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CAKLQH020000014.1__CAH1087915.1__SAMEA5780036_02199__00026

Bact-Vir

CAKLQH020000014.1__CAH1087915.1__SAMEA5780036_02199__00026

Identity

Kingdom:
phage

Quality

94.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-51
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00453.24 best Ribosomal_L20 57.6 1.70e-15 96.1% 45.8%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2i7uA00 6.10.250.1010 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.70 35.0 3.28e-01 74.5% 37.1%
2lfhA00 4.10.280.10 Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain 0.65 51.0 4.77e-01 92.2% 70.6%
2h1jA00 1.10.1370.30 Mainly Alpha › Orthogonal Bundle › Neurolysin; domain 3 › 0.62 52.0 3.02e-01 100.0% 23.2%
3h36A00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.57 40.0 3.46e-01 72.5% 52.6%
2f2uB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 43.0 2.91e-01 82.4% 91.3%
2gnxA01 1.10.3450.30 Mainly Alpha › Orthogonal Bundle › Hyaluronidase domain-like › 0.53 42.0 3.03e-01 98.0% 67.0%
6idxA01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.52 43.0 2.89e-01 92.2% 34.2%
2cpmA00 3.30.1370.50 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › R3H-like domain 0.51 40.0 3.36e-01 88.2% 79.8%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4622374 143.2.1.1 alpha arrays › PABP domain-like › Ribosomal protein L20 › Ribosomal protein L20 › Ribosomal_L20 1.00 86.0 6.25e-01 90.2% 38.7%
4611939 143.2.1.1 alpha arrays › PABP domain-like › Ribosomal protein L20 › Ribosomal protein L20 › Ribosomal_L20 0.99 86.0 6.39e-01 90.2% 41.8%
3411600 143.2.1.1 alpha arrays › PABP domain-like › Ribosomal protein L20 › Ribosomal protein L20 › Ribosomal_L20 0.99 80.0 5.63e-01 84.3% 33.1%
4596151 143.2.1.1 alpha arrays › PABP domain-like › Ribosomal protein L20 › Ribosomal protein L20 › Ribosomal_L20 0.98 84.0 6.19e-01 90.2% 40.0%
4135698 143.2.1.1 alpha arrays › PABP domain-like › Ribosomal protein L20 › Ribosomal protein L20 › Ribosomal_L20 0.97 83.0 5.99e-01 90.2% 36.8%
3485788 143.2.1.1 alpha arrays › PABP domain-like › Ribosomal protein L20 › Ribosomal protein L20 › Ribosomal_L20 0.97 74.0 5.56e-01 80.4% 37.3%
2849980 143.2.1.0 alpha arrays › PABP domain-like › Ribosomal protein L20 › Ribosomal protein L20 0.92 84.0 6.23e-01 96.1% 43.0%
2755451 143.2.1.1 alpha arrays › PABP domain-like › Ribosomal protein L20 › Ribosomal protein L20 › Ribosomal_L20 0.92 82.0 6.08e-01 96.1% 41.9%
3030421 143.2.1.0 alpha arrays › PABP domain-like › Ribosomal protein L20 › Ribosomal protein L20 0.91 84.0 6.06e-01 98.0% 40.3%
3098385 143.2.1.0 alpha arrays › PABP domain-like › Ribosomal protein L20 › Ribosomal protein L20 0.90 80.0 5.68e-01 98.0% 35.0%
2755607 143.2.1.1 alpha arrays › PABP domain-like › Ribosomal protein L20 › Ribosomal protein L20 › Ribosomal_L20 0.90 80.0 5.67e-01 98.0% 35.0%
3714091 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.64 44.0 3.92e-01 72.5% 97.3%
4191594 109.4.1.337 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Ipi1_N 0.53 44.0 2.68e-01 98.0% 35.8%
3600453 323.1.1.0 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.52 43.0 2.40e-01 96.1% 7.3%
D2 medium residues 52-119
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00453.24 best Ribosomal_L20 84.0 1.10e-23 85.3% 54.2%
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1gyzA00 1.10.1900.20 Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › Ribosomal protein L20, C-terminal domain 0.86 70.0 7.35e-01 86.8% 100.0%
3bj6B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 52.0 3.91e-01 75.0% 68.9%
2gxgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 50.0 3.88e-01 73.5% 74.3%
4rgxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 51.0 3.99e-01 75.0% 72.4%
3fm5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 49.0 3.91e-01 73.5% 73.1%
3bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 49.0 3.83e-01 75.0% 76.3%
3s2wG00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 48.0 3.77e-01 73.5% 74.4%
2qwwC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 47.0 3.74e-01 75.0% 71.0%
4fx0A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 47.0 3.85e-01 75.0% 73.8%
3zmdA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 45.0 3.50e-01 75.0% 73.0%
6p73A02 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.60 44.0 3.42e-01 77.9% 58.0%
4b8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 47.0 3.66e-01 83.8% 70.7%
1o1yA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.60 49.0 3.49e-01 95.6% 95.7%
5ekdA02 1.10.240.10 Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase 0.59 45.0 3.84e-01 80.9% 52.3%
3broD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 51.0 3.94e-01 91.2% 71.6%
2gf4A00 1.20.1270.110 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Uncharacterised protein family UPF0058 0.59 43.0 3.97e-01 77.9% 67.0%
1siqA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.58 42.0 3.26e-01 76.5% 60.0%
2h21A02 3.90.1420.10 Alpha Beta › Alpha-Beta Complex › set domain protein methyltransferase, domain 2 › Rubisco LSMT, substrate-binding domain 0.58 43.0 3.30e-01 80.9% 39.4%
1qdbA02 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.56 42.0 3.38e-01 80.9% 55.9%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 40.0 3.24e-01 75.0% 78.3%
2ivxB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.55 47.0 3.73e-01 95.6% 47.1%
2yg8A01 1.10.1670.40 Mainly Alpha › Orthogonal Bundle › Endonuclease Iii, domain 2 › 0.55 38.0 3.45e-01 73.5% 54.7%
4oe8C00 1.10.8.1170 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.54 42.0 3.88e-01 83.8% 93.1%
1xb2B01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.53 38.0 3.94e-01 97.1% 90.0%
4ip8A00 1.10.132.110 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Serum amyloid A protein 0.53 40.0 3.51e-01 82.4% 89.5%
1a7mA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.52 40.0 3.15e-01 91.2% 76.1%
5e1wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 37.0 2.82e-01 75.0% 67.3%
3mk7A00 1.20.210.10 Mainly Alpha › Up-down Bundle › Cytochrome C Oxidase; Chain A › Cytochrome c oxidase-like, subunit I domain 0.51 42.0 2.65e-01 100.0% 49.4%
3s6jE02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.50 39.0 3.90e-01 83.8% 88.4%
2e87A01 1.20.120.1190 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.50 39.0 3.10e-01 88.2% 63.7%
1li5A02 1.20.120.640 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.50 43.0 3.99e-01 97.1% 96.6%
1qsdA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.50 37.0 3.27e-01 79.4% 100.0%
8ek4A01 1.20.120.20 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein 0.50 39.0 3.13e-01 83.8% 87.2%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4158719 143.2.1.1 alpha arrays › PABP domain-like › Ribosomal protein L20 › Ribosomal protein L20 › Ribosomal_L20 1.00 97.0 7.58e-01 100.0% 54.4%
3646336 143.2.1.1 alpha arrays › PABP domain-like › Ribosomal protein L20 › Ribosomal protein L20 › Ribosomal_L20 1.00 86.0 9.18e-01 88.2% 100.0%
3623864 143.2.1.1 alpha arrays › PABP domain-like › Ribosomal protein L20 › Ribosomal protein L20 › Ribosomal_L20 0.99 94.0 7.41e-01 97.1% 55.0%
3411600 143.2.1.1 alpha arrays › PABP domain-like › Ribosomal protein L20 › Ribosomal protein L20 › Ribosomal_L20 0.98 95.0 7.31e-01 100.0% 52.3%
3098385 143.2.1.0 alpha arrays › PABP domain-like › Ribosomal protein L20 › Ribosomal protein L20 0.98 94.0 7.12e-01 100.0% 48.6%
2755607 143.2.1.1 alpha arrays › PABP domain-like › Ribosomal protein L20 › Ribosomal protein L20 › Ribosomal_L20 0.98 94.0 7.11e-01 100.0% 48.6%
3030421 143.2.1.0 alpha arrays › PABP domain-like › Ribosomal protein L20 › Ribosomal protein L20 0.97 94.0 7.36e-01 100.0% 54.8%
3485788 143.2.1.1 alpha arrays › PABP domain-like › Ribosomal protein L20 › Ribosomal protein L20 › Ribosomal_L20 0.97 93.0 7.61e-01 100.0% 62.7%
2979123 143.2.1.0 alpha arrays › PABP domain-like › Ribosomal protein L20 › Ribosomal protein L20 0.96 88.0 7.06e-01 95.6% 55.6%
4622374 143.2.1.1 alpha arrays › PABP domain-like › Ribosomal protein L20 › Ribosomal protein L20 › Ribosomal_L20 0.96 91.0 7.28e-01 100.0% 57.1%
2755451 143.2.1.1 alpha arrays › PABP domain-like › Ribosomal protein L20 › Ribosomal protein L20 › Ribosomal_L20 0.95 89.0 7.16e-01 98.5% 57.3%
3596610 143.2.1.0 alpha arrays › PABP domain-like › Ribosomal protein L20 › Ribosomal protein L20 0.92 88.0 6.93e-01 100.0% 54.4%
4808075 143.2.1.1 alpha arrays › PABP domain-like › Ribosomal protein L20 › Ribosomal protein L20 › Ribosomal_L20 0.92 86.0 6.92e-01 100.0% 55.7%
3233823 143.2.1.1 alpha arrays › PABP domain-like › Ribosomal protein L20 › Ribosomal protein L20 › Ribosomal_L20 0.92 86.0 6.94e-01 100.0% 57.5%
4596151 143.2.1.1 alpha arrays › PABP domain-like › Ribosomal protein L20 › Ribosomal protein L20 › Ribosomal_L20 0.91 85.0 6.94e-01 98.5% 60.0%
4135698 143.2.1.1 alpha arrays › PABP domain-like › Ribosomal protein L20 › Ribosomal protein L20 › Ribosomal_L20 0.91 85.0 6.77e-01 100.0% 56.8%
4611939 143.2.1.1 alpha arrays › PABP domain-like › Ribosomal protein L20 › Ribosomal protein L20 › Ribosomal_L20 0.91 80.0 6.67e-01 94.1% 58.2%
3351443 143.2.1.1 alpha arrays › PABP domain-like › Ribosomal protein L20 › Ribosomal protein L20 › Ribosomal_L20 0.89 82.0 7.57e-01 100.0% 83.5%
3956277 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.74 53.0 4.05e-01 75.0% 72.7%
3287587 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.72 51.0 3.91e-01 73.5% 73.6%
143631 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.68 48.0 3.67e-01 73.5% 70.5%
5010194 101.1.2.231 alpha arrays › HTH › HTH › winged helix domain › Staph_reg_Sar_Rot 0.67 48.0 3.82e-01 75.0% 77.0%
3910222 103.1.1.17 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA_6 0.66 46.0 5.15e-01 94.1% 100.0%
3279462 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.65 46.0 3.59e-01 75.0% 73.1%
3971712 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.63 45.0 3.65e-01 75.0% 81.5%
3449999 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.61 54.0 4.40e-01 100.0% 79.2%
4349607 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.60 42.0 3.64e-01 75.0% 99.1%
3573589 632.22.1.1 alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › EzrA 0.58 44.0 3.92e-01 82.4% 90.0%
3582407 103.1.1.22 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › ARI1_UBAl 0.58 47.0 4.71e-01 98.5% 90.0%
4016635 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.56 35.0 3.01e-01 92.6% 43.0%
3281672 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.55 43.0 3.17e-01 89.7% 45.0%
3285904 101.1.4.18 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_31 0.54 43.0 3.84e-01 85.3% 65.3%
3699782 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.53 40.0 3.49e-01 79.4% 88.0%
3957632 150.5.1.53 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like › PPE 0.53 34.0 2.89e-01 91.2% 40.9%
3494616 4106.1.1.1 few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.52 35.0 3.22e-01 91.2% 55.3%
4207520 6056.1.1.2 alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N 0.51 41.0 4.03e-01 89.7% 93.3%
3880841 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.50 39.0 2.91e-01 85.3% 78.3%