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CAKLQF020000029.1__CAH1093663.1__SAMEA5780031_03714__00007

Bact-Vir

CAKLQF020000029.1__CAH1093663.1__SAMEA5780031_03714__00007

Identity

Kingdom:
phage

Quality

84.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 52-131
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01025.25 best GrpE 55.6 7.30e-15 100.0% 46.7%
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1y1uA01 1.20.1050.20 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › STAT transcription factor, all-alpha domain 0.82 74.0 5.47e-01 98.8% 42.1%
1rq0A01 6.10.140.160 Special › Helix non-globular › Helix Hairpins › 0.81 59.0 5.89e-01 76.2% 75.9%
1txqB00 1.20.5.1430 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.81 57.0 6.24e-01 76.2% 92.2%
4ke2A00 6.10.140.1860 Special › Helix non-globular › Helix Hairpins › 0.79 73.0 5.35e-01 100.0% 59.7%
5tkyA05 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.79 58.0 5.61e-01 76.2% 74.7%
2xubA05 6.10.140.1450 Special › Helix non-globular › Helix Hairpins › 0.77 60.0 5.59e-01 81.2% 77.1%
4nqiD00 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.77 67.0 4.80e-01 96.2% 56.0%
2fsfB04 1.10.3060.10 Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA 0.76 55.0 3.93e-01 91.3% 28.3%
2rdcA00 1.10.287.800 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › protein ne1242 0.74 54.0 4.53e-01 77.5% 45.9%
2qupA00 1.20.120.490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hypothetical protein TM1646-like domain 0.71 51.0 4.53e-01 76.2% 51.3%
1sg2A00 3.30.910.20 Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › Skp domain 0.67 56.0 4.56e-01 88.7% 58.2%
2yf4F00 1.10.3420.10 Mainly Alpha › Orthogonal Bundle › putative ntp pyrophosphohydrolase like fold › putative ntp pyrophosphohydrolase like domain 0.67 45.0 3.76e-01 73.8% 39.2%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3536875 4177.1.1.1 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › FCH 0.90 84.0 5.53e-01 100.0% 28.8%
3595103 3860.1.1.0 alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm 0.88 60.0 4.90e-01 70.0% 44.4%
3337008 192.2.1.60 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › KIF21A_4th 0.87 72.0 5.77e-01 86.3% 52.1%
3318812 192.8.1.248 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › KIF21A_4th 0.86 71.0 5.61e-01 86.3% 48.7%
3810801 632.22.1.139 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › KIF21A_4th 0.86 71.0 5.57e-01 86.3% 48.7%
3554294 603.2.1.1 alpha bundles › STAT-like › STAT › STAT › STAT_alpha 0.85 78.0 5.70e-01 100.0% 42.5%
4977416 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.85 78.0 5.45e-01 100.0% 33.9%
3560229 3291.1.1.230 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › TBCA_PH 0.84 77.0 6.27e-01 100.0% 56.4%
3780286 244.1.1.6 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase 0.83 76.0 4.47e-01 98.8% 17.7%
5028533 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.81 73.0 6.18e-01 100.0% 60.8%
3164951 5094.1.1.1 a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like › OmpH 0.79 62.0 4.80e-01 83.7% 40.0%
4174058 3922.1.1.154 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › GrpE 0.79 72.0 6.42e-01 100.0% 77.3%
5058780 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.79 59.0 5.35e-01 87.5% 60.0%
4159863 3939.1.1.145 alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › GrpE 0.78 70.0 6.61e-01 98.8% 84.2%
4005034 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.78 70.0 5.42e-01 97.5% 47.1%
3412574 3291.1.1.82 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › ING 0.77 70.0 5.92e-01 100.0% 63.8%
3481083 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.77 68.0 4.79e-01 100.0% 67.3%
3245048 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.76 57.0 4.72e-01 80.0% 46.4%
3181110 5086.1.1.110 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HisKA 0.75 61.0 5.82e-01 90.0% 75.8%
None 0.75 65.0 6.13e-01 95.0% 82.1%
None 0.72 62.0 4.75e-01 100.0% 40.5%
4080313 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.70 62.0 5.19e-01 100.0% 99.3%
4974229 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.70 62.0 4.85e-01 100.0% 48.6%
3222805 5054.1.1.8 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.70 56.0 3.86e-01 86.3% 28.9%
1139567 605.1.1.1 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA 0.58 49.0 4.71e-01 100.0% 84.5%
D2 medium residues 132-184
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01025.25 best GrpE 51.8 1.10e-13 100.0% 29.7%
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3a6mA02 2.30.22.10 Mainly Beta › Roll › Nucleotide Exchange Factor Grpe; Chain A, domain 2 › Head domain of nucleotide exchange factor GrpE 0.90 83.0 8.11e-01 100.0% 93.0%
1dkgB02 2.30.22.10 Mainly Beta › Roll › Nucleotide Exchange Factor Grpe; Chain A, domain 2 › Head domain of nucleotide exchange factor GrpE 0.89 82.0 7.98e-01 100.0% 98.2%
5tu7B01 2.20.230.10 Mainly Beta › Single Sheet › Resuscitation-promoting factor rpfb fold › Resuscitation-promoting factor rpfb. 0.52 41.0 3.93e-01 100.0% 75.0%
ECOD (46)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4300671 148.1.3.209 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › GrpE 0.96 91.0 6.81e-01 100.0% 48.7%
4967038 706.1.1.1 beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE 0.93 87.0 8.26e-01 100.0% 91.7%
4532990 706.1.1.1 beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE 0.92 86.0 8.20e-01 100.0% 95.0%
4662976 706.1.1.0 beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE 0.92 85.0 8.42e-01 98.1% 98.2%
4046571 706.1.1.1 beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE 0.92 86.0 8.22e-01 100.0% 93.3%
5047913 706.1.1.1 beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE 0.92 86.0 8.23e-01 100.0% 93.3%
4662808 706.1.1.1 beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE 0.92 87.0 7.97e-01 100.0% 86.2%
4402754 706.1.1.1 beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE 0.92 86.0 8.23e-01 100.0% 94.9%
4976007 706.1.1.1 beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE 0.92 86.0 7.32e-01 100.0% 70.0%
4328747 148.1.3.209 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › GrpE 0.92 86.0 6.46e-01 100.0% 49.1%
4428959 3939.1.1.145 alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › GrpE 0.92 85.0 6.13e-01 100.0% 41.5%
3610994 706.1.1.1 beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE 0.92 85.0 8.15e-01 100.0% 96.7%
4644405 706.1.1.1 beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE 0.92 84.0 8.28e-01 98.1% 100.0%
4503625 706.1.1.1 beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE 0.91 86.0 6.31e-01 100.0% 45.5%
4445928 706.1.1.1 beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE 0.91 85.0 5.94e-01 100.0% 37.3%
4502174 605.1.1.108 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › GrpE 0.91 86.0 6.43e-01 100.0% 48.7%
3540230 706.1.1.1 beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE 0.91 85.0 8.12e-01 100.0% 95.0%
4487102 706.1.1.1 beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE 0.91 82.0 6.24e-01 96.2% 49.1%
4606810 706.1.1.1 beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE 0.91 85.0 6.02e-01 100.0% 40.0%
3205739 706.1.1.1 beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE 0.91 82.0 7.79e-01 96.2% 100.0%
3634825 706.1.1.1 beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE 0.91 83.0 7.78e-01 98.1% 96.8%
4139514 605.1.1.108 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › GrpE 0.91 82.0 5.70e-01 96.2% 36.7%
3643817 706.1.1.1 beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE 0.91 84.0 8.00e-01 100.0% 95.0%
4128211 706.1.1.1 beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE 0.91 84.0 8.11e-01 100.0% 96.6%
4094227 706.1.1.1 beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE 0.90 82.0 7.98e-01 98.1% 96.6%
4484233 706.1.1.1 beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE 0.90 80.0 7.97e-01 96.2% 100.0%
4053915 706.1.1.1 beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE 0.89 83.0 8.00e-01 100.0% 96.6%
5084043 706.1.1.1 beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE 0.89 80.0 7.92e-01 96.2% 98.2%
3596541 706.1.1.0 beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE 0.89 81.0 7.79e-01 100.0% 96.7%
4945386 706.1.1.0 beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE 0.89 82.0 7.84e-01 100.0% 95.0%
4124894 706.1.1.1 beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE 0.88 79.0 7.80e-01 96.2% 96.4%
4083033 706.1.1.1 beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE 0.87 80.0 7.88e-01 98.1% 100.0%
4203603 706.1.1.1 beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE 0.87 79.0 7.68e-01 100.0% 98.3%
5061516 706.1.1.1 beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE 0.87 79.0 7.87e-01 98.1% 100.0%
4043139 706.1.1.1 beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE 0.87 77.0 7.72e-01 96.2% 100.0%
3961517 706.1.1.1 beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE 0.84 78.0 7.45e-01 100.0% 95.0%
3991914 706.1.1.1 beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE 0.84 78.0 7.46e-01 100.0% 95.0%
4360491 148.1.3.209 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › GrpE 0.83 77.0 5.46e-01 100.0% 39.3%
5035485 706.1.1.1 beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › GrpE 0.83 76.0 5.73e-01 100.0% 48.3%
3223270 706.1.1.2 beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › MIEAP 0.78 66.0 4.36e-01 92.5% 24.5%
3841269 706.1.1.2 beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › MIEAP 0.76 67.0 6.67e-01 100.0% 98.2%
3404501 706.1.1.2 beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › MIEAP 0.75 64.0 4.26e-01 94.3% 25.6%
3833315 706.1.1.0 beta complex topology › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE › Head domain of nucleotide exchange factor GrpE 0.74 65.0 6.48e-01 100.0% 94.5%
4086298 294.2.1.1 a+b two layers › CI-2 family of serine protease inhibitors-like › Penicillin-binding protein 2x (pbp-2x)-C › Penicillin-binding protein 2x (pbp-2x)-C › PASTA 0.64 54.0 5.12e-01 100.0% 96.9%
4231180 294.2.1.1 a+b two layers › CI-2 family of serine protease inhibitors-like › Penicillin-binding protein 2x (pbp-2x)-C › Penicillin-binding protein 2x (pbp-2x)-C › PASTA 0.61 51.0 4.85e-01 100.0% 95.4%
2136476 294.2.1.1 a+b two layers › CI-2 family of serine protease inhibitors-like › Penicillin-binding protein 2x (pbp-2x)-C › Penicillin-binding protein 2x (pbp-2x)-C › PASTA 0.60 49.0 4.55e-01 100.0% 93.3%