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CAKLQF020000034.1__CAH1095548.1__SAMEA5780031_03915__00004
Bact-VirCAKLQF020000034.1__CAH1095548.1__SAMEA5780031_03915__00004
Identity
- Kingdom:
- phage
Quality
96.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 282-395
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01960.24 best | ArgJ | 133.0 | 1.60e-38 | 100.0% | 29.9% |
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3it4D02 | 3.10.20.340 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › ArgJ beta chain, C-terminal domain | 0.97 | 87.0 | 8.61e-01 | 100.0% | 88.2% |
| 1vraB02 | 3.10.20.340 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › ArgJ beta chain, C-terminal domain | 0.95 | 91.0 | 8.65e-01 | 100.0% | 88.3% |
| 1vz8A02 | 3.10.20.340 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › ArgJ beta chain, C-terminal domain | 0.92 | 84.0 | 8.55e-01 | 97.4% | 96.4% |
| 2cs4A00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.57 | 39.0 | 4.19e-01 | 86.8% | 84.2% |
| 4dh4A00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.55 | 42.0 | 4.22e-01 | 79.8% | 94.7% |
| 2xczA00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.54 | 41.0 | 4.11e-01 | 79.8% | 93.9% |
| 1r3nG01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.54 | 41.0 | 3.02e-01 | 80.7% | 96.8% |
| 5ntdA02 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.52 | 39.0 | 2.84e-01 | 80.7% | 99.1% |
| 2wkbA01 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.51 | 39.0 | 4.15e-01 | 78.9% | 100.0% |
| 3hhmA03 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 41.0 | 3.90e-01 | 88.6% | 72.3% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4113371 | 3117.1.1.1 ↗ | a+b two layers › C-terminal domain of OAT (ornithine acetyltransferase) › C-terminal domain of OAT (ornithine acetyltransferase) › C-terminal domain of OAT (ornithine acetyltransferase) › ArgJ | 0.99 | 96.0 | 8.79e-01 | 100.0% | 81.9% |
| 4948959 | 231.1.2.1 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › ArgJ | 0.97 | 92.0 | 6.13e-01 | 100.0% | 30.4% |
| 3958072 | 3117.1.1.0 ↗ | a+b two layers › C-terminal domain of OAT (ornithine acetyltransferase) › C-terminal domain of OAT (ornithine acetyltransferase) › C-terminal domain of OAT (ornithine acetyltransferase) | 0.97 | 90.0 | 8.86e-01 | 100.0% | 90.8% |
| 3289722 | 3117.1.1.1 ↗ | a+b two layers › C-terminal domain of OAT (ornithine acetyltransferase) › C-terminal domain of OAT (ornithine acetyltransferase) › C-terminal domain of OAT (ornithine acetyltransferase) › ArgJ | 0.97 | 90.0 | 8.76e-01 | 100.0% | 88.6% |
| 4514362 | 3117.1.1.1 ↗ | a+b two layers › C-terminal domain of OAT (ornithine acetyltransferase) › C-terminal domain of OAT (ornithine acetyltransferase) › C-terminal domain of OAT (ornithine acetyltransferase) › ArgJ | 0.96 | 94.0 | 8.58e-01 | 100.0% | 92.1% |
| 4200764 | 3117.1.1.1 ↗ | a+b two layers › C-terminal domain of OAT (ornithine acetyltransferase) › C-terminal domain of OAT (ornithine acetyltransferase) › C-terminal domain of OAT (ornithine acetyltransferase) › ArgJ | 0.95 | 92.0 | 8.34e-01 | 100.0% | 89.7% |
| 4124291 | 3117.1.1.1 ↗ | a+b two layers › C-terminal domain of OAT (ornithine acetyltransferase) › C-terminal domain of OAT (ornithine acetyltransferase) › C-terminal domain of OAT (ornithine acetyltransferase) › ArgJ | 0.95 | 92.0 | 8.59e-01 | 100.0% | 91.1% |
| 4041443 | 3117.1.1.1 ↗ | a+b two layers › C-terminal domain of OAT (ornithine acetyltransferase) › C-terminal domain of OAT (ornithine acetyltransferase) › C-terminal domain of OAT (ornithine acetyltransferase) › ArgJ | 0.95 | 92.0 | 8.51e-01 | 100.0% | 88.4% |
| 4105164 | 3117.1.1.1 ↗ | a+b two layers › C-terminal domain of OAT (ornithine acetyltransferase) › C-terminal domain of OAT (ornithine acetyltransferase) › C-terminal domain of OAT (ornithine acetyltransferase) › ArgJ | 0.95 | 92.0 | 8.16e-01 | 100.0% | 94.0% |
| 3635102 | 3117.1.1.1 ↗ | a+b two layers › C-terminal domain of OAT (ornithine acetyltransferase) › C-terminal domain of OAT (ornithine acetyltransferase) › C-terminal domain of OAT (ornithine acetyltransferase) › ArgJ | 0.95 | 91.0 | 8.08e-01 | 100.0% | 85.0% |
| 4460361 | 3117.1.1.1 ↗ | a+b two layers › C-terminal domain of OAT (ornithine acetyltransferase) › C-terminal domain of OAT (ornithine acetyltransferase) › C-terminal domain of OAT (ornithine acetyltransferase) › ArgJ | 0.95 | 90.0 | 8.66e-01 | 100.0% | 89.6% |
| 4639273 | 3117.1.1.1 ↗ | a+b two layers › C-terminal domain of OAT (ornithine acetyltransferase) › C-terminal domain of OAT (ornithine acetyltransferase) › C-terminal domain of OAT (ornithine acetyltransferase) › ArgJ | 0.94 | 91.0 | 8.79e-01 | 100.0% | 91.2% |
| 4544249 | 3117.1.1.1 ↗ | a+b two layers › C-terminal domain of OAT (ornithine acetyltransferase) › C-terminal domain of OAT (ornithine acetyltransferase) › C-terminal domain of OAT (ornithine acetyltransferase) › ArgJ | 0.94 | 90.0 | 8.53e-01 | 100.0% | 86.9% |
| 4057010 | 3117.1.1.1 ↗ | a+b two layers › C-terminal domain of OAT (ornithine acetyltransferase) › C-terminal domain of OAT (ornithine acetyltransferase) › C-terminal domain of OAT (ornithine acetyltransferase) › ArgJ | 0.94 | 90.0 | 8.83e-01 | 100.0% | 94.2% |
| 4331305 | 3117.1.1.1 ↗ | a+b two layers › C-terminal domain of OAT (ornithine acetyltransferase) › C-terminal domain of OAT (ornithine acetyltransferase) › C-terminal domain of OAT (ornithine acetyltransferase) › ArgJ | 0.93 | 90.0 | 8.40e-01 | 100.0% | 89.6% |
| 4089862 | 3117.1.1.1 ↗ | a+b two layers › C-terminal domain of OAT (ornithine acetyltransferase) › C-terminal domain of OAT (ornithine acetyltransferase) › C-terminal domain of OAT (ornithine acetyltransferase) › ArgJ | 0.93 | 89.0 | 8.08e-01 | 100.0% | 93.8% |
| 5056021 | 3117.1.1.1 ↗ | a+b two layers › C-terminal domain of OAT (ornithine acetyltransferase) › C-terminal domain of OAT (ornithine acetyltransferase) › C-terminal domain of OAT (ornithine acetyltransferase) › ArgJ | 0.93 | 89.0 | 8.56e-01 | 100.0% | 90.4% |
| 4502082 | 3117.1.1.1 ↗ | a+b two layers › C-terminal domain of OAT (ornithine acetyltransferase) › C-terminal domain of OAT (ornithine acetyltransferase) › C-terminal domain of OAT (ornithine acetyltransferase) › ArgJ | 0.82 | 77.0 | 7.38e-01 | 100.0% | 90.8% |
| 3459483 | 221.1.1.2 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › ubiquitin | 0.64 | 43.0 | 4.95e-01 | 87.7% | 98.8% |
| 3782281 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.62 | 45.0 | 4.99e-01 | 87.7% | 97.7% |
| 5052433 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.62 | 49.0 | 5.15e-01 | 91.2% | 95.0% |
| 3604296 | 223.8.1.0 ↗ | a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain | 0.60 | 46.0 | 5.08e-01 | 82.5% | 97.8% |
| 5034188 | 2011.1.1.8 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M28 | 0.56 | 43.0 | 3.29e-01 | 81.6% | 91.6% |
| 5058142 | 2485.2.1.1 ↗ | a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RTC_insert | 0.52 | 34.0 | 3.61e-01 | 93.0% | 75.0% |
| 4947080 | 2485.2.1.4 ↗ | a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RTC | 0.50 | 35.0 | 3.66e-01 | 93.0% | 77.1% |
| 4300623 | 7558.1.1.1 ↗ | a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Acyltransferase | 0.50 | 35.0 | 2.79e-01 | 71.9% | 84.2% |
D2
medium
residues 4-154
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01960.24 best | ArgJ | 128.6 | 3.60e-37 | 90.7% | 34.8% |
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vraA00 | 3.60.70.12 | Alpha Beta › 4-Layer Sandwich › L-amino peptidase D-ALA esterase/amidase › L-amino peptidase D-ALA esterase/amidase | 0.94 | 89.0 | 8.07e-01 | 97.4% | 78.0% |
| 1vz6A01 | 3.60.70.12 | Alpha Beta › 4-Layer Sandwich › L-amino peptidase D-ALA esterase/amidase › L-amino peptidase D-ALA esterase/amidase | 0.93 | 85.0 | 6.89e-01 | 94.0% | 56.1% |
| 4uhwA09 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.72 | 40.0 | 4.96e-01 | 82.1% | 85.4% |
| 2w3sB03 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.71 | 40.0 | 4.96e-01 | 83.4% | 87.2% |
| 4bpeC01 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.62 | 33.0 | 4.18e-01 | 90.7% | 85.9% |
| 5xyiD01 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.61 | 34.0 | 4.31e-01 | 92.1% | 93.3% |
| 1alo006 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.57 | 41.0 | 4.49e-01 | 83.4% | 88.9% |
| 7px0A01 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.57 | 43.0 | 4.77e-01 | 83.4% | 97.5% |
| 2e1qC10 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.56 | 43.0 | 4.63e-01 | 84.1% | 92.2% |
| 3kanA00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.55 | 37.0 | 4.07e-01 | 92.7% | 86.3% |
| 4zohA05 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.53 | 42.0 | 4.35e-01 | 83.4% | 94.5% |
| 7uvpA03 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.53 | 42.0 | 4.27e-01 | 83.4% | 97.9% |
| 2wkbA01 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.53 | 32.0 | 3.86e-01 | 92.1% | 92.8% |
| 3alxC02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 26.0 | 3.08e-01 | 84.1% | 65.0% |
| 2xczA00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.53 | 35.0 | 3.88e-01 | 92.1% | 86.8% |
| 2os5A00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.53 | 35.0 | 3.86e-01 | 92.7% | 84.7% |
| 2ljpA00 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.52 | 39.0 | 4.31e-01 | 86.8% | 100.0% |
| 4dh4A00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.52 | 34.0 | 3.83e-01 | 92.1% | 88.6% |
| 3slgC02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.51 | 31.0 | 3.76e-01 | 81.5% | 98.9% |
| 2fltA00 | 3.30.429.10 | Alpha Beta › 2-Layer Sandwich › Macrophage Migration Inhibitory Factor › Macrophage Migration Inhibitory Factor | 0.50 | 35.0 | 3.86e-01 | 92.1% | 90.6% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4656770 | 231.1.2.1 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › ArgJ | 0.97 | 92.0 | 7.22e-01 | 96.7% | 55.6% |
| 4422328 | 231.1.2.1 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › ArgJ | 0.97 | 94.0 | 7.18e-01 | 99.3% | 58.3% |
| 3958073 | 231.1.2.0 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ | 0.97 | 92.0 | 7.26e-01 | 97.4% | 58.1% |
| 3282649 | 231.1.2.1 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › ArgJ | 0.96 | 92.0 | 7.15e-01 | 97.4% | 56.1% |
| 4977327 | 231.1.2.1 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › ArgJ | 0.96 | 91.0 | 7.09e-01 | 96.7% | 53.9% |
| 385396 | 231.1.2.1 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › ArgJ | 0.96 | 92.0 | 8.24e-01 | 97.4% | 81.3% |
| 4287687 | 231.1.2.1 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › ArgJ | 0.96 | 93.0 | 7.24e-01 | 100.0% | 54.7% |
| 4414104 | 231.1.2.1 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › ArgJ | 0.95 | 92.0 | 6.96e-01 | 99.3% | 56.1% |
| 4541277 | 231.1.2.1 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › ArgJ | 0.95 | 87.0 | 7.06e-01 | 93.4% | 56.8% |
| 4188865 | 231.1.2.1 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › ArgJ | 0.95 | 93.0 | 7.23e-01 | 100.0% | 56.8% |
| 4224824 | 231.1.2.1 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › ArgJ | 0.94 | 91.0 | 6.68e-01 | 99.3% | 58.2% |
| 4497100 | 231.1.2.1 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › ArgJ | 0.94 | 86.0 | 6.95e-01 | 94.7% | 55.7% |
| 4573277 | 231.1.2.1 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › ArgJ | 0.94 | 91.0 | 6.97e-01 | 100.0% | 55.3% |
| 4948959 | 231.1.2.1 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › ArgJ | 0.93 | 80.0 | 5.72e-01 | 90.7% | 36.2% |
| 1069522 | 231.1.2.1 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › ArgJ | 0.93 | 85.0 | 8.00e-01 | 94.0% | 82.1% |
| 4380384 | 231.1.2.1 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › ArgJ | 0.92 | 83.0 | 6.75e-01 | 93.4% | 66.7% |
| 4512313 | 231.1.2.1 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › ArgJ | 0.92 | 65.0 | 5.60e-01 | 72.2% | 53.6% |
| 4952699 | 231.1.2.1 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › ArgJ | 0.91 | 84.0 | 6.69e-01 | 96.7% | 53.3% |
| 4112632 | 231.1.2.1 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › ArgJ | 0.90 | 84.0 | 6.63e-01 | 96.7% | 56.0% |
| 4648883 | 231.1.2.1 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › ArgJ | 0.89 | 86.0 | 6.74e-01 | 100.0% | 60.4% |
| 3595049 | 3662.1.1.0 ↗ | a+b two layers › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related › Proteasome assembling chaperone 3 (PAC3)-related | 0.56 | 43.0 | 4.07e-01 | 80.1% | 100.0% |
| 4936105 | 231.1.2.3 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › CbiZ | 0.56 | 47.0 | 4.37e-01 | 88.7% | 98.4% |
| 4873716 | 315.1.1.1 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › MIF | 0.56 | 37.0 | 4.09e-01 | 92.7% | 87.0% |
| 2771782 | 315.1.1.1 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › MIF | 0.55 | 37.0 | 4.06e-01 | 92.7% | 85.6% |
| 2997053 | 231.1.1.2 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › Molybdenum cofactor-binding domain › MoCoBD_2 | 0.55 | 47.0 | 3.58e-01 | 90.7% | 87.2% |
| 4015565 | 315.1.1.0 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF | 0.54 | 36.0 | 3.87e-01 | 92.1% | 80.6% |
| 3179912 | 315.1.1.1 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › MIF | 0.54 | 35.0 | 3.79e-01 | 92.7% | 76.9% |
| 3574029 | 389.1.2.0 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain | 0.53 | 20.0 | 2.91e-01 | 94.0% | 75.4% |
| 3725665 | 315.1.1.1 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › MIF | 0.52 | 35.0 | 3.62e-01 | 92.7% | 71.4% |
| 3244391 | 315.1.1.1 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › MIF | 0.52 | 34.0 | 3.75e-01 | 92.1% | 81.7% |
| 3205396 | 315.1.1.1 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › MIF | 0.52 | 35.0 | 3.86e-01 | 92.1% | 87.8% |
| 3108975 | 315.1.1.1 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › MIF | 0.52 | 34.0 | 3.77e-01 | 92.7% | 85.2% |
| 3969050 | 231.1.1.3 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › Molybdenum cofactor-binding domain › MoCoBD_1, MoCoBD_2 | 0.52 | 42.0 | 2.83e-01 | 86.8% | 25.2% |
| 3502929 | 315.1.1.1 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › MIF | 0.51 | 35.0 | 3.77e-01 | 92.1% | 83.9% |
| 2320168 | 315.1.1.1 ↗ | a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF › MIF | 0.50 | 33.0 | 3.68e-01 | 92.1% | 86.1% |
| 4952354 | 2008.1.1.59 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_1 | 0.50 | 37.0 | 2.77e-01 | 76.2% | 56.6% |
D3
medium
residues 155-277
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01960.24 best | ArgJ | 150.3 | 9.10e-44 | 100.0% | 30.8% |
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vz6A01 | 3.60.70.12 | Alpha Beta › 4-Layer Sandwich › L-amino peptidase D-ALA esterase/amidase › L-amino peptidase D-ALA esterase/amidase | 0.96 | 84.0 | 6.36e-01 | 100.0% | 43.9% |
| 2drhB00 | 3.60.70.12 | Alpha Beta › 4-Layer Sandwich › L-amino peptidase D-ALA esterase/amidase › L-amino peptidase D-ALA esterase/amidase | 0.71 | 66.0 | 4.69e-01 | 100.0% | 47.6% |
| 3s3uB00 | 3.60.70.12 | Alpha Beta › 4-Layer Sandwich › L-amino peptidase D-ALA esterase/amidase › L-amino peptidase D-ALA esterase/amidase | 0.71 | 66.0 | 4.65e-01 | 100.0% | 52.8% |
| 3axgK00 | 3.60.70.12 | Alpha Beta › 4-Layer Sandwich › L-amino peptidase D-ALA esterase/amidase › L-amino peptidase D-ALA esterase/amidase | 0.71 | 65.0 | 4.64e-01 | 98.4% | 48.2% |
| 2e1qC08 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.68 | 58.0 | 5.18e-01 | 100.0% | 65.9% |
| 1dgjA04 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.67 | 56.0 | 5.17e-01 | 100.0% | 70.3% |
| 1rm6A03 | 3.30.365.10 | Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain | 0.66 | 46.0 | 4.57e-01 | 87.8% | 67.4% |
| 1z5bB03 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.64 | 59.0 | 5.54e-01 | 100.0% | 85.2% |
| 6jptA00 | 3.30.230.90 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.62 | 55.0 | 5.56e-01 | 92.7% | 97.5% |
| 6gp1A00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.60 | 30.0 | 3.84e-01 | 88.6% | 86.2% |
| 6m9yA00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.59 | 30.0 | 3.95e-01 | 92.7% | 100.0% |
| 1tkjA00 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.57 | 41.0 | 3.23e-01 | 75.6% | 83.0% |
| 1vi7A01 | 3.30.230.30 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › Impact, N-terminal domain | 0.56 | 50.0 | 4.91e-01 | 98.4% | 94.8% |
| 3zkbI02 | 3.30.230.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.55 | 48.0 | 4.49e-01 | 100.0% | 76.9% |
| 1s3rA02 | 3.30.1040.20 | Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › | 0.54 | 23.0 | 3.34e-01 | 71.5% | 90.6% |
| 2xskA00 | 2.60.40.2420 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 29.0 | 3.24e-01 | 98.4% | 65.3% |
| 3tekA00 | 3.30.470.50 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › | 0.51 | 45.0 | 4.37e-01 | 98.4% | 96.4% |
| 4meaA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.51 | 37.0 | 2.76e-01 | 75.6% | 65.4% |
| 4f0jA00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.50 | 38.0 | 2.83e-01 | 89.4% | 30.8% |
ECOD (38)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4188865 | 231.1.2.1 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › ArgJ | 0.99 | 95.0 | 6.92e-01 | 98.4% | 43.2% |
| 4656770 | 231.1.2.1 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › ArgJ | 0.98 | 90.0 | 6.64e-01 | 100.0% | 43.0% |
| 4497100 | 231.1.2.1 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › ArgJ | 0.98 | 86.0 | 6.48e-01 | 100.0% | 43.5% |
| 4422328 | 231.1.2.1 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › ArgJ | 0.98 | 93.0 | 6.68e-01 | 100.0% | 40.7% |
| 4648883 | 231.1.2.1 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › ArgJ | 0.98 | 87.0 | 6.30e-01 | 100.0% | 39.3% |
| 4287687 | 231.1.2.1 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › ArgJ | 0.97 | 95.0 | 6.88e-01 | 100.0% | 44.2% |
| 4414104 | 231.1.2.1 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › ArgJ | 0.97 | 95.0 | 6.71e-01 | 100.0% | 43.5% |
| 4573277 | 231.1.2.1 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › ArgJ | 0.97 | 94.0 | 6.71e-01 | 99.2% | 44.7% |
| 4541277 | 231.1.2.1 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › ArgJ | 0.97 | 83.0 | 6.30e-01 | 98.4% | 43.2% |
| 4948959 | 231.1.2.1 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › ArgJ | 0.97 | 85.0 | 5.78e-01 | 100.0% | 30.4% |
| 4112632 | 231.1.2.1 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › ArgJ | 0.96 | 89.0 | 6.49e-01 | 100.0% | 42.2% |
| 4224824 | 231.1.2.1 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › ArgJ | 0.96 | 93.0 | 6.45e-01 | 100.0% | 41.5% |
| 3282649 | 231.1.2.1 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › ArgJ | 0.96 | 86.0 | 6.26e-01 | 100.0% | 40.4% |
| 3958073 | 231.1.2.0 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ | 0.96 | 86.0 | 6.32e-01 | 100.0% | 41.9% |
| 1101260 | 231.1.2.1 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › ArgJ | 0.95 | 62.0 | 7.58e-01 | 71.5% | 97.6% |
| 4952699 | 231.1.2.1 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › ArgJ | 0.93 | 89.0 | 6.60e-01 | 99.2% | 44.8% |
| 4512313 | 231.1.2.1 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › ArgJ | 0.93 | 86.0 | 6.78e-01 | 94.3% | 95.0% |
| 4977327 | 231.1.2.1 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › ArgJ | 0.93 | 90.0 | 6.57e-01 | 100.0% | 45.0% |
| 4380384 | 231.1.2.1 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › ArgJ | 0.80 | 74.0 | 5.61e-01 | 100.0% | 46.3% |
| 4930952 | 231.1.2.3 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › CbiZ | 0.75 | 71.0 | 5.81e-01 | 100.0% | 60.5% |
| 147722 | 231.1.2.2 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › Peptidase_S58 | 0.71 | 66.0 | 4.65e-01 | 100.0% | 52.5% |
| 4936105 | 231.1.2.3 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › DmpA/ArgJ › CbiZ | 0.70 | 62.0 | 5.40e-01 | 99.2% | 63.8% |
| 3970661 | 231.1.1.0 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › Molybdenum cofactor-binding domain | 0.64 | 59.0 | 3.76e-01 | 100.0% | 38.1% |
| 4928705 | 212.1.1.22 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Topo-VIb_trans | 0.64 | 58.0 | 4.85e-01 | 100.0% | 67.1% |
| 3970947 | 231.1.1.3 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › Molybdenum cofactor-binding domain › MoCoBD_1, MoCoBD_2 | 0.63 | 57.0 | 3.63e-01 | 100.0% | 24.6% |
| 5064329 | 231.1.1.2 ↗ | a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › Molybdenum cofactor-binding domain › MoCoBD_2 | 0.61 | 55.0 | 4.26e-01 | 100.0% | 44.4% |
| 4083442 | 2011.1.1.6 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Peptidase_M20 | 0.60 | 44.0 | 3.38e-01 | 75.6% | 87.0% |
| 3510355 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.60 | 41.0 | 4.24e-01 | 84.6% | 73.3% |
| 4388709 | 4.1.1.346 ↗ | beta barrels › SH3 › SH3 › SH3 › FlgH | 0.58 | 28.0 | 3.75e-01 | 70.7% | 87.7% |
| 3480572 | 246.3.1.0 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like | 0.58 | 43.0 | 3.31e-01 | 78.0% | 37.0% |
| 3507519 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.56 | 27.0 | 3.82e-01 | 72.4% | 96.7% |
| 3630159 | 2007.2.3.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Syja_N | 0.55 | 49.0 | 3.67e-01 | 99.2% | 87.1% |
| 3016540 | 7579.1.1.42 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Hydrolase_4 | 0.54 | 39.0 | 3.11e-01 | 76.4% | 69.1% |
| 3175131 | 246.3.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › Exo_endo_phos | 0.53 | 42.0 | 3.03e-01 | 85.4% | 37.8% |
| 3290484 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.52 | 45.0 | 4.08e-01 | 97.6% | 97.7% |
| 3613168 | 5.1.3.28 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 | 0.52 | 33.0 | 2.30e-01 | 97.6% | 19.5% |
| 5041129 | 7579.1.1.42 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Hydrolase_4 | 0.51 | 37.0 | 2.86e-01 | 75.6% | 66.4% |
| 3966456 | 7579.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases | 0.50 | 37.0 | 2.80e-01 | 89.4% | 30.5% |