 | 74.4% | 53.9% |
| 3eeaA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.51 | 38.0 | 3.21e-01 | 80.0% | 79.7% |
| 6ovbA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.50 | 39.0 | 3.35e-01 | 85.6% | 84.4% |
| 3s7iB01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.50 | 45.0 | 3.54e-01 | 98.9% | 69.2% |
| 3e4vA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.50 | 38.0 | 3.19e-01 | 84.4% | 52.3% |
| 6l4cA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.50 | 45.0 | 3.54e-01 | 98.9% | 70.7% |
| 1yqsA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.50 | 38.0 | 2.59e-01 | 81.1% | 94.2% |
| 5mj3A03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 39.0 | 4.01e-01 | 97.8% | 88.5% |
ECOD (75)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3942872 | 210.1.3.3 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 | 0.99 | 97.0 | 6.60e-01 | 100.0% | 35.3% |
| 3965213 | 210.1.3.3 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 | 0.99 | 96.0 | 6.45e-01 | 100.0% | 32.7% |
| 4960069 | 210.1.3.3 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 | 0.95 | 88.0 | 6.22e-01 | 100.0% | 37.4% |
| 3782814 | 210.1.3.3 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 | 0.90 | 85.0 | 5.70e-01 | 100.0% | 34.7% |
| 5054721 | 210.1.3.3 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 | 0.90 | 81.0 | 5.75e-01 | 100.0% | 35.8% |
| 5046400 | 210.1.3.3 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 | 0.89 | 81.0 | 5.59e-01 | 100.0% | 32.5% |
| 5038401 | 210.1.3.3 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 | 0.89 | 84.0 | 5.70e-01 | 100.0% | 35.4% |
| 4100017 | 210.1.3.3 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 | 0.88 | 83.0 | 5.68e-01 | 100.0% | 37.1% |
| 5081419 | 210.1.3.3 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 | 0.88 | 83.0 | 5.68e-01 | 100.0% | 38.1% |
| 5041223 | 210.1.3.3 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 | 0.88 | 83.0 | 5.52e-01 | 100.0% | 33.1% |
| 5001463 | 210.1.3.3 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 | 0.87 | 82.0 | 5.53e-01 | 100.0% | 33.2% |
| 5070626 | 210.1.3.3 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 | 0.87 | 82.0 | 5.73e-01 | 100.0% | 40.8% |
| 5027271 | 210.1.3.3 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 | 0.87 | 82.0 | 5.75e-01 | 100.0% | 38.0% |
| 3961853 | 210.1.3.3 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 | 0.86 | 81.0 | 5.83e-01 | 100.0% | 44.8% |
| 5012635 | 210.1.3.3 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 | 0.85 | 80.0 | 5.55e-01 | 100.0% | 38.5% |
| 3283168 | 210.1.3.3 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 | 0.85 | 79.0 | 5.49e-01 | 100.0% | 38.9% |
| 4991735 | 210.1.3.0 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases | 0.84 | 76.0 | 5.48e-01 | 100.0% | 37.4% |
| 5077548 | 210.1.3.0 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases | 0.84 | 79.0 | 5.33e-01 | 100.0% | 35.9% |
| None | — | 0.84 | 74.0 | 5.27e-01 | 100.0% | 35.0% | |
| 4940798 | 210.1.3.5 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 | 0.84 | 75.0 | 5.35e-01 | 100.0% | 35.1% |
| 4680317 | 210.1.3.4 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 | 0.84 | 73.0 | 5.23e-01 | 100.0% | 35.3% |
| None | — | 0.83 | 74.0 | 5.28e-01 | 100.0% | 35.4% | |
| 3280543 | 210.1.3.5 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 | 0.83 | 74.0 | 5.24e-01 | 100.0% | 34.7% |
| 4259223 | 210.1.3.5 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 | 0.82 | 73.0 | 5.24e-01 | 100.0% | 36.2% |
| None | — | 0.82 | 72.0 | 5.15e-01 | 100.0% | 35.0% | |
| 5024442 | 210.1.3.3 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 | 0.82 | 77.0 | 5.46e-01 | 100.0% | 40.0% |
| 3973007 | 210.1.3.0 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases | 0.82 | 71.0 | 5.05e-01 | 100.0% | 33.6% |
| None | — | 0.81 | 72.0 | 5.19e-01 | 100.0% | 36.2% | |
| None | — | 0.81 | 70.0 | 5.07e-01 | 100.0% | 35.3% | |
| 4484517 | 210.1.3.5 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 | 0.81 | 72.0 | 5.09e-01 | 100.0% | 34.0% |
| 3963821 | 210.1.3.5 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 | 0.81 | 72.0 | 5.09e-01 | 100.0% | 34.0% |
| 5075402 | 210.1.3.3 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 | 0.81 | 74.0 | 5.08e-01 | 100.0% | 30.9% |
| 3741900 | 210.1.3.5 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 | 0.80 | 73.0 | 5.11e-01 | 100.0% | 33.8% |
| 4944470 | 210.1.3.3 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 | 0.80 | 73.0 | 5.24e-01 | 100.0% | 42.4% |
| 4991572 | 210.1.3.5 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 | 0.79 | 74.0 | 5.28e-01 | 100.0% | 40.8% |
| 5013417 | 210.1.3.5 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 | 0.79 | 67.0 | 4.83e-01 | 100.0% | 34.5% |
| 5048308 | 210.1.3.5 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 | 0.79 | 70.0 | 5.10e-01 | 100.0% | 37.8% |
| 4994995 | 210.1.3.5 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 | 0.78 | 68.0 | 4.92e-01 | 100.0% | 35.7% |
| 5033976 | 210.1.3.5 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 | 0.78 | 70.0 | 5.02e-01 | 100.0% | 36.3% |
| 4588679 | 210.1.3.4 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 | 0.78 | 72.0 | 5.14e-01 | 100.0% | 37.6% |
| 5066749 | 210.1.3.5 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 | 0.77 | 70.0 | 5.05e-01 | 100.0% | 38.0% |
| 4981026 | 210.1.3.5 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 | 0.76 | 65.0 | 4.71e-01 | 100.0% | 34.6% |
| 4986617 | 210.1.3.0 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases | 0.76 | 63.0 | 4.67e-01 | 100.0% | 36.4% |
| 4976794 | 210.1.3.5 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 | 0.75 | 66.0 | 4.86e-01 | 100.0% | 37.4% |
| 4961361 | 1137.1.1.1 ↗ | a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase | 0.68 | 49.0 | 4.45e-01 | 95.6% | 56.7% |
| 3980153 | 1137.1.1.1 ↗ | a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase | 0.66 | 49.0 | 4.28e-01 | 93.3% | 50.7% |
| 5025546 | 1137.1.1.1 ↗ | a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase | 0.66 | 52.0 | 4.58e-01 | 100.0% | 57.7% |
| 4197453 | 1137.1.1.1 ↗ | a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase | 0.66 | 49.0 | 4.37e-01 | 94.4% | 54.6% |
| 4324489 | 1137.1.1.1 ↗ | a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase | 0.66 | 49.0 | 4.38e-01 | 93.3% | 56.0% |
| 5011710 | 1137.1.1.1 ↗ | a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase | 0.65 | 50.0 | 4.36e-01 | 92.2% | 54.1% |
| 3433812 | 1137.1.1.1 ↗ | a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase | 0.65 | 49.0 | 4.35e-01 | 97.8% | 54.1% |
| 4538391 | 1137.1.1.1 ↗ | a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase | 0.65 | 51.0 | 4.31e-01 | 100.0% | 50.7% |
| 1937092 | 1137.1.1.1 ↗ | a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase | 0.64 | 50.0 | 4.65e-01 | 83.3% | 100.0% |
| 3739303 | 302.1.1.1 ↗ | a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C | 0.64 | 49.0 | 4.54e-01 | 84.4% | 84.2% |
| 4398420 | 1137.1.1.0 ↗ | a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain | 0.63 | 50.0 | 4.56e-01 | 85.6% | 79.2% |
| 4989296 | 862.1.1.0 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain | 0.62 | 54.0 | 3.79e-01 | 96.7% | 81.0% |
| 3960631 | 1137.1.1.0 ↗ | a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain | 0.58 | 48.0 | 4.02e-01 | 92.2% | 91.3% |
| 4954188 | 2492.1.1.7 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ | 0.57 | 34.0 | 2.90e-01 | 93.3% | 35.6% |
| 3222177 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.56 | 40.0 | 4.00e-01 | 75.6% | 89.2% |
| 4591860 | 11.1.1.1125 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF30142 | 0.55 | 42.0 | 3.87e-01 | 84.4% | 77.6% |
| 3302171 | 11.10.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › Sina_TRAF | 0.55 | 44.0 | 3.87e-01 | 87.8% | 92.6% |
| 3937491 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 45.0 | 3.96e-01 | 90.0% | 89.6% |
| 3596353 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.54 | 42.0 | 3.80e-01 | 83.3% | 92.0% |
| 4240242 | 10.32.1.75 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GH101_dom-5 | 0.54 | 43.0 | 3.64e-01 | 85.6% | 57.2% |
| 1161758 | 10.4.1.2 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › C3_CUB2 | 0.53 | 38.0 | 3.59e-01 | 75.6% | 80.7% |
| 3967527 | 4216.1.1.1 ↗ | a+b duplicates or obligate multimers › Heme iron utilization protein-like › Heme iron utilization protein-like › Heme iron utilization protein-like › HemS | 0.53 | 41.0 | 3.42e-01 | 84.4% | 71.6% |
| 3226243 | 10.32.1.218 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF7154 | 0.53 | 41.0 | 3.80e-01 | 84.4% | 69.6% |
| 3960268 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.53 | 39.0 | 3.30e-01 | 78.9% | 67.7% |
| 4259034 | 223.3.1.1 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase | 0.53 | 36.0 | 2.84e-01 | 71.1% | 42.0% |
| 4417467 | 223.1.1.3 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF | 0.52 | 39.0 | 3.40e-01 | 81.1% | 77.2% |
| 3704468 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.52 | 42.0 | 3.96e-01 | 88.9% | 96.4% |
| 3929258 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.52 | 41.0 | 4.17e-01 | 86.7% | 94.4% |
| 3655914 | 206.1.3.16 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Ins134_P3_kin | 0.51 | 44.0 | 3.30e-01 | 100.0% | 79.2% |
| 4022629 | 223.3.1.0 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins | 0.50 | 37.0 | 2.74e-01 | 80.0% | 77.3% |
| 4120485 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.50 | 39.0 | 2.58e-01 | 84.4% | 38.7% |
D2
medium
residues 91-184_234-276
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13230.12 best | GATase_4 | 114.6 | 5.60e-33 | 70.1% | 34.4% |
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1te5A00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.96 | 77.0 | 5.97e-01 | 81.0% | 62.5% |
| 3mdnD00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.74 | 61.0 | 5.08e-01 | 85.4% | 87.4% |
| 4zfjD00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.73 | 59.0 | 4.88e-01 | 83.9% | 54.6% |
| 1ao0A01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.72 | 67.0 | 5.05e-01 | 97.8% | 71.0% |
| 3ke6B01 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.58 | 43.0 | 3.67e-01 | 77.4% | 53.4% |
| 4yzgA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.55 | 50.0 | 3.90e-01 | 100.0% | 88.4% |
| 1a3gA01 | 3.30.470.10 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain | 0.53 | 30.0 | 3.06e-01 | 95.6% | 55.6% |
| 2x49A01 | 3.40.30.60 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › FHIPEP family, domain 1 | 0.52 | 30.0 | 3.53e-01 | 86.1% | 80.2% |
| 2irmA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.52 | 48.0 | 3.57e-01 | 100.0% | 65.5% |
| 2i0oA00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.51 | 46.0 | 3.65e-01 | 100.0% | 69.0% |
| 1e2tA02 | 3.30.1120.150 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.50 | 31.0 | 3.93e-01 | 89.8% | 100.0% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3942872 | 210.1.3.3 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 | 0.96 | 75.0 | 5.86e-01 | 80.3% | 62.4% |
| 4944048 | 210.1.3.3 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 | 0.91 | 71.0 | 5.65e-01 | 80.3% | 67.8% |
| 5075402 | 210.1.3.3 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 | 0.91 | 73.0 | 5.49e-01 | 82.5% | 65.3% |
| 5046400 | 210.1.3.3 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 | 0.91 | 72.0 | 5.53e-01 | 81.0% | 65.3% |
| 4100017 | 210.1.3.3 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 | 0.86 | 70.0 | 5.36e-01 | 83.9% | 60.7% |
| 3965213 | 210.1.3.3 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 | 0.83 | 81.0 | 6.15e-01 | 100.0% | 65.1% |
| 4944470 | 210.1.3.3 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 | 0.80 | 63.0 | 5.05e-01 | 81.8% | 55.5% |
| 5054721 | 210.1.3.3 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 | 0.80 | 65.0 | 5.21e-01 | 83.9% | 81.7% |
| 4948108 | 210.1.3.3 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 | 0.79 | 64.0 | 5.47e-01 | 83.2% | 83.3% |
| 5070626 | 210.1.3.3 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 | 0.78 | 62.0 | 4.88e-01 | 81.8% | 56.9% |
| 5033976 | 210.1.3.5 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 | 0.77 | 66.0 | 5.33e-01 | 89.8% | 61.7% |
| 3961853 | 210.1.3.3 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 | 0.73 | 59.0 | 4.84e-01 | 83.2% | 53.5% |
| 3271482 | 210.1.3.5 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 | 0.70 | 56.0 | 4.61e-01 | 83.9% | 65.0% |
| 5041669 | 210.1.3.0 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases | 0.64 | 51.0 | 4.37e-01 | 82.5% | 58.5% |
| 3475267 | 77.2.1.1 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN | 0.56 | 27.0 | 3.13e-01 | 81.8% | 61.2% |
| 3690594 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.56 | 45.0 | 3.01e-01 | 85.4% | 30.8% |
| 3507558 | 210.2.1.1 ↗ | a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C | 0.53 | 50.0 | 3.74e-01 | 100.0% | 83.8% |
| 3979646 | 210.1.2.5 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Peptidase_C69 | 0.52 | 46.0 | 3.25e-01 | 100.0% | 43.0% |
| 4074976 | 210.1.2.5 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Peptidase_C69 | 0.52 | 46.0 | 3.26e-01 | 100.0% | 36.5% |
| 4380054 | 210.1.2.5 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Peptidase_C69 | 0.50 | 45.0 | 3.14e-01 | 100.0% | 36.7% |
| 3230371 | 3180.1.1.0 ↗ | a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related | 0.50 | 33.0 | 3.74e-01 | 98.5% | 84.5% |
D3
medium
residues 185-233
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13230.12 best | GATase_4 | 53.9 | 1.90e-14 | 100.0% | 17.2% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5bpxA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.56 | 44.0 | 3.33e-01 | 100.0% | 75.2% |
| 3cu7A10 | 2.60.120.1540 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 43.0 | 3.53e-01 | 100.0% | 55.7% |
| 3ebrA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 43.0 | 3.23e-01 | 100.0% | 60.9% |
| 2h5eA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 42.0 | 3.02e-01 | 89.8% | 54.3% |
| 4msvA01 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 45.0 | 3.38e-01 | 100.0% | 85.4% |
| 2apoB00 | 2.20.28.40 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › H/ACA ribonucleoprotein complex, subunit Nop10 | 0.52 | 31.0 | 3.05e-01 | 77.6% | 52.7% |
| 4oifA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.52 | 36.0 | 3.51e-01 | 91.8% | 62.9% |
| 4gipD03 | 2.60.40.1690 | Mainly Beta › Sandwich › Immunoglobulin-like › Head and neck region of the ectodomain of NDV fusion glycoprotein | 0.52 | 42.0 | 4.08e-01 | 100.0% | 89.5% |
| 4gklA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.51 | 40.0 | 3.44e-01 | 93.9% | 96.6% |
| 1r6xA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.51 | 32.0 | 2.19e-01 | 81.6% | 14.6% |
| 1mi8A00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.50 | 39.0 | 3.02e-01 | 98.0% | 98.6% |
| 4ohvA03 | 2.40.30.330 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Pre-mRNA cleavage complex subunit Clp1, C-terminal domain | 0.50 | 39.0 | 3.33e-01 | 91.8% | 71.9% |
| 3ttyA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.50 | 35.0 | 3.36e-01 | 91.8% | 62.9% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3942872 | 210.1.3.3 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 | 1.00 | 95.0 | 5.74e-01 | 100.0% | 19.2% |
| 3965213 | 210.1.3.3 ↗ | a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 | 1.00 | 95.0 | 5.67e-01 | 100.0% | 17.8% |
| 5010839 | 2002.1.1.45 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_31_2nd | 0.57 | 43.0 | 2.47e-01 | 89.8% | 55.5% |
| 3423336 | 376.1.3.9 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD_2 | 0.53 | 33.0 | 3.27e-01 | 73.5% | 56.4% |
| 1756924 | 12.1.1.50 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Glyco_hydro_31_3rd | 0.52 | 35.0 | 3.09e-01 | 77.6% | 60.9% |