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CAKLQF020000056.1__CAH1097204.1__SAMEA5780031_04083__00001

Bact-Vir

CAKLQF020000056.1__CAH1097204.1__SAMEA5780031_04083__00001

Identity

Kingdom:
phage

Quality

84.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 51-95_428-471
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14319.12 best Zn_Tnp_IS91 37.9 1.90e-09 58.4% 45.6%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ir9A02 3.30.1330.30 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 0.66 44.0 3.93e-01 83.1% 50.0%
2ww8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 34.0 3.25e-01 76.4% 44.3%
1f94A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.58 31.0 3.64e-01 80.9% 73.0%
2yuxA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 33.0 3.16e-01 73.0% 48.1%
2zuoA08 2.30.30.620 Mainly Beta › Roll › SH3 type barrels. › 0.55 29.0 3.41e-01 73.0% 75.9%
5cw3C01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.54 41.0 3.49e-01 80.9% 90.5%
3g7mA00 2.60.110.10 Mainly Beta › Sandwich › Thaumatin › Thaumatin 0.53 36.0 3.08e-01 77.5% 41.7%
1y6kR01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 35.0 3.35e-01 83.1% 57.8%
3axsA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 44.0 2.94e-01 88.8% 28.3%
4czwA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.52 43.0 2.83e-01 89.9% 52.3%
8bs9A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.52 44.0 3.05e-01 93.3% 64.3%
1bw3A00 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.51 41.0 3.70e-01 87.6% 78.4%
5cvmA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.50 42.0 2.89e-01 91.0% 61.4%
3ougA00 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.50 31.0 2.96e-01 73.0% 50.9%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5061487 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.65 41.0 3.57e-01 84.3% 41.3%
3259531 11.1.4.16 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › EMC7_beta-sandw 0.65 36.0 3.38e-01 77.5% 43.6%
3571451 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.60 34.0 3.06e-01 77.5% 39.2%
3547918 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.60 37.0 3.19e-01 80.9% 39.3%
8264 382.1.1.2 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Toxin_TOLIP 0.58 31.0 3.64e-01 80.9% 73.0%
3234020 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.58 34.0 3.41e-01 70.8% 56.7%
3891518 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 34.0 3.35e-01 70.8% 52.6%
2172423 3529.1.1.4 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault_4 0.56 29.0 3.65e-01 73.0% 88.0%
3026658 69.1.1.0 beta complex topology › Hedgehog/intein › Hedgehog/intein › Hint 0.54 36.0 3.00e-01 79.8% 37.7%
3222792 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 34.0 3.27e-01 79.8% 55.0%
3177995 5050.1.1.32 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Acatn 0.54 38.0 2.37e-01 89.9% 12.1%
3897370 3346.1.1.5 a+b two layers › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › ODR4-like 0.53 32.0 2.45e-01 75.3% 24.9%
None 0.53 46.0 3.00e-01 93.3% 30.8%
4519877 3529.1.1.4 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault_4 0.53 28.0 3.00e-01 73.0% 56.2%
4035839 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.52 34.0 3.14e-01 74.2% 51.3%
3968389 302.1.1.0 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.52 34.0 3.28e-01 76.4% 59.0%
3376944 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.51 42.0 4.04e-01 91.0% 98.1%
4967222 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.51 34.0 3.90e-01 76.4% 98.3%
4810251 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.50 38.0 2.78e-01 80.9% 39.7%
3264847 2492.1.1.36 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › ODR4-like 0.50 36.0 2.76e-01 75.3% 37.6%
D2 medium residues 96-122_179-203_297-331_379-407
PDB
Domain cluster: representative
D3 medium residues 123-178
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dciA02 1.10.12.10 Mainly Alpha › Orthogonal Bundle › Lyase 2-enoyl-coa Hydratase; Chain A, domain 2 › Lyase 2-enoyl-coa Hydratase, Chain A, domain 2 0.57 39.0 3.77e-01 73.2% 61.9%
D4 medium residues 204-254
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2bgcA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 51.0 4.01e-01 70.6% 30.7%
2va8A03 1.10.3380.30 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.79 53.0 3.45e-01 70.6% 16.7%
1cf7B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 59.0 4.98e-01 82.4% 50.0%
4i2oA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 50.0 4.24e-01 70.6% 46.3%
5hvqC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 50.0 4.00e-01 70.6% 41.8%
5cvrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 47.0 3.96e-01 70.6% 42.9%
4d7kA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 47.0 3.75e-01 70.6% 84.4%
1gkuB06 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.68 52.0 3.62e-01 80.4% 69.9%
2ywrA00 3.40.50.170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain 0.68 48.0 3.18e-01 78.4% 17.7%
4xt1A00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.68 51.0 3.14e-01 80.4% 66.7%
2vlaA03 1.10.10.2090 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.67 48.0 3.75e-01 78.4% 36.7%
7pzaA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 45.0 3.83e-01 70.6% 44.2%
1wj5A01 1.10.10.980 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › CST, Suppressor of Cdc13 homolog, complex subunit STN1, N-terminal domain 0.67 53.0 4.22e-01 86.3% 51.0%
4fymF00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.66 53.0 3.46e-01 86.3% 37.8%
3gwjA02 1.10.1280.10 Mainly Alpha › Orthogonal Bundle › di-copper center containing domain from catechol oxidase › Di-copper center containing domain from catechol oxidase 0.65 48.0 3.07e-01 78.4% 20.2%
3pw3D00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.63 49.0 2.91e-01 84.3% 26.3%
3f5fA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 43.0 2.67e-01 82.4% 38.8%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5029028 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.92 64.0 4.70e-01 72.5% 30.8%
5033203 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.90 58.0 5.14e-01 70.6% 48.6%
5073598 101.1.2.392 alpha arrays › HTH › HTH › winged helix domain › SNRNP200_wHTH 0.90 68.0 5.51e-01 82.4% 45.6%
3943865 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.86 61.0 4.53e-01 78.4% 31.7%
5047215 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.85 59.0 5.80e-01 72.5% 67.3%
3808802 101.1.2.10 alpha arrays › HTH › HTH › winged helix domain › Linker_histone 0.84 55.0 4.82e-01 70.6% 46.7%
5002881 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.83 59.0 4.63e-01 74.5% 39.0%
4991609 101.1.2.178 alpha arrays › HTH › HTH › winged helix domain › HTH_61 0.83 64.0 5.22e-01 82.4% 46.7%
3997738 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.83 55.0 4.56e-01 70.6% 41.2%
3587524 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.82 59.0 4.58e-01 76.5% 38.0%
3830975 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.82 54.0 4.81e-01 70.6% 50.0%
5007853 101.1.2.192 alpha arrays › HTH › HTH › winged helix domain › B_lactamase-like_C 0.81 59.0 5.26e-01 76.5% 69.6%
3984604 7558.1.1.10 a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › GPAT_C 0.81 56.0 4.52e-01 72.5% 38.9%
4231800 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.81 62.0 4.97e-01 82.4% 44.2%
4600309 101.1.2.309 alpha arrays › HTH › HTH › winged helix domain › GPAT_C 0.80 54.0 4.27e-01 72.5% 36.0%
3532208 7558.1.1.10 a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › GPAT_C 0.79 53.0 3.58e-01 72.5% 19.5%
5060609 632.8.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 0.78 60.0 5.23e-01 82.4% 78.7%
5030996 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 57.0 4.31e-01 78.4% 37.5%
4268455 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 51.0 4.24e-01 70.6% 40.0%
4933710 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.77 56.0 3.31e-01 78.4% 11.4%
3187170 101.1.2.160 alpha arrays › HTH › HTH › winged helix domain › BLACT_WH 0.76 54.0 4.61e-01 76.5% 47.5%
5010137 148.1.1.0 alpha arrays › Histone-like › Histone-related › Histone 0.76 55.0 5.18e-01 76.5% 65.0%
4945784 101.1.12.0 alpha arrays › HTH › HTH › HTH motif inserted in other structures 0.74 50.0 5.77e-01 76.5% 100.0%
4010978 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.73 56.0 4.32e-01 82.4% 70.0%
3398316 101.1.2.248 alpha arrays › HTH › HTH › winged helix domain › DUF4777 0.72 47.0 4.03e-01 70.6% 41.2%
4024039 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 54.0 4.30e-01 82.4% 42.9%
4950303 101.1.2.751 alpha arrays › HTH › HTH › winged helix domain › DUF6293_C 0.71 51.0 4.05e-01 76.5% 53.3%
4926960 101.1.2.652 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.71 55.0 3.99e-01 82.4% 71.5%
5012052 101.1.2.652 alpha arrays › HTH › HTH › winged helix domain › Fe_dep_repr_C 0.69 55.0 3.99e-01 84.3% 71.5%
4928324 2005.1.1.12 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1e 0.69 50.0 3.51e-01 76.5% 60.3%
5048340 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 46.0 3.91e-01 82.4% 42.4%
1871577 101.1.2.129 alpha arrays › HTH › HTH › winged helix domain › BpuJI_N 0.67 48.0 3.52e-01 78.4% 28.8%
3646041 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 54.0 4.17e-01 96.1% 91.3%
4181610 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 42.0 3.29e-01 84.3% 47.8%
D5 medium residues 255-296_332-378
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04986.19 best Y2_Tnp 32.5 1.20e-07 55.1% 25.7%
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4rt0A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.59 33.0 3.14e-01 95.5% 45.0%
8adbA01 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.56 38.0 2.98e-01 70.8% 85.5%
2e29A01 3.30.70.2280 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 28.0 3.05e-01 85.4% 57.9%
1vigA00 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.53 33.0 3.62e-01 76.4% 77.5%
3wasA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 40.0 2.67e-01 85.4% 87.9%
1itpA00 3.30.70.80 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Peptidase S8 propeptide/proteinase inhibitor I9 0.51 28.0 2.96e-01 84.3% 59.7%
ECOD (7)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4647210 5.1.3.28 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.56 40.0 2.57e-01 76.4% 100.0%
3605616 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 38.0 3.30e-01 73.0% 55.6%
4947463 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.53 39.0 3.75e-01 94.4% 66.7%
5017309 1.1.15.5 beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › DUF515 0.52 26.0 2.79e-01 85.4% 52.5%
3743770 304.9.1.31 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_9 0.51 26.0 2.71e-01 86.5% 48.2%
4890599 1.1.7.80 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RND-MFP_C 0.51 29.0 3.20e-01 94.4% 69.7%
4928148 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.51 37.0 3.11e-01 95.5% 41.7%