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CAKLQF020000029.1__CAH1093673.1__SAMEA5780031_03719__00012
Bact-VirCAKLQF020000029.1__CAH1093673.1__SAMEA5780031_03719__00012
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 255-347
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13406.12 best | SLT_2 | 62.7 | 4.90e-17 | 96.8% | 29.1% |
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2dl5A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.51 | 29.0 | 3.17e-01 | 80.6% | 66.7% |
ECOD (3)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3966371 | 235.1.1.0 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like | 0.94 | 88.0 | 5.91e-01 | 100.0% | 30.3% |
| 3469045 | 376.1.2.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain | 0.56 | 37.0 | 4.05e-01 | 79.6% | 85.3% |
| 4949985 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.50 | 27.0 | 2.86e-01 | 86.0% | 56.2% |
D2
high
residues 365-429
Domain cluster:
rep: MW388005.1__QQO39020.1__X__00046__D8-66
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01471.24 best | PG_binding_1 | 51.4 | 1.40e-13 | 86.2% | 94.7% |
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4c2dA02 | 1.10.101.10 | Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD | 0.85 | 77.0 | 7.05e-01 | 100.0% | 76.5% |
| 1eakA01 | 1.10.101.10 | Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD | 0.85 | 72.0 | 7.34e-01 | 96.9% | 93.7% |
| 1lbuA01 | 1.10.101.10 | Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD | 0.82 | 72.0 | 6.60e-01 | 96.9% | 82.1% |
| 4bolA02 | 1.10.101.10 | Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD | 0.80 | 70.0 | 6.52e-01 | 98.5% | 77.5% |
| 4g54A02 | 1.10.101.10 | Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD | 0.80 | 69.0 | 6.69e-01 | 93.8% | 84.7% |
| 1ck7A01 | 3.40.390.10 | Alpha Beta › 3-Layer(aba) Sandwich › Collagenase (Catalytic Domain) › Collagenase (Catalytic Domain) | 0.79 | 71.0 | 4.71e-01 | 96.9% | 77.0% |
| 3bkhA01 | 1.10.101.10 | Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD | 0.79 | 70.0 | 6.38e-01 | 98.5% | 75.6% |
| 7aj9A01 | 1.10.101.10 | Mainly Alpha › Orthogonal Bundle › Muramoyl-pentapeptide Carboxypeptidase; domain 1 › PGBD-like superfamily/PGBD | 0.75 | 67.0 | 6.65e-01 | 100.0% | 100.0% |
| 2nr7A00 | 1.20.141.10 | Mainly Alpha › Up-down Bundle › Chitosanase, subunit A; domain 1 › Chitosanase, subunit A, domain 1 | 0.66 | 54.0 | 3.82e-01 | 98.5% | 29.9% |
| 3t4rA00 | 1.20.120.1590 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.62 | 42.0 | 4.13e-01 | 95.4% | 63.9% |
| 4bvxA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.60 | 43.0 | 3.74e-01 | 78.5% | 88.6% |
| 1wp9B03 | 1.20.1320.20 | Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › hef helicase domain | 0.59 | 45.0 | 3.65e-01 | 83.1% | 73.8% |
| 4gmqA00 | 1.10.8.840 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ribosome-associated complex head domain | 0.57 | 42.0 | 3.77e-01 | 98.5% | 55.4% |
| 2wzoA01 | 3.30.160.360 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.56 | 39.0 | 3.13e-01 | 73.8% | 71.4% |
| 1fc6A01 | 3.30.750.44 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › | 0.56 | 40.0 | 3.54e-01 | 76.9% | 98.0% |
| 1gvnD00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 41.0 | 2.83e-01 | 84.6% | 73.0% |
| 3nbiA01 | 1.10.8.1020 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain | 0.53 | 39.0 | 4.13e-01 | 93.8% | 89.7% |
| 1zp2A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.52 | 39.0 | 3.33e-01 | 81.5% | 73.2% |
| 3rmiA00 | 1.20.59.10 | Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase | 0.51 | 34.0 | 2.89e-01 | 86.2% | 41.9% |
| 4akgA06 | 1.10.8.710 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Dynein motor, AAA1 domain, small subdomain | 0.51 | 35.0 | 3.07e-01 | 73.8% | 89.7% |
ECOD (58)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3060287 | 144.1.1.0 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like | 0.93 | 82.0 | 7.78e-01 | 93.8% | 80.0% |
| 1877329 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.90 | 75.0 | 7.08e-01 | 89.2% | 76.3% |
| 4055540 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.89 | 79.0 | 7.72e-01 | 98.5% | 88.4% |
| 4312892 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.88 | 74.0 | 7.66e-01 | 92.3% | 96.7% |
| 4117418 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.87 | 75.0 | 7.78e-01 | 96.9% | 100.0% |
| 4032027 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.86 | 76.0 | 6.95e-01 | 96.9% | 74.1% |
| 1934000 | 144.1.1.2 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1,PG_binding_5 | 0.86 | 76.0 | 5.64e-01 | 100.0% | 39.9% |
| 1904136 | 144.1.1.0 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like | 0.86 | 75.0 | 7.12e-01 | 93.8% | 84.0% |
| 4380775 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.86 | 77.0 | 5.29e-01 | 100.0% | 31.5% |
| 1165079 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.85 | 77.0 | 6.72e-01 | 100.0% | 67.7% |
| 3291401 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.85 | 72.0 | 6.57e-01 | 92.3% | 90.6% |
| 3957237 | 144.1.1.0 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like | 0.84 | 71.0 | 6.73e-01 | 90.8% | 92.0% |
| 4218606 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.84 | 72.0 | 6.64e-01 | 93.8% | 74.7% |
| 4600634 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.84 | 70.0 | 7.28e-01 | 89.2% | 100.0% |
| 3356981 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.84 | 76.0 | 7.05e-01 | 100.0% | 85.0% |
| 3788528 | 144.1.1.0 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like | 0.84 | 76.0 | 5.66e-01 | 100.0% | 47.7% |
| 4473649 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.83 | 70.0 | 6.38e-01 | 90.8% | 76.5% |
| 3274761 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.83 | 75.0 | 5.50e-01 | 100.0% | 47.3% |
| 3959835 | 144.1.1.0 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like | 0.83 | 67.0 | 6.60e-01 | 87.7% | 81.4% |
| 3299326 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.83 | 74.0 | 7.45e-01 | 98.5% | 96.9% |
| 5019285 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.83 | 75.0 | 6.57e-01 | 100.0% | 68.4% |
| 3955223 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.82 | 75.0 | 6.94e-01 | 100.0% | 91.3% |
| 3539881 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.82 | 74.0 | 7.04e-01 | 98.5% | 84.0% |
| 3275963 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.81 | 71.0 | 6.38e-01 | 96.9% | 72.2% |
| 2859574 | 144.1.1.0 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like | 0.81 | 67.0 | 6.51e-01 | 92.3% | 81.7% |
| 4945529 | 144.1.1.0 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like | 0.81 | 67.0 | 6.74e-01 | 89.2% | 95.4% |
| 3332533 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.81 | 72.0 | 6.15e-01 | 98.5% | 63.0% |
| 3631772 | 144.1.1.0 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like | 0.81 | 73.0 | 5.18e-01 | 98.5% | 35.6% |
| 3247155 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.81 | 70.0 | 7.07e-01 | 98.5% | 93.8% |
| 3302194 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.81 | 72.0 | 6.31e-01 | 98.5% | 68.4% |
| 3221065 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.80 | 72.0 | 6.81e-01 | 96.9% | 96.0% |
| 3930763 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.80 | 73.0 | 6.90e-01 | 98.5% | 89.3% |
| 3319740 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.80 | 71.0 | 6.47e-01 | 98.5% | 75.3% |
| 3765966 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.80 | 73.0 | 6.61e-01 | 98.5% | 75.3% |
| 3263339 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.79 | 70.0 | 6.73e-01 | 98.5% | 85.3% |
| 3395 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.79 | 71.0 | 6.51e-01 | 98.5% | 80.7% |
| 3772718 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.79 | 72.0 | 6.54e-01 | 98.5% | 78.8% |
| 3222017 | 144.1.1.0 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like | 0.79 | 72.0 | 6.35e-01 | 98.5% | 76.7% |
| 3933825 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.79 | 70.0 | 6.67e-01 | 96.9% | 90.7% |
| 3893524 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.78 | 70.0 | 6.83e-01 | 95.4% | 91.4% |
| 3994858 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.78 | 71.0 | 6.59e-01 | 98.5% | 95.0% |
| 4010440 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.78 | 67.0 | 6.43e-01 | 95.4% | 84.0% |
| 3621525 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.77 | 70.0 | 6.64e-01 | 96.9% | 98.7% |
| 4173379 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.77 | 68.0 | 6.34e-01 | 98.5% | 81.2% |
| 224034 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.77 | 70.0 | 6.46e-01 | 100.0% | 82.7% |
| 3772398 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.77 | 70.0 | 6.46e-01 | 98.5% | 82.5% |
| 4262263 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.76 | 68.0 | 6.46e-01 | 98.5% | 84.0% |
| 2819638 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.76 | 68.0 | 5.59e-01 | 100.0% | 57.8% |
| 4857662 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.75 | 66.0 | 6.41e-01 | 98.5% | 87.3% |
| 4962391 | 144.1.1.11 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_2 | 0.75 | 62.0 | 5.56e-01 | 90.8% | 74.4% |
| 3590520 | 144.1.1.1 ↗ | alpha arrays › PGBD-like › PGBD-like › PGBD-like › PG_binding_1 | 0.74 | 62.0 | 5.79e-01 | 92.3% | 78.8% |
| 2756454 | 235.1.1.13 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glyco_hydro_108,PG_binding_3 | 0.65 | 54.0 | 3.92e-01 | 96.9% | 33.9% |
| 5045111 | 3930.1.1.3 ↗ | alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase › RNA_helicase_helical | 0.59 | 44.0 | 3.57e-01 | 83.1% | 74.8% |
| 3349141 | 375.1.1.182 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7086 | 0.57 | 49.0 | 3.82e-01 | 95.4% | 59.3% |
| 5066065 | 3930.1.1.3 ↗ | alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase › RNA_helicase_helical | 0.57 | 43.0 | 3.57e-01 | 84.6% | 77.6% |
| 3369564 | 130.1.1.39 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › DUF7086 | 0.56 | 47.0 | 3.73e-01 | 95.4% | 59.3% |
| 3436085 | 101.1.1.65 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 | 0.54 | 40.0 | 3.57e-01 | 84.6% | 54.0% |
| 3597463 | 650.1.1.0 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain | 0.51 | 39.0 | 3.64e-01 | 83.1% | 75.0% |
D3
medium
residues 60-246
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13406.12 best | SLT_2 | 252.6 | 6.70e-75 | 100.0% | 63.7% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ltmA02 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.94 | 36.0 | 3.83e-01 | 81.3% | 41.6% |
| 1qusA01 | 1.10.8.350 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Bacterial muramidase | 0.85 | 45.0 | 5.80e-01 | 84.5% | 85.8% |
| 4hjzA00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.75 | 42.0 | 4.32e-01 | 80.7% | 56.8% |
| 3fi7A01 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.75 | 32.0 | 3.86e-01 | 74.3% | 58.5% |
| 153lA00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.71 | 42.0 | 4.24e-01 | 80.2% | 58.4% |
| 4qdnA00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.70 | 31.0 | 3.90e-01 | 72.7% | 66.1% |
| 4kt3A00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.63 | 33.0 | 3.83e-01 | 75.4% | 67.4% |
| 1li5A02 | 1.20.120.640 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases | 0.50 | 19.0 | 2.72e-01 | 70.1% | 71.3% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3966371 | 235.1.1.0 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like | 0.95 | 93.0 | 7.62e-01 | 100.0% | 62.3% |
| 3966367 | 235.1.1.0 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like | 0.94 | 91.0 | 7.46e-01 | 100.0% | 62.3% |
| 2138980 | 235.1.1.19 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT_2 | 0.93 | 91.0 | 7.44e-01 | 100.0% | 62.5% |
| 7426 | 235.1.1.19 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT_2 | 0.91 | 88.0 | 7.15e-01 | 100.0% | 60.3% |
| 4530587 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.73 | 43.0 | 4.35e-01 | 79.7% | 58.4% |
| 4258903 | 235.1.1.9 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT | 0.72 | 39.0 | 4.20e-01 | 74.9% | 60.0% |
| 4007762 | 235.1.1.10 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Glucosaminidase | 0.56 | 34.0 | 3.59e-01 | 74.9% | 65.3% |