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CAKLQH020000033.1__CAH1094658.1__SAMEA5780036_03357__00001

Bact-Vir

CAKLQH020000033.1__CAH1094658.1__SAMEA5780036_03357__00001

Identity

Kingdom:
phage

Quality

87.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-66
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06719.20 best AraC_N 73.5 2.00e-20 100.0% 42.0%
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3d82A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.86 59.0 5.01e-01 78.8% 46.1%
2pytA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.85 59.0 4.66e-01 80.3% 37.5%
3lwcA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.84 61.0 5.15e-01 81.8% 48.5%
3fjsC00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.83 58.0 4.87e-01 80.3% 44.9%
2ozjA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.82 58.0 4.87e-01 81.8% 45.0%
1qwrA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.81 55.0 4.90e-01 80.3% 51.7%
3myxA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.81 59.0 4.85e-01 83.3% 44.3%
2wfpA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.80 54.0 4.68e-01 78.8% 46.9%
2vpvA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.79 59.0 5.21e-01 83.3% 55.3%
4e2gC00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.78 55.0 4.44e-01 80.3% 38.9%
5zbeA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.78 59.0 5.03e-01 86.4% 50.5%
4hslA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.77 57.0 4.18e-01 78.8% 31.3%
1vj2A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.76 55.0 4.57e-01 80.3% 43.9%
1sfnA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.76 63.0 4.19e-01 89.4% 69.4%
5cadA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.76 57.0 4.08e-01 81.8% 29.0%
1o4tA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.75 55.0 4.54e-01 81.8% 44.3%
4lejA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.75 57.0 4.14e-01 81.8% 31.5%
1y9qA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.75 54.0 4.84e-01 83.3% 54.8%
1v70A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.74 53.0 4.56e-01 80.3% 47.6%
5j7mA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.74 62.0 5.14e-01 98.5% 51.6%
1sefA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.74 56.0 4.61e-01 87.9% 45.4%
4n2kA01 2.60.40.1860 Mainly Beta › Sandwich › Immunoglobulin-like › Protein-arginine deiminase, N-terminal domain 0.70 54.0 4.53e-01 86.4% 52.1%
6nwmA01 2.60.120.280 Mainly Beta › Sandwich › Jelly Rolls › Regulatory protein AraC 0.67 59.0 4.48e-01 100.0% 72.9%
6l4cA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.65 54.0 3.95e-01 92.4% 68.5%
3nsjA02 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.61 46.0 3.79e-01 83.3% 84.4%
2xi9B01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 45.0 3.85e-01 78.8% 80.4%
6v55A01 2.60.120.290 Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain 0.60 47.0 4.04e-01 87.9% 64.3%
4dmiA02 2.60.120.1010 Mainly Beta › Sandwich › Jelly Rolls › 0.60 45.0 3.66e-01 84.8% 65.0%
2pn5A08 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.58 44.0 3.82e-01 84.8% 55.9%
3nngA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 43.0 3.43e-01 83.3% 54.9%
2nq3A00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.58 42.0 3.49e-01 80.3% 90.8%
3kwuA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.56 40.0 3.37e-01 81.8% 93.3%
2dmhA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.55 40.0 3.24e-01 78.8% 83.6%
2uy6C01 2.60.40.1090 Mainly Beta › Sandwich › Immunoglobulin-like › Fimbrial-type adhesion domain 0.55 40.0 3.27e-01 81.8% 58.5%
4npjB01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.55 42.0 3.42e-01 87.9% 80.7%
4icwA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.54 41.0 3.43e-01 86.4% 92.3%
4npjB02 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.54 39.0 3.24e-01 83.3% 76.1%
1yq5A00 2.60.120.670 Mainly Beta › Sandwich › Jelly Rolls › Minor capsid protein. 0.53 39.0 3.20e-01 81.8% 54.9%
4h3wA02 2.60.120.1260 Mainly Beta › Sandwich › Jelly Rolls › 0.53 41.0 3.26e-01 89.4% 61.8%
2ep6A01 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.52 38.0 3.27e-01 81.8% 93.4%
2q9kA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 37.0 2.98e-01 77.3% 51.0%
4f23A02 3.90.209.20 Alpha Beta › Alpha-Beta Complex › Hemagglutinin (Ha1 Chain); Chain: A; domain 1 › Haemagglutinin, alpha/beta domain, HA1 chain 0.52 43.0 3.08e-01 97.0% 41.1%
4nn5C01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 38.0 3.58e-01 84.8% 84.5%
2ox5B00 2.60.40.2470 Mainly Beta › Sandwich › Immunoglobulin-like › SoxY domain 0.50 34.0 2.97e-01 84.8% 42.7%
3jzyA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.50 44.0 3.62e-01 100.0% 72.6%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3967885 10.12.1.81 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_N 0.95 89.0 6.20e-01 100.0% 36.2%
3943882 10.12.1.81 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_N 0.94 88.0 6.19e-01 100.0% 36.7%
4004630 10.12.1.81 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_N 0.91 84.0 5.82e-01 100.0% 34.2%
5051145 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.84 58.0 4.80e-01 78.8% 42.7%
3618626 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.84 60.0 5.32e-01 80.3% 54.4%
4008317 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.83 72.0 5.54e-01 100.0% 43.4%
4962210 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.82 59.0 4.90e-01 80.3% 45.5%
4936740 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.80 57.0 5.68e-01 80.3% 71.4%
3973252 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.80 58.0 4.81e-01 81.8% 44.7%
4649270 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.79 55.0 5.42e-01 80.3% 68.6%
3287407 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.79 57.0 5.01e-01 80.3% 52.6%
3284076 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.79 56.0 4.13e-01 80.3% 29.7%
4177953 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.79 71.0 5.39e-01 100.0% 44.7%
4101142 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.78 60.0 6.09e-01 87.9% 84.6%
3957537 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.77 55.0 4.71e-01 80.3% 47.6%
5018960 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.76 55.0 4.43e-01 80.3% 40.0%
4025507 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.73 54.0 5.25e-01 81.8% 70.7%
3280944 10.12.1.39 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.68 56.0 4.50e-01 93.9% 47.2%
3173127 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.66 56.0 4.34e-01 97.0% 91.6%
4592983 10.12.1.0 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.66 58.0 4.36e-01 100.0% 68.5%
3305382 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.66 57.0 4.50e-01 100.0% 87.6%
3418594 10.32.1.199 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF642 0.64 47.0 3.44e-01 78.8% 42.2%
4217963 10.32.1.19 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PPC 0.63 45.0 4.00e-01 78.8% 67.6%
3644643 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.61 51.0 3.88e-01 95.5% 93.9%
3629773 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.61 51.0 4.02e-01 97.0% 85.3%
4027864 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.59 46.0 3.62e-01 86.4% 88.0%
1291980 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.59 50.0 4.03e-01 100.0% 91.5%
3489211 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.58 45.0 3.80e-01 86.4% 67.5%
3502042 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.58 45.0 3.59e-01 86.4% 85.0%
3264380 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.57 42.0 3.48e-01 81.8% 91.5%
5055870 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 42.0 3.31e-01 78.8% 65.2%
5020148 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.57 37.0 2.90e-01 84.8% 28.1%
4030329 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.57 42.0 3.45e-01 83.3% 88.9%
3474017 11.2.1.17 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › NT-C2 0.57 42.0 3.24e-01 81.8% 86.5%
3886507 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.56 44.0 3.45e-01 87.9% 78.7%
3351582 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.56 47.0 3.84e-01 100.0% 96.4%
3529332 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.56 43.0 3.48e-01 86.4% 85.7%
3390096 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.56 42.0 3.46e-01 81.8% 90.4%
384273 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.56 41.0 3.38e-01 81.8% 93.3%
3919262 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.56 46.0 3.63e-01 100.0% 81.9%
3571208 11.2.1.43 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2+FerI 0.56 43.0 3.38e-01 86.4% 85.3%
4676174 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.55 40.0 3.10e-01 78.8% 93.1%
3494635 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.55 41.0 3.25e-01 83.3% 74.2%
3471002 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.55 40.0 2.75e-01 81.8% 40.0%
3820073 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.54 40.0 3.13e-01 84.8% 89.1%
3609423 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.54 39.0 3.34e-01 81.8% 91.1%
3666879 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.53 43.0 3.27e-01 89.4% 74.5%
4015002 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.53 40.0 3.28e-01 83.3% 86.7%
3327951 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.53 43.0 3.27e-01 89.4% 73.3%
3884006 11.1.1.1013 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26755 0.52 34.0 3.20e-01 86.4% 52.9%
3937893 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.52 40.0 3.11e-01 86.4% 80.0%
3653711 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.51 39.0 2.87e-01 98.5% 28.5%
D2 medium residues 67-124
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06719.20 best AraC_N 65.4 6.10e-18 98.3% 34.7%
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3k6tB00 1.20.5.4010 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.83 58.0 6.28e-01 72.4% 85.7%
4l9pA00 1.25.40.120 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Protein prenylyltransferase 0.73 50.0 3.10e-01 72.4% 13.1%
2hroA02 1.10.274.10 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › PtsI, HPr-binding domain 0.70 53.0 4.16e-01 82.8% 93.0%
3ckcA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.68 49.0 3.47e-01 75.9% 39.5%
3ls1A00 1.20.120.290 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle 0.68 53.0 4.12e-01 87.9% 85.0%
1xfiA02 1.20.1700.10 Mainly Alpha › Up-down Bundle › AF1104-like › AF1104-like 0.65 46.0 4.00e-01 75.9% 53.3%
3ayhA00 1.20.1250.40 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › RNA Polymerase II, Rpb4 subunit 0.63 44.0 3.40e-01 72.4% 87.3%
1tw9F02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.63 44.0 3.68e-01 77.6% 45.6%
1vwxQ00 3.100.10.10 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › 0.63 40.0 2.83e-01 70.7% 19.8%
4tquQ02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.62 46.0 3.07e-01 84.5% 65.3%
4g9qA00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.60 40.0 2.74e-01 70.7% 17.6%
2co9A00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.60 43.0 3.57e-01 75.9% 61.8%
1aroP02 1.10.287.260 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.60 41.0 4.45e-01 72.4% 87.2%
6qs7C01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 41.0 3.27e-01 75.9% 40.2%
3mzkB03 1.20.58.940 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 39.0 3.73e-01 75.9% 60.0%
4r9pA00 2.60.200.10 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.56 46.0 3.22e-01 96.6% 77.6%
1z1nX01 3.90.10.10 Alpha Beta › Alpha-Beta Complex › Cytochrome C3 › Cytochrome C3 0.55 40.0 3.43e-01 79.3% 56.6%
4d6wB02 6.10.140.740 Special › Helix non-globular › Helix Hairpins › 0.54 42.0 3.72e-01 89.7% 73.9%
1ul7A00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.51 43.0 3.67e-01 100.0% 87.3%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3943882 10.12.1.81 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_N 0.90 85.0 5.74e-01 100.0% 33.9%
3967885 10.12.1.81 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_N 0.90 85.0 5.72e-01 100.0% 31.9%
3948822 10.12.1.81 beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › AraC_N 0.86 77.0 5.33e-01 100.0% 32.0%
4203259 109.21.1.4 alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Sec16_C,Sec16 0.83 54.0 3.17e-01 70.7% 9.6%
3356293 192.4.1.22 alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › PF26575 0.82 58.0 5.81e-01 74.1% 73.3%
4536670 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.82 57.0 4.29e-01 72.4% 48.5%
3814401 109.4.1.420 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR 0.81 56.0 3.29e-01 74.1% 10.0%
4949979 605.1.1.2 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › H-kinase_dim 0.80 56.0 5.44e-01 74.1% 69.2%
3381592 2486.1.1.6 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › ACCA 0.80 57.0 3.50e-01 75.9% 79.1%
5016327 605.1.1.2 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › H-kinase_dim 0.79 56.0 5.26e-01 74.1% 78.6%
None 0.75 58.0 3.96e-01 84.5% 85.5%
3512028 5001.1.1.5 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 0.73 63.0 4.10e-01 100.0% 81.1%
None 0.71 54.0 3.66e-01 82.8% 34.3%
4887715 568.1.1.4 few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related › CHCH 0.71 48.0 4.09e-01 70.7% 45.2%
4278665 140.1.1.11 alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › DALR_1 0.70 53.0 3.62e-01 82.8% 34.8%
4622191 192.29.1.258 alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › BREX_BrxC_4th 0.70 53.0 3.78e-01 84.5% 68.1%
3705344 192.31.1.0 alpha bundles › Long alpha-hairpin › CP12 › CP12 0.69 51.0 5.13e-01 81.0% 78.3%
3212644 568.1.1.4 few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related › CHCH 0.67 48.0 4.05e-01 77.6% 46.0%
3876353 109.4.1.95 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_2 0.66 50.0 3.71e-01 93.1% 33.6%
3596054 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 42.0 2.69e-01 74.1% 17.9%
3414696 109.4.1.192 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.60 50.0 3.36e-01 91.4% 35.7%
4077305 5069.1.3.3 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › Fumarate_red_D 0.59 46.0 3.67e-01 87.9% 44.8%
3932843 109.3.1.96 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 0.59 43.0 2.73e-01 77.6% 16.9%
3475625 524.1.1.8 alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › RabGAP-TBC, RabGap-TBC_2 0.59 40.0 2.79e-01 72.4% 22.7%
4060748 3686.1.1.1 alpha arrays › Nitrile hydratase subunit beta N-termial domain › Nitrile hydratase subunit beta N-termial domain › Nitrile hydratase subunit beta N-termial domain › NHase_beta_N 0.59 42.0 3.61e-01 75.9% 55.8%
4212379 862.1.1.0 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain 0.56 40.0 2.64e-01 74.1% 52.5%
None 0.56 39.0 2.91e-01 75.9% 99.4%
3625711 7579.1.1.6 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_1 0.55 40.0 2.50e-01 79.3% 63.8%
3722207 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.54 36.0 2.37e-01 70.7% 23.9%
3657434 5.1.4.15 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RPE65 0.52 41.0 2.47e-01 96.6% 81.2%
3656669 207.1.1.245 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6, LRR_At5g56370, DUF7885 0.52 39.0 2.29e-01 89.7% 77.5%
D3 medium residues 137-240
PDB
Pfam (3)
AccessionNameScoreE-valueQ covHMM cov
PF12833.14 best HTH_18 78.2 6.40e-22 76.9% 95.0%
PF00165.30 HTH_AraC 33.4 5.40e-08 40.4% 97.6%
PF00165.30 HTH_AraC 26.7 6.80e-06 33.7% 57.1%
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3w6vA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.94 89.0 8.71e-01 99.0% 92.8%
3oioA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.90 85.0 8.25e-01 99.0% 92.0%
6xiuA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.90 82.0 8.38e-01 99.0% 99.0%
2k9sA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.89 84.0 8.32e-01 99.0% 97.2%
4fe7A03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.87 81.0 7.95e-01 99.0% 94.5%
3mn2A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.86 80.0 7.88e-01 99.0% 97.2%
3mklA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.85 80.0 8.02e-01 99.0% 99.0%
2o3fA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 46.0 5.06e-01 74.0% 82.9%
1j1vA00 1.10.1750.10 Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain 0.71 41.0 4.36e-01 83.7% 63.8%
3iwfB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 48.0 5.12e-01 76.9% 82.0%
2lvsA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 33.0 4.26e-01 76.0% 91.1%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 45.0 4.10e-01 75.0% 61.7%
2oi8A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.62 54.0 4.42e-01 99.0% 62.6%
2qtqB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.60 51.0 4.21e-01 95.2% 65.5%
1n00A03 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.60 35.0 4.08e-01 78.8% 82.2%
1hw1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 39.0 4.46e-01 89.4% 93.3%
3vuqB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.57 49.0 4.18e-01 96.2% 69.3%
3c07B00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.57 48.0 3.94e-01 97.1% 87.4%
6dewA01 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 50.0 4.12e-01 99.0% 72.1%
2i2oA00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.56 48.0 3.93e-01 99.0% 69.7%
3vibA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 47.0 3.89e-01 95.2% 63.7%
2uxuB00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 47.0 3.91e-01 99.0% 66.8%
2x4hA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 42.0 3.91e-01 79.8% 98.4%
2qwtA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.55 48.0 4.16e-01 100.0% 77.8%
2rasA01 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.54 46.0 3.90e-01 98.1% 66.0%
3iuoA00 1.10.10.1390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ATP-dependent DNA helicase RecQ 0.53 42.0 4.12e-01 81.7% 100.0%
2dg7A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.51 44.0 3.74e-01 100.0% 82.3%
2f4mA01 3.10.620.30 Alpha Beta › Roll › C8orf32 fold › 0.50 37.0 2.90e-01 77.9% 46.5%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3964894 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.97 91.0 9.33e-01 98.1% 100.0%
4009674 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.97 91.0 8.92e-01 97.1% 91.8%
None 0.96 89.0 9.16e-01 96.2% 100.0%
4030908 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.96 50.0 5.98e-01 99.0% 73.3%
4590066 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.96 93.0 8.97e-01 100.0% 92.9%
4004617 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.96 92.0 8.80e-01 99.0% 90.4%
None 0.96 89.0 9.12e-01 96.2% 100.0%
3968254 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.95 84.0 8.86e-01 92.3% 100.0%
4211867 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.95 89.0 8.74e-01 97.1% 91.8%
4193366 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.95 90.0 8.86e-01 99.0% 93.6%
3944639 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.94 88.0 8.89e-01 98.1% 98.1%
3945925 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.94 87.0 8.87e-01 97.1% 100.0%
4497103 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.93 89.0 8.94e-01 100.0% 99.0%
3975658 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.93 76.0 8.20e-01 88.5% 97.8%
3981026 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.93 88.0 8.82e-01 99.0% 98.1%
3973662 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.92 84.0 8.65e-01 96.2% 100.0%
3976759 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.92 84.0 8.62e-01 96.2% 100.0%
3976262 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.92 87.0 8.39e-01 100.0% 90.4%
3972412 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.91 85.0 8.34e-01 98.1% 96.4%
4123831 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.91 85.0 8.09e-01 100.0% 85.8%
3956897 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.91 85.0 8.54e-01 99.0% 98.1%
4107953 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.91 86.0 8.15e-01 100.0% 89.2%
3972910 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.91 56.0 7.08e-01 95.2% 100.0%
3972891 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.90 82.0 8.39e-01 98.1% 100.0%
3513766 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.90 85.0 7.88e-01 100.0% 83.2%
3945505 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.90 85.0 8.07e-01 100.0% 87.4%
4539758 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.89 83.0 7.89e-01 100.0% 85.8%
3283340 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.89 81.0 8.00e-01 97.1% 91.8%
3949057 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.89 83.0 8.32e-01 99.0% 99.0%
4374806 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.88 82.0 6.62e-01 99.0% 57.3%
3968456 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.88 80.0 7.94e-01 98.1% 93.5%
4010677 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.88 80.0 8.19e-01 98.1% 100.0%
3964790 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.88 79.0 7.93e-01 96.2% 94.3%
4009138 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.88 50.0 6.56e-01 96.2% 100.0%
3970263 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.87 50.0 6.52e-01 92.3% 100.0%
3966470 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.84 78.0 7.06e-01 100.0% 80.7%
2670619 101.1.1.58 alpha arrays › HTH › HTH › Three-helical HTH › HTH_18 0.76 46.0 5.85e-01 96.2% 100.0%
4540842 101.1.1.2 alpha arrays › HTH › HTH › Three-helical HTH › HTH_AraC 0.69 50.0 4.18e-01 75.0% 62.4%