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CAKLQF020000031.1__CAH1094323.1__SAMEA5780031_03838__00036
Bact-VirCAKLQF020000031.1__CAH1094323.1__SAMEA5780031_03838__00036
Identity
- Kingdom:
- phage
Quality
77.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 56-128
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01476.27 best | LysM | 41.2 | 1.80e-10 | 64.4% | 95.3% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2xzmG00 | 1.10.455.10 | Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S7 › Ribosomal protein S7/S5 | 0.66 | 52.0 | 3.90e-01 | 87.7% | 80.7% |
| 2gu1A01 | 3.10.450.350 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.63 | 55.0 | 5.26e-01 | 100.0% | 93.2% |
| 3w0fA02 | 1.10.8.50 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.55 | 39.0 | 3.31e-01 | 76.7% | 47.1% |
| 1b3qA04 | 2.40.50.180 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › CheA-289, Domain 4 | 0.53 | 40.0 | 4.20e-01 | 82.2% | 96.8% |
| 7l9pK01 | 3.30.900.10 | Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain | 0.52 | 38.0 | 3.30e-01 | 79.5% | 97.5% |
| 2z4hA02 | 2.40.50.540 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NlpE, C-terminal domain | 0.52 | 39.0 | 3.75e-01 | 83.6% | 83.7% |
| 2qdlA02 | 2.40.50.180 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › CheA-289, Domain 4 | 0.51 | 43.0 | 4.16e-01 | 100.0% | 85.5% |
| 3rmhB00 | 2.40.50.810 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.51 | 39.0 | 3.30e-01 | 87.7% | 75.2% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3963519 | 101.15.1.1 ↗ | alpha arrays › HTH › LysM domain › LysM domain › LysM | 0.88 | 70.0 | 7.46e-01 | 83.6% | 95.4% |
| 1649977 | 101.15.1.2 ↗ | alpha arrays › HTH › LysM domain › LysM domain › OapA | 0.63 | 55.0 | 5.22e-01 | 100.0% | 91.1% |
| 4039533 | 3321.1.1.1 ↗ | a+b two layers › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › FAS_meander | 0.57 | 48.0 | 3.86e-01 | 100.0% | 75.6% |
| 5020421 | 2.10.1.1 ↗ | beta barrels › OB-fold › CheW › CheW › CheW | 0.54 | 46.0 | 3.93e-01 | 100.0% | 81.5% |
| 3970756 | 2.10.1.0 ↗ | beta barrels › OB-fold › CheW › CheW | 0.53 | 45.0 | 3.60e-01 | 100.0% | 70.9% |
D2
high
residues 166-266
Domain cluster:
rep: KR131710.1__AKC57518.1__HMPREF1993_00025__00024__D3-73_141-155
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3gqbA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.83 | 53.0 | 6.34e-01 | 94.1% | 93.0% |
| 6oqrA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.81 | 53.0 | 5.68e-01 | 95.0% | 75.6% |
| 2wssA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.80 | 54.0 | 5.70e-01 | 98.0% | 75.3% |
| 1fx0B01 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.74 | 54.0 | 6.11e-01 | 94.1% | 96.2% |
| 3w1eA03 | 2.40.10.410 | Mainly Beta › Beta Barrel › Thrombin, subunit H › FlgT, C-terminal domain | 0.71 | 57.0 | 6.04e-01 | 93.1% | 95.5% |
| 6f2mA02 | 2.40.30.290 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.67 | 48.0 | 5.15e-01 | 97.0% | 86.2% |
| 1ywuA00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.65 | 50.0 | 4.64e-01 | 89.1% | 64.8% |
| 2egvA01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.65 | 41.0 | 4.96e-01 | 83.2% | 97.0% |
| 3nfwA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.62 | 50.0 | 4.09e-01 | 86.1% | 67.0% |
| 3qtgA02 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.61 | 50.0 | 5.16e-01 | 97.0% | 92.6% |
| 1vhkA01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.61 | 42.0 | 4.85e-01 | 83.2% | 97.3% |
| 7oo1A01 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.61 | 44.0 | 5.01e-01 | 82.2% | 100.0% |
| 3gg8C03 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.59 | 49.0 | 5.06e-01 | 96.0% | 92.8% |
| 4zgnB00 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.59 | 45.0 | 4.53e-01 | 83.2% | 78.6% |
| 3okxB00 | 2.40.30.70 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › YaeB-like | 0.59 | 53.0 | 4.69e-01 | 100.0% | 81.9% |
| 2nv4A00 | 2.40.30.70 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › YaeB-like | 0.58 | 53.0 | 4.82e-01 | 99.0% | 91.7% |
| 8eq1A01 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.58 | 48.0 | 5.10e-01 | 92.1% | 100.0% |
| 8aa9A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 34.0 | 3.25e-01 | 94.1% | 53.5% |
| 1xqbA01 | 2.40.30.70 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › YaeB-like | 0.56 | 46.0 | 4.56e-01 | 100.0% | 85.3% |
| 1kjzA03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.55 | 40.0 | 4.15e-01 | 82.2% | 82.6% |
| 7r6yA01 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.55 | 47.0 | 4.91e-01 | 92.1% | 100.0% |
| 1shyA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.55 | 41.0 | 4.10e-01 | 91.1% | 79.4% |
| 3dn7A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 34.0 | 2.97e-01 | 94.1% | 43.4% |
| 1o5lA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 33.0 | 3.01e-01 | 95.0% | 47.3% |
| 5z06B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 34.0 | 3.61e-01 | 93.1% | 71.7% |
| 1d3bC00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 35.0 | 4.03e-01 | 94.1% | 97.2% |
| 1v9kA00 | 3.30.2350.10 | Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase | 0.52 | 41.0 | 3.21e-01 | 85.1% | 63.9% |
| 7pzaA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 32.0 | 2.99e-01 | 94.1% | 50.8% |
| 1ok0A00 | 2.60.40.20 | Mainly Beta › Sandwich › Immunoglobulin-like › Alpha-amylase inhibitor | 0.51 | 35.0 | 3.86e-01 | 99.0% | 97.3% |
| 2jwyA01 | 2.60.40.1620 | Mainly Beta › Sandwich › Immunoglobulin-like › Lipoprotein YajI-like | 0.51 | 44.0 | 4.05e-01 | 100.0% | 87.4% |
| 2zotC00 | 2.60.40.4060 | Mainly Beta › Sandwich › Immunoglobulin-like › Reeler domain | 0.50 | 44.0 | 3.96e-01 | 98.0% | 83.6% |
ECOD (59)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3966310 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.93 | 83.0 | 8.60e-01 | 96.0% | 97.9% |
| 3963475 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.91 | 79.0 | 8.17e-01 | 98.0% | 95.8% |
| 4128405 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.88 | 55.0 | 6.57e-01 | 94.1% | 91.4% |
| 3385895 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.86 | 66.0 | 7.32e-01 | 94.1% | 100.0% |
| 4407497 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.84 | 53.0 | 6.53e-01 | 92.1% | 98.5% |
| 4880414 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.84 | 53.0 | 6.40e-01 | 94.1% | 94.2% |
| 4245518 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.84 | 54.0 | 6.30e-01 | 94.1% | 89.3% |
| 5080901 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.83 | 53.0 | 5.93e-01 | 94.1% | 81.2% |
| 3965822 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.83 | 68.0 | 7.25e-01 | 94.1% | 95.6% |
| 3973553 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.83 | 54.0 | 6.47e-01 | 97.0% | 95.7% |
| 4038642 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.83 | 55.0 | 6.55e-01 | 100.0% | 97.1% |
| 4273414 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.83 | 55.0 | 6.55e-01 | 100.0% | 97.1% |
| 3967745 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.83 | 57.0 | 6.57e-01 | 97.0% | 94.7% |
| 4625449 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.83 | 66.0 | 6.96e-01 | 94.1% | 93.3% |
| 3975132 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.82 | 54.0 | 5.69e-01 | 97.0% | 74.4% |
| 3387360 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.82 | 57.0 | 6.18e-01 | 98.0% | 84.7% |
| 4066146 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.81 | 56.0 | 5.52e-01 | 97.0% | 67.6% |
| 4526316 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.78 | 55.0 | 5.74e-01 | 99.0% | 77.9% |
| 3204011 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.77 | 56.0 | 5.94e-01 | 100.0% | 84.4% |
| 3966724 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.76 | 68.0 | 7.00e-01 | 94.1% | 98.9% |
| 4083044 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.76 | 52.0 | 5.95e-01 | 97.0% | 94.7% |
| 5051090 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.74 | 52.0 | 5.74e-01 | 100.0% | 91.3% |
| 4382401 | 1.1.7.100 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PGBA_N | 0.74 | 58.0 | 6.31e-01 | 93.1% | 97.6% |
| 3388311 | 1.1.7.100 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PGBA_N | 0.74 | 57.0 | 6.23e-01 | 93.1% | 96.5% |
| 4085589 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.71 | 52.0 | 5.77e-01 | 97.0% | 96.2% |
| 1005534 | 1.1.7.37 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FlgT_C | 0.70 | 57.0 | 6.06e-01 | 94.1% | 95.6% |
| 5057245 | 1.1.15.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like | 0.66 | 51.0 | 5.39e-01 | 98.0% | 92.2% |
| 5072694 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.64 | 48.0 | 5.18e-01 | 96.0% | 94.1% |
| 3310664 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.63 | 53.0 | 5.44e-01 | 98.0% | 93.7% |
| 4954732 | 1.1.15.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like | 0.62 | 49.0 | 5.20e-01 | 97.0% | 94.4% |
| 1516038 | 1.1.15.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like | 0.61 | 50.0 | 5.16e-01 | 97.0% | 92.6% |
| 4251719 | 1.1.15.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like | 0.61 | 51.0 | 5.28e-01 | 97.0% | 94.7% |
| 4379635 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.61 | 50.0 | 5.22e-01 | 97.0% | 93.7% |
| 4468653 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.61 | 50.0 | 5.16e-01 | 96.0% | 92.6% |
| 3966502 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.61 | 51.0 | 5.22e-01 | 98.0% | 92.0% |
| 4337888 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.61 | 51.0 | 5.15e-01 | 99.0% | 91.0% |
| 4949379 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.60 | 51.0 | 5.12e-01 | 98.0% | 91.0% |
| 4972564 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.60 | 49.0 | 5.04e-01 | 96.0% | 91.6% |
| 4994399 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.60 | 50.0 | 5.13e-01 | 96.0% | 93.7% |
| 5001027 | 1.1.15.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like | 0.60 | 48.0 | 5.07e-01 | 96.0% | 95.6% |
| 4984743 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.60 | 48.0 | 5.01e-01 | 93.1% | 91.6% |
| 4944119 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.59 | 48.0 | 4.95e-01 | 93.1% | 91.6% |
| 4192745 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.59 | 48.0 | 5.01e-01 | 96.0% | 93.7% |
| 140548 | 1.1.7.13 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › TrmO | 0.59 | 53.0 | 4.59e-01 | 100.0% | 76.3% |
| 4283757 | 1.1.7.13 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › TrmO | 0.58 | 53.0 | 4.64e-01 | 100.0% | 81.9% |
| 3332717 | 1.1.15.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like | 0.58 | 49.0 | 4.86e-01 | 93.1% | 85.7% |
| 5003841 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.58 | 53.0 | 5.22e-01 | 100.0% | 97.3% |
| 4995896 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.58 | 52.0 | 4.79e-01 | 98.0% | 81.5% |
| 3386080 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.58 | 49.0 | 5.00e-01 | 97.0% | 93.0% |
| 3396811 | 1.1.15.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like | 0.57 | 50.0 | 5.08e-01 | 97.0% | 94.0% |
| 3880866 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.57 | 51.0 | 5.04e-01 | 99.0% | 92.4% |
| 3391250 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.57 | 50.0 | 4.62e-01 | 96.0% | 96.9% |
| 4968759 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 39.0 | 4.08e-01 | 92.1% | 80.0% |
| 3922124 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 36.0 | 3.85e-01 | 95.0% | 80.0% |
| 2845210 | 10.12.1.1 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › cNMP_binding | 0.54 | 32.0 | 2.90e-01 | 94.1% | 42.1% |
| 4311277 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.54 | 48.0 | 3.85e-01 | 97.0% | 95.9% |
| 4010788 | 304.102.1.1 ↗ | a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 | 0.53 | 41.0 | 3.16e-01 | 84.2% | 58.8% |
| 3171619 | 11.1.1.643 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig-like_POM152 | 0.51 | 35.0 | 3.71e-01 | 94.1% | 80.0% |
| 3592726 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 42.0 | 4.07e-01 | 94.1% | 84.3% |
D3
high
residues 288-378
Domain cluster:
rep: KR131710.1__AKC57518.1__HMPREF1993_00025__00024__D3-73_141-155
CATH (39)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6oqrA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.86 | 56.0 | 5.71e-01 | 100.0% | 67.8% |
| 3gqbA01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.83 | 55.0 | 6.22e-01 | 100.0% | 87.3% |
| 3w1eA03 | 2.40.10.410 | Mainly Beta › Beta Barrel › Thrombin, subunit H › FlgT, C-terminal domain | 0.80 | 70.0 | 7.14e-01 | 100.0% | 93.3% |
| 4v15A01 | 2.40.37.20 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › D-serine dehydratase-like domain | 0.75 | 51.0 | 4.35e-01 | 100.0% | 44.4% |
| 3gwqA01 | 2.40.37.20 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › D-serine dehydratase-like domain | 0.73 | 58.0 | 4.63e-01 | 100.0% | 44.3% |
| 4dt4A02 | 2.40.10.330 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.72 | 41.0 | 5.07e-01 | 79.1% | 91.2% |
| 1nxzA01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.69 | 48.0 | 5.37e-01 | 90.1% | 91.7% |
| 1z85A01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.68 | 45.0 | 5.15e-01 | 90.1% | 92.5% |
| 1vhkA01 | 2.40.240.20 | Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 | 0.65 | 47.0 | 5.21e-01 | 90.1% | 94.5% |
| 4i86A00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.64 | 49.0 | 4.76e-01 | 96.7% | 72.5% |
| 7oo1A01 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.64 | 51.0 | 5.50e-01 | 90.1% | 100.0% |
| 3okxB00 | 2.40.30.70 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › YaeB-like | 0.63 | 56.0 | 4.80e-01 | 100.0% | 77.9% |
| 1kjzA03 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.63 | 49.0 | 4.92e-01 | 90.1% | 81.5% |
| 3qtgA02 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.61 | 52.0 | 5.16e-01 | 100.0% | 88.3% |
| 4yhbA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.60 | 53.0 | 4.80e-01 | 100.0% | 86.8% |
| 4pg4B03 | 3.30.70.3100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 39.0 | 4.18e-01 | 84.6% | 78.7% |
| 3gg8C03 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.59 | 53.0 | 5.19e-01 | 100.0% | 90.7% |
| 2ok7A01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.59 | 52.0 | 4.89e-01 | 100.0% | 87.5% |
| 8eq1A01 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.59 | 52.0 | 5.33e-01 | 100.0% | 100.0% |
| 1evuA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 51.0 | 4.15e-01 | 100.0% | 68.2% |
| 3girA02 | 3.30.70.1400 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains | 0.57 | 43.0 | 4.46e-01 | 81.3% | 88.4% |
| 6su1D01 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.57 | 51.0 | 5.16e-01 | 100.0% | 100.0% |
| 7r6yA01 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.57 | 52.0 | 5.22e-01 | 100.0% | 100.0% |
| 4pbxA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 41.0 | 4.09e-01 | 100.0% | 76.1% |
| 1x5xA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 41.0 | 3.97e-01 | 100.0% | 67.0% |
| 1x5lA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.56 | 40.0 | 4.07e-01 | 98.9% | 78.4% |
| 1shyA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.55 | 43.0 | 4.19e-01 | 94.5% | 75.5% |
| 3tfiA00 | 3.30.1360.120 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 | 0.55 | 44.0 | 2.90e-01 | 85.7% | 66.4% |
| 4odbA00 | 2.60.90.20 | Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Virus attachment protein , globular domain | 0.54 | 47.0 | 3.93e-01 | 98.9% | 75.9% |
| 4lsdF00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 38.0 | 3.82e-01 | 100.0% | 71.4% |
| 2ic2A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 42.0 | 4.09e-01 | 100.0% | 76.9% |
| 2gysA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 43.0 | 4.43e-01 | 100.0% | 96.5% |
| 5e4sA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 40.0 | 4.00e-01 | 98.9% | 79.8% |
| 2erjB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 40.0 | 3.90e-01 | 100.0% | 74.0% |
| 2zotC00 | 2.60.40.4060 | Mainly Beta › Sandwich › Immunoglobulin-like › Reeler domain | 0.52 | 45.0 | 3.95e-01 | 97.8% | 72.1% |
| 2v5yA05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 38.0 | 3.80e-01 | 97.8% | 75.3% |
| 4bjyA02 | 3.30.9.30 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › | 0.50 | 34.0 | 2.61e-01 | 70.3% | 43.6% |
| 3hnmA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.50 | 43.0 | 3.64e-01 | 100.0% | 90.4% |
| 5e55B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 37.0 | 3.72e-01 | 100.0% | 78.5% |
ECOD (54)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3965822 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.97 | 86.0 | 8.70e-01 | 100.0% | 92.2% |
| 3966724 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.97 | 94.0 | 9.26e-01 | 100.0% | 95.8% |
| 4407497 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.85 | 57.0 | 6.62e-01 | 100.0% | 95.4% |
| 4625449 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.80 | 69.0 | 6.95e-01 | 100.0% | 90.0% |
| 1005534 | 1.1.7.37 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FlgT_C | 0.80 | 70.0 | 7.10e-01 | 100.0% | 92.2% |
| 3385895 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.78 | 63.0 | 6.78e-01 | 100.0% | 96.2% |
| 4382401 | 1.1.7.100 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PGBA_N | 0.77 | 66.0 | 6.82e-01 | 100.0% | 95.3% |
| 3388311 | 1.1.7.100 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PGBA_N | 0.77 | 64.0 | 6.68e-01 | 100.0% | 94.1% |
| 3963475 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.76 | 66.0 | 6.56e-01 | 100.0% | 88.4% |
| 3966310 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.75 | 69.0 | 6.83e-01 | 100.0% | 92.6% |
| 1789465 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.71 | 64.0 | 6.19e-01 | 97.8% | 96.0% |
| 3723768 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.68 | 56.0 | 5.70e-01 | 100.0% | 88.9% |
| 3611709 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.64 | 51.0 | 4.35e-01 | 87.9% | 60.7% |
| 4995896 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.62 | 55.0 | 4.91e-01 | 100.0% | 73.8% |
| 4994399 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.61 | 53.0 | 5.27e-01 | 100.0% | 90.5% |
| 2832216 | 1.1.5.24 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_T4_gp19 | 0.60 | 49.0 | 4.20e-01 | 91.2% | 83.0% |
| 3519748 | 11.1.1.924 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_F54D1_6_2 | 0.60 | 52.0 | 4.55e-01 | 98.9% | 81.4% |
| 3916538 | 12.5.1.15 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › FAM171A1-2-B_N | 0.60 | 52.0 | 4.28e-01 | 96.7% | 84.2% |
| 3830759 | 11.1.1.122 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GO-like_E_set | 0.59 | 51.0 | 4.86e-01 | 100.0% | 81.8% |
| 3705968 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.59 | 47.0 | 4.09e-01 | 89.0% | 57.9% |
| 3313542 | 1.1.15.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like | 0.58 | 53.0 | 5.10e-01 | 100.0% | 91.4% |
| 4492958 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.58 | 51.0 | 4.92e-01 | 100.0% | 88.6% |
| 3611967 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.57 | 47.0 | 4.14e-01 | 92.3% | 70.7% |
| 3444354 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.56 | 48.0 | 4.74e-01 | 100.0% | 88.0% |
| 3931538 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 44.0 | 4.27e-01 | 100.0% | 76.2% |
| 3257581 | 11.1.1.41 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C | 0.56 | 48.0 | 4.13e-01 | 100.0% | 81.8% |
| 3394885 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.55 | 47.0 | 4.50e-01 | 100.0% | 80.9% |
| 3513020 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 46.0 | 4.44e-01 | 100.0% | 80.9% |
| 5012903 | 1.1.7.141 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › MazE_antitoxin | 0.55 | 48.0 | 4.70e-01 | 100.0% | 89.0% |
| 3594267 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 47.0 | 4.44e-01 | 100.0% | 93.0% |
| 5055931 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 48.0 | 4.53e-01 | 100.0% | 82.7% |
| 4961996 | 11.1.1.1403 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1616 | 0.54 | 45.0 | 4.18e-01 | 95.6% | 83.2% |
| 3498432 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 38.0 | 3.85e-01 | 100.0% | 73.3% |
| 3319581 | 11.2.1.17 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › NT-C2 | 0.54 | 43.0 | 3.62e-01 | 87.9% | 57.0% |
| 4950626 | 11.1.1.1403 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1616 | 0.54 | 47.0 | 3.99e-01 | 100.0% | 62.7% |
| 4991164 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 44.0 | 4.51e-01 | 95.6% | 98.9% |
| 3211221 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 45.0 | 4.31e-01 | 100.0% | 81.0% |
| 3592053 | 71.1.1.0 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB | 0.53 | 38.0 | 3.01e-01 | 75.8% | 91.9% |
| 3652827 | 10.10.1.1 ↗ | beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT | 0.52 | 41.0 | 3.68e-01 | 86.8% | 62.2% |
| 3327977 | 10.10.1.1 ↗ | beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT | 0.52 | 41.0 | 3.72e-01 | 86.8% | 63.8% |
| 3412875 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.52 | 37.0 | 3.51e-01 | 72.5% | 94.3% |
| 3190054 | 12.1.1.94 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF4139 | 0.52 | 44.0 | 3.90e-01 | 98.9% | 71.0% |
| 3649432 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.52 | 42.0 | 3.50e-01 | 89.0% | 50.9% |
| 3389304 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.52 | 42.0 | 4.03e-01 | 100.0% | 78.1% |
| 3236983 | 11.1.1.804 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_ANOS1 | 0.52 | 42.0 | 3.92e-01 | 100.0% | 70.4% |
| 3856644 | 11.1.1.29 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG | 0.52 | 44.0 | 4.23e-01 | 100.0% | 80.9% |
| 5032599 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 41.0 | 3.91e-01 | 100.0% | 72.7% |
| 3972565 | 11.1.1.993 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF30426 | 0.52 | 45.0 | 4.17e-01 | 100.0% | 76.7% |
| 5032788 | 11.1.1.103 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB | 0.52 | 44.0 | 4.09e-01 | 100.0% | 77.6% |
| 3720149 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.52 | 45.0 | 4.17e-01 | 100.0% | 84.2% |
| 5017116 | 11.1.1.1403 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF1616 | 0.51 | 44.0 | 3.78e-01 | 98.9% | 69.9% |
| 3791696 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.51 | 40.0 | 3.41e-01 | 100.0% | 50.3% |
| 3577849 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.51 | 40.0 | 3.90e-01 | 100.0% | 78.0% |
| 5034334 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 39.0 | 3.85e-01 | 100.0% | 78.0% |