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CAKLQF020000028.1__CAH1093339.1__SAMEA5780031_03694__00041

Bact-Vir

CAKLQF020000028.1__CAH1093339.1__SAMEA5780031_03694__00041

Identity

Kingdom:
phage

Quality

89.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-88
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2w42B02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.69 61.0 4.35e-01 100.0% 71.9%
5nblA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.68 60.0 4.68e-01 97.3% 91.7%
5b7yA00 3.20.20.150 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes 0.68 59.0 4.09e-01 100.0% 37.5%
1amiA02 3.40.1060.10 Alpha Beta › 3-Layer(aba) Sandwich › Aconitase; Domain 2 › Aconitase, Domain 2 0.67 58.0 5.18e-01 100.0% 87.6%
7ch9L01 3.30.750.24 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain 0.67 55.0 5.34e-01 94.7% 89.7%
7d06C01 3.30.750.24 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain 0.65 52.0 5.11e-01 93.3% 94.0%
1t6t200 3.40.1360.10 Alpha Beta › 3-Layer(aba) Sandwich › Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 › 0.64 49.0 4.40e-01 84.0% 79.1%
5l3qA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 55.0 4.04e-01 96.0% 35.9%
2ziuB01 3.40.50.10130 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.64 48.0 3.91e-01 81.3% 45.6%
2gb7D00 3.40.91.80 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.64 53.0 3.64e-01 100.0% 24.7%
2im5A00 3.20.140.10 Alpha Beta › Alpha-Beta Barrel › nicotinate phosphoribosyltransferase › nicotinate phosphoribosyltransferase 0.64 55.0 3.55e-01 100.0% 21.3%
3flhB00 3.40.250.10 Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain 0.64 50.0 4.27e-01 85.3% 62.8%
7txuA02 3.90.190.20 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Mur ligase, C-terminal domain 0.63 54.0 4.54e-01 100.0% 67.9%
3gk5A00 3.40.250.10 Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain 0.63 49.0 4.51e-01 85.3% 73.0%
2eg3A02 3.40.250.10 Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain 0.63 49.0 4.35e-01 85.3% 79.3%
4ktwA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.63 56.0 4.39e-01 100.0% 96.2%
3fojA00 3.40.250.10 Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain 0.63 49.0 4.50e-01 85.3% 73.7%
1y7oB00 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.62 53.0 4.16e-01 100.0% 84.8%
3h1qA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.62 55.0 4.40e-01 100.0% 80.4%
1yt8A03 3.40.250.10 Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain 0.62 46.0 4.35e-01 80.0% 78.0%
4b3hB01 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.62 53.0 3.53e-01 100.0% 54.8%
4jcqA00 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.62 53.0 4.18e-01 100.0% 90.0%
5w16A02 3.40.50.1860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.62 45.0 4.10e-01 78.7% 85.3%
3icsA03 3.40.250.10 Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain 0.61 47.0 4.32e-01 85.3% 71.6%
2dfjA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.60 51.0 3.61e-01 100.0% 39.0%
3hn7A03 3.90.190.20 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Mur ligase, C-terminal domain 0.59 50.0 4.16e-01 100.0% 62.6%
1g5bB00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.59 50.0 3.71e-01 100.0% 49.3%
2yk4A01 3.30.370.20 Alpha Beta › 2-Layer Sandwich › Barnase; Chain D › 0.59 43.0 4.21e-01 82.7% 72.0%
3vu9B00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 49.0 3.79e-01 100.0% 81.7%
4wd3A01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 48.0 4.15e-01 93.3% 92.5%
7zvjA01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.57 49.0 3.49e-01 100.0% 36.9%
7zllA01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.57 49.0 3.39e-01 100.0% 33.2%
3zy2A02 3.40.50.11350 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 50.0 3.87e-01 100.0% 60.8%
4wqmA03 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.56 46.0 3.97e-01 100.0% 54.9%
1a97B00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.55 47.0 3.87e-01 100.0% 64.2%
1wv9A00 3.40.250.10 Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain 0.55 46.0 4.43e-01 100.0% 81.6%
2ywrA00 3.40.50.170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain 0.55 46.0 3.46e-01 100.0% 79.1%
3g5jA00 3.40.250.10 Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain 0.55 48.0 4.04e-01 100.0% 83.1%
4xfjB01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.54 46.0 3.64e-01 100.0% 84.4%
2bo4A01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.54 46.0 3.52e-01 100.0% 43.8%
8inpA01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.54 44.0 3.27e-01 100.0% 87.6%
2fcjB00 3.40.1360.10 Alpha Beta › 3-Layer(aba) Sandwich › Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 › 0.54 46.0 4.05e-01 100.0% 79.7%
1chdA00 3.40.50.180 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Methylesterase CheB, C-terminal domain 0.53 44.0 3.44e-01 100.0% 87.4%
4nzpA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.53 46.0 3.87e-01 100.0% 55.1%
2r6hA02 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.53 44.0 3.95e-01 100.0% 69.5%
4rctA01 3.30.870.10 Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A 0.52 42.0 3.31e-01 94.7% 74.6%
4dapA02 3.40.1350.60 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.52 42.0 3.50e-01 96.0% 65.8%
1lqtA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 42.0 3.14e-01 93.3% 85.3%
3hgmA00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.52 44.0 3.65e-01 100.0% 72.8%
1omzB00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.51 42.0 3.03e-01 100.0% 28.6%
1rzuA02 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.51 44.0 3.28e-01 100.0% 65.6%
3loqA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.50 42.0 3.63e-01 100.0% 59.7%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4148795 2495.1.1.1 a/b three-layered sandwiches › Cell-division inhibitor MinC, N-terminal domain › Cell-division inhibitor MinC, N-terminal domain › Cell-division inhibitor MinC, N-terminal domain › MinC_N 0.90 83.0 7.34e-01 100.0% 79.0%
4058096 2495.1.1.1 a/b three-layered sandwiches › Cell-division inhibitor MinC, N-terminal domain › Cell-division inhibitor MinC, N-terminal domain › Cell-division inhibitor MinC, N-terminal domain › MinC_N 0.88 81.0 7.57e-01 100.0% 90.0%
3387997 2007.2.5.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase › Rhodanese 0.69 54.0 4.52e-01 85.3% 82.3%
5054866 3979.1.1.0 a+b four layers › Mre11 nuclease C-terminal domain › Mre11 nuclease C-terminal domain › Mre11 nuclease C-terminal domain 0.65 48.0 5.07e-01 81.3% 100.0%
4931078 3979.1.1.0 a+b four layers › Mre11 nuclease C-terminal domain › Mre11 nuclease C-terminal domain › Mre11 nuclease C-terminal domain 0.65 50.0 4.86e-01 84.0% 87.1%
3963469 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.65 51.0 3.95e-01 100.0% 37.7%
162257 2002.4.1.1 a/b barrels › TIM beta/alpha-barrel › Nicotinate/Quinolinate PRTase C-terminal domain-like › Nicotinate/Quinolinate PRTase C-terminal domain-like › NAPRTase 0.64 55.0 3.89e-01 100.0% 32.7%
958338 2007.2.5.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase › Rhodanese 0.63 49.0 4.54e-01 85.3% 90.7%
4961221 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.62 55.0 4.85e-01 100.0% 67.3%
3282240 2007.2.5.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase › Rhodanese 0.62 48.0 4.44e-01 85.3% 73.0%
4947549 3979.1.1.0 a+b four layers › Mre11 nuclease C-terminal domain › Mre11 nuclease C-terminal domain › Mre11 nuclease C-terminal domain 0.62 48.0 4.89e-01 88.0% 97.3%
3930714 2496.1.1.0 a/b three-layered sandwiches › SpoIIaa-like › SpoIIaa-like › SpoIIaa-like 0.61 51.0 5.02e-01 100.0% 95.3%
1149287 2007.2.5.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase › Rhodanese 0.61 47.0 4.28e-01 85.3% 68.9%
4970825 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.60 47.0 3.86e-01 100.0% 44.7%
5056383 7512.1.1.30 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_4 0.60 51.0 3.94e-01 100.0% 98.9%
2983287 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.59 47.0 3.99e-01 100.0% 50.4%
5031036 3979.1.1.0 a+b four layers › Mre11 nuclease C-terminal domain › Mre11 nuclease C-terminal domain › Mre11 nuclease C-terminal domain 0.59 45.0 4.08e-01 85.3% 60.9%
4307149 2484.1.1.174 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.59 44.0 3.78e-01 81.3% 75.2%
5032165 3979.1.1.0 a+b four layers › Mre11 nuclease C-terminal domain › Mre11 nuclease C-terminal domain › Mre11 nuclease C-terminal domain 0.59 44.0 4.47e-01 84.0% 94.7%
3420098 2484.1.1.9 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.59 51.0 3.74e-01 100.0% 45.1%
3583278 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.58 48.0 3.16e-01 96.0% 51.4%
4982871 7542.1.2.3 a/b three-layered sandwiches › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain › Aconitase iron-sulfur domain II › AcnX_2nd 0.58 44.0 4.34e-01 100.0% 76.5%
3964553 2484.1.1.66 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 0.58 51.0 4.19e-01 100.0% 65.0%
5060275 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.58 50.0 4.28e-01 100.0% 64.8%
3636997 7571.1.1.1 a/b three-layered sandwiches › Formyltransferase › Formyltransferase › Formyltransferase › Formyl_trans_N 0.58 49.0 3.57e-01 100.0% 85.2%
4131977 2002.1.1.66 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › DHquinase_I 0.57 48.0 3.60e-01 100.0% 49.1%
4996370 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.57 49.0 3.57e-01 100.0% 34.4%
5080539 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.56 45.0 3.68e-01 100.0% 45.1%
3242105 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.56 47.0 3.59e-01 100.0% 53.5%
5044534 7512.1.1.3 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.54 40.0 3.08e-01 82.7% 32.0%
4939811 3979.1.1.0 a+b four layers › Mre11 nuclease C-terminal domain › Mre11 nuclease C-terminal domain › Mre11 nuclease C-terminal domain 0.54 40.0 4.14e-01 84.0% 98.6%
5077869 2008.1.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.53 42.0 3.59e-01 100.0% 51.1%
3945413 2008.1.1.16 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Mrr_cat 0.53 44.0 3.49e-01 97.3% 48.2%
5027831 7512.1.1.3 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.51 38.0 2.95e-01 82.7% 32.8%
4958174 7512.1.1.3 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.51 42.0 3.25e-01 100.0% 61.0%
4999411 7512.1.1.3 a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glycos_transf_1 0.50 43.0 3.39e-01 100.0% 73.7%
384421 2005.1.1.3 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.50 42.0 3.60e-01 100.0% 57.9%
D2 high residues 95-106_127-237
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03775.23 best MinC_C 95.0 3.50e-27 83.7% 94.1%