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CAKLQH020000015.1__CAH1089041.1__SAMEA5780036_02407__00146

Bact-Vir

CAKLQH020000015.1__CAH1089041.1__SAMEA5780036_02407__00146

Identity

Kingdom:
phage

Quality

93.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 9-72
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24749.3 best DUF7695 56.6 2.50e-15 92.2% 96.5%
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1x31C02 3.30.70.1520 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Heterotetrameric sarcosine oxidase 0.59 48.0 4.56e-01 92.2% 83.7%
1tpmA00 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.58 38.0 4.20e-01 71.9% 88.0%
4pofA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.57 42.0 4.54e-01 92.2% 100.0%
2k2dA00 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.56 33.0 3.78e-01 87.5% 80.9%
4n0rA03 2.60.40.3950 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 45.0 3.81e-01 96.9% 52.7%
3qpbF00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.55 40.0 2.86e-01 84.4% 98.8%
2e5yA01 2.60.15.10 Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal 0.55 41.0 3.77e-01 82.8% 95.5%
6iikB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.55 47.0 2.99e-01 98.4% 20.7%
1rwzA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.54 38.0 2.63e-01 75.0% 95.1%
1b77A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.54 37.0 2.57e-01 71.9% 94.3%
1u7bA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.52 38.0 2.60e-01 79.7% 98.0%
1e88A03 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.51 32.0 3.64e-01 71.9% 95.2%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3772640 10.21.1.1 beta sandwiches › jelly-roll › Jelly-roll domain in ADAMTS13 › Jelly-roll domain in ADAMTS13 › ADAMTS_spacer1 0.65 54.0 4.44e-01 96.9% 54.4%
3999968 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.56 32.0 3.82e-01 73.4% 90.0%
3895936 11.1.1.99 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.55 45.0 3.86e-01 96.9% 84.3%
4101475 56.1.1.1 beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › Epsilon subunit of F1F0-ATP synthase-N › Epsilon subunit of F1F0-ATP synthase-N › ATP-synt_DE_N 0.54 40.0 3.71e-01 81.2% 98.8%
3888093 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 44.0 3.99e-01 95.3% 65.6%
4635165 56.1.1.1 beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › Epsilon subunit of F1F0-ATP synthase-N › Epsilon subunit of F1F0-ATP synthase-N › ATP-synt_DE_N 0.54 39.0 3.67e-01 81.2% 97.6%
4070271 56.1.1.1 beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › Epsilon subunit of F1F0-ATP synthase-N › Epsilon subunit of F1F0-ATP synthase-N › ATP-synt_DE_N 0.54 40.0 3.76e-01 84.4% 98.8%
4034575 56.1.1.1 beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › Epsilon subunit of F1F0-ATP synthase-N › Epsilon subunit of F1F0-ATP synthase-N › ATP-synt_DE_N 0.53 40.0 3.74e-01 85.9% 100.0%
4933103 375.1.1.58 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB 0.52 42.0 4.34e-01 100.0% 98.3%
4980762 2003.1.1.386 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › Sacchrp_dh_C 0.51 36.0 2.37e-01 79.7% 22.7%
D2 medium residues 75-128
PDB
Domain cluster: representative
CATH (39)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7dklA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 52.0 4.01e-01 94.4% 30.7%
1u6gC00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.77 47.0 2.50e-01 70.4% 2.9%
7txnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 48.0 3.99e-01 72.2% 38.9%
2l02A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 48.0 4.18e-01 70.4% 45.1%
1wj5A01 1.10.10.980 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › CST, Suppressor of Cdc13 homolog, complex subunit STN1, N-terminal domain 0.70 51.0 4.20e-01 77.8% 49.0%
3wxyA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.70 40.0 2.88e-01 70.4% 19.5%
3l09A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 48.0 4.10e-01 72.2% 50.0%
3cuqB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 47.0 4.32e-01 75.9% 55.1%
1go4A00 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.69 49.0 3.30e-01 74.1% 25.5%
1bvyB00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.68 50.0 2.98e-01 79.6% 27.2%
4mbsA00 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.68 46.0 2.76e-01 70.4% 12.1%
2jscB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 46.0 4.01e-01 70.4% 47.5%
3bjoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 54.0 4.24e-01 85.2% 68.0%
4hs5A00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.63 48.0 3.88e-01 83.3% 94.3%
4b8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 47.0 3.51e-01 81.5% 75.7%
3jamK00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 46.0 3.79e-01 79.6% 67.7%
8d3mA02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.61 46.0 2.98e-01 79.6% 34.2%
3o8oF01 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.61 42.0 2.79e-01 74.1% 19.1%
2a07J00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 40.0 3.52e-01 70.4% 44.6%
1mukA02 3.90.1850.10 Alpha Beta › Alpha-Beta Complex › RNA-directed RNA polymerase lambda-3 › RNA-directed RNA polymerase lambda-3 0.59 45.0 2.59e-01 81.5% 59.2%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 50.0 3.85e-01 90.7% 45.0%
4uhiA01 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.58 49.0 2.92e-01 96.3% 30.6%
2zdiB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 49.0 3.85e-01 90.7% 46.2%
1zcdA00 1.20.1530.10 Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › Na+/H+ antiporter like domain 0.58 50.0 3.04e-01 100.0% 75.5%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 48.0 3.49e-01 90.7% 55.3%
5xyiK00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 41.0 3.53e-01 75.9% 68.9%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 48.0 3.57e-01 96.3% 57.1%
4p16A02 1.10.8.1190 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Papain-like viral protease, thumb domain 0.56 40.0 3.08e-01 77.8% 60.6%
2ntxA01 1.20.58.2010 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › PRONE domain, subdomain 1 0.55 47.0 3.14e-01 96.3% 54.8%
4r24B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.54 40.0 3.51e-01 79.6% 82.4%
1t6sA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 43.0 3.64e-01 85.2% 54.7%
2z99A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 44.0 3.82e-01 92.6% 60.9%
3ossD00 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.53 37.0 2.61e-01 72.2% 57.3%
1s7hA02 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 40.0 3.58e-01 85.2% 82.9%
3u1nB01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.53 36.0 2.30e-01 100.0% 12.2%
4i98C01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 42.0 3.78e-01 87.0% 62.7%
3fzqA02 3.30.1240.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › 0.52 37.0 2.92e-01 75.9% 36.5%
2v1nA01 1.10.10.2030 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › DNA/RNA-binding protein Kin17, conserved domain 0.51 35.0 2.94e-01 70.4% 42.6%
3w6kC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 40.0 3.42e-01 87.0% 54.0%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3996360 109.2.1.5 alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Trehalase 0.84 47.0 2.79e-01 74.1% 9.1%
3876302 101.1.2.206 alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH 0.78 54.0 4.27e-01 72.2% 40.0%
4018469 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 53.0 4.22e-01 72.2% 37.1%
None 0.76 57.0 4.97e-01 85.2% 53.8%
4968601 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 55.0 4.38e-01 75.9% 40.0%
4506359 101.1.2.751 alpha arrays › HTH › HTH › winged helix domain › DUF6293_C 0.75 54.0 4.63e-01 75.9% 48.2%
3829353 101.1.2.641 alpha arrays › HTH › HTH › winged helix domain › eWH_GTF3C1, DUF7647 0.75 55.0 3.15e-01 77.8% 31.9%
3593339 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.74 52.0 4.00e-01 98.1% 34.8%
4995244 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.74 50.0 3.85e-01 70.4% 51.8%
4955611 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.73 49.0 3.90e-01 72.2% 36.5%
5041526 101.1.2.54 alpha arrays › HTH › HTH › winged helix domain › Penicillinase_R 0.72 49.0 4.75e-01 70.4% 63.3%
5035263 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.71 49.0 3.86e-01 70.4% 36.2%
4939108 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.71 43.0 4.12e-01 70.4% 50.8%
4977549 101.1.2.78 alpha arrays › HTH › HTH › winged helix domain › AlkZ-like 0.71 50.0 4.57e-01 79.6% 57.1%
5038557 101.1.2.934 alpha arrays › HTH › HTH › winged helix domain › HVO_A0261_N 0.70 48.0 3.90e-01 70.4% 38.0%
3672413 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 49.0 4.06e-01 74.1% 48.9%
4961224 101.1.2.78 alpha arrays › HTH › HTH › winged helix domain › AlkZ-like 0.68 47.0 4.35e-01 77.8% 55.7%
4009409 109.4.1.2353 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HemY_N, TPR_2 0.67 60.0 3.58e-01 100.0% 25.6%
5051754 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.67 47.0 4.14e-01 74.1% 53.8%
4953302 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.67 46.0 3.92e-01 70.4% 44.7%
4862320 101.1.2.47 alpha arrays › HTH › HTH › winged helix domain › S10_plectin 0.67 46.0 3.80e-01 72.2% 49.0%
3495503 2005.1.1.29 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1g 0.66 48.0 3.21e-01 77.8% 38.1%
4962699 101.1.2.924 alpha arrays › HTH › HTH › winged helix domain › DUF7342 0.66 46.0 3.22e-01 87.0% 24.2%
3881031 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.63 44.0 2.82e-01 74.1% 16.2%
3614763 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.62 49.0 3.67e-01 90.7% 37.5%
3628456 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.62 49.0 3.57e-01 83.3% 37.5%
5027879 304.120.1.6 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer 0.61 47.0 4.11e-01 79.6% 57.3%
3786162 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.60 52.0 4.15e-01 90.7% 54.7%
3755415 2484.1.1.236 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27940 0.60 50.0 3.27e-01 88.9% 48.1%
5041715 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.59 50.0 3.83e-01 88.9% 55.5%
4017372 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.59 50.0 3.83e-01 90.7% 42.6%
3712081 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.59 51.0 3.89e-01 90.7% 44.5%
3579472 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.58 49.0 3.61e-01 90.7% 37.7%
3550136 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.58 49.0 3.75e-01 90.7% 42.6%
3394225 192.2.1.1 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.56 47.0 3.62e-01 90.7% 42.6%
5057781 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.56 43.0 3.76e-01 87.0% 55.0%
4940513 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.56 44.0 3.67e-01 85.2% 50.0%
4990030 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 40.0 2.66e-01 74.1% 17.5%
3586847 101.1.2.66 alpha arrays › HTH › HTH › winged helix domain › Mga 0.53 36.0 3.22e-01 72.2% 52.5%
4563894 101.1.2.55 alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB 0.52 43.0 3.77e-01 92.6% 62.4%
3593666 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.51 37.0 3.80e-01 79.6% 90.4%