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CAKLQH020000015.1__CAH1088798.1__SAMEA5780036_02314__00053

Bact-Vir

CAKLQH020000015.1__CAH1088798.1__SAMEA5780036_02314__00053

Identity

Kingdom:
phage

Quality

90.4 mean pLDDT

Cluster

View cluster (17 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 4-121
PDB
Domain cluster: rep: MN604230.1__QGF21724.1__Sam112_gp20__00020__D22-108
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF18352.8 best Gp138_N 29.3 9.20e-07 83.9% 70.4%
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3qr8A01 2.40.50.230 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Gp5 N-terminal domain 0.84 54.0 6.34e-01 93.2% 91.7%
3pqiA01 2.40.50.230 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Gp5 N-terminal domain 0.75 51.0 6.08e-01 86.4% 100.0%
5aj3Q00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.71 46.0 4.78e-01 88.1% 70.6%
4uhvA04 2.40.50.230 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Gp5 N-terminal domain 0.70 51.0 5.48e-01 90.7% 86.4%
4rg1A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 38.0 4.88e-01 89.0% 96.9%
1b3qA04 2.40.50.180 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › CheA-289, Domain 4 0.62 34.0 4.36e-01 84.7% 98.4%
2ba0A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 40.0 4.59e-01 88.1% 90.8%
1jb3A00 2.40.50.120 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 41.0 4.08e-01 86.4% 74.8%
3bdlA02 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 40.0 3.70e-01 88.1% 61.0%
2k5wA00 2.40.50.480 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Protein of unknown function DUF1093 0.52 37.0 3.84e-01 94.9% 78.4%
6gmhH01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 42.0 3.93e-01 86.4% 98.6%
2k5dA01 2.40.50.390 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Conjugative transposon protein, DUF961 0.50 38.0 3.94e-01 86.4% 86.2%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3948035 2.1.1.96 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Gp138_N 0.93 87.0 7.02e-01 96.6% 58.0%
3075885 2.1.1.96 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Gp138_N 0.89 71.0 7.33e-01 83.1% 87.4%
3980538 2.7.1.1 ↗ beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.88 51.0 6.32e-01 84.7% 90.7%
3946740 2.7.1.1 ↗ beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.83 56.0 6.40e-01 97.5% 90.0%
1731165 2.7.1.1 ↗ beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.83 55.0 6.34e-01 96.6% 89.9%
2468517 2.7.1.1 ↗ beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.76 50.0 4.26e-01 88.1% 43.8%
185474 2.1.1.96 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Gp138_N 0.75 51.0 5.92e-01 86.4% 94.3%
4218525 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.74 41.0 5.42e-01 87.3% 100.0%
3169095 2.1.1.4 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 0.71 45.0 5.29e-01 87.3% 89.4%
3266828 2.1.1.4 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_S17 0.70 44.0 4.51e-01 86.4% 65.2%
4448208 2.1.1.18 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.67 35.0 4.75e-01 86.4% 100.0%
5047472 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 37.0 4.76e-01 87.3% 96.9%
4230617 2.1.1.100 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 0.66 40.0 4.85e-01 86.4% 95.9%
3623333 2.1.1.18 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.65 39.0 4.45e-01 87.3% 79.5%
4411162 2.1.1.100 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 0.65 39.0 4.81e-01 88.1% 96.0%
3703130 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 39.0 4.82e-01 82.2% 96.0%
4937878 2.3.1.0 ↗ beta barrels › OB-fold › TIMP-like › TIMP-like 0.61 39.0 4.47e-01 83.9% 89.4%
3997678 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 45.0 4.68e-01 91.5% 84.5%
3490807 2.1.1.18 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM 0.60 36.0 3.16e-01 83.9% 41.4%
4567919 2.1.1.224 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29084 0.58 35.0 3.65e-01 88.1% 64.5%
3185697 1.1.7.10 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Flavokinase 0.55 40.0 3.40e-01 74.6% 83.6%
3266078 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 35.0 4.00e-01 85.6% 97.6%