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CAKLQH020000039.1__CAH1095474.1__SAMEA5780036_03621__00016
Bact-VirCAKLQH020000039.1__CAH1095474.1__SAMEA5780036_03621__00016
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 39-77_167-274
Domain cluster:
rep: MT764845.1__QNN99764.1__P67b_00005__00005__D1-49_166-191_211-292
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00905.28 best | Transpeptidase | 44.4 | 1.80e-11 | 91.2% | 48.2% |
CATH (46)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4jf6A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.99 | 97.0 | 7.93e-01 | 100.0% | 98.7% |
| 4iedA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.92 | 88.0 | 7.24e-01 | 100.0% | 98.3% |
| 6nhsA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.91 | 88.0 | 7.23e-01 | 100.0% | 99.6% |
| 1e3uD00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.91 | 88.0 | 7.17e-01 | 100.0% | 97.5% |
| 1m6kA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.89 | 85.0 | 6.90e-01 | 99.3% | 98.0% |
| 1nrfA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.89 | 86.0 | 6.98e-01 | 100.0% | 95.9% |
| 1k38A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.89 | 86.0 | 7.03e-01 | 100.0% | 97.5% |
| 7rlrA01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.87 | 81.0 | 6.68e-01 | 97.3% | 100.0% |
| 1xkzC00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.86 | 82.0 | 6.69e-01 | 100.0% | 94.0% |
| 4gn2A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.86 | 76.0 | 6.24e-01 | 91.8% | 99.2% |
| 5ctnA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.85 | 82.0 | 6.82e-01 | 100.0% | 97.0% |
| 3vskA03 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.84 | 80.0 | 5.84e-01 | 100.0% | 97.2% |
| 7rd0A02 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.82 | 77.0 | 5.82e-01 | 98.6% | 97.8% |
| 4mnrA02 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.82 | 77.0 | 5.86e-01 | 100.0% | 97.8% |
| 5hw3A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.80 | 75.0 | 6.03e-01 | 100.0% | 95.9% |
| 6bn3A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.79 | 74.0 | 5.97e-01 | 99.3% | 96.6% |
| 5tfqA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.79 | 74.0 | 5.91e-01 | 100.0% | 96.4% |
| 6izcA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.79 | 74.0 | 5.97e-01 | 100.0% | 100.0% |
| 3qhyA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.78 | 73.0 | 5.95e-01 | 99.3% | 99.2% |
| 1e25A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.78 | 73.0 | 5.80e-01 | 100.0% | 96.4% |
| 1ghpA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.78 | 72.0 | 5.91e-01 | 99.3% | 100.0% |
| 2wuqB00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.78 | 72.0 | 5.71e-01 | 99.3% | 96.1% |
| 3p09A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.76 | 71.0 | 5.77e-01 | 100.0% | 97.7% |
| 2j7vB01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.76 | 70.0 | 5.73e-01 | 100.0% | 96.2% |
| 4e6xB00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.75 | 71.0 | 5.48e-01 | 100.0% | 98.0% |
| 2ex2A01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.73 | 68.0 | 5.62e-01 | 99.3% | 100.0% |
| 3caxA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.60 | 43.0 | 4.43e-01 | 87.8% | 77.5% |
| 4ew7A00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.60 | 41.0 | 4.62e-01 | 85.0% | 91.2% |
| 4lrzE01 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.60 | 48.0 | 4.54e-01 | 100.0% | 70.8% |
| 2qkpD00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.59 | 44.0 | 4.62e-01 | 87.8% | 84.3% |
| 1kyfA02 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.58 | 33.0 | 3.75e-01 | 81.0% | 73.5% |
| 6zj8D01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.57 | 37.0 | 4.09e-01 | 86.4% | 82.5% |
| 2wiqA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.57 | 41.0 | 3.56e-01 | 84.4% | 48.0% |
| 2pslA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.56 | 40.0 | 3.57e-01 | 83.7% | 49.8% |
| 6gp1A00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.56 | 21.0 | 3.02e-01 | 93.9% | 72.3% |
| 1uisA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.56 | 40.0 | 3.51e-01 | 84.4% | 48.7% |
| 2c9jA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.55 | 40.0 | 3.56e-01 | 84.4% | 51.2% |
| 3hlzB01 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.55 | 45.0 | 4.68e-01 | 99.3% | 91.4% |
| 1ul7A00 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.55 | 28.0 | 3.27e-01 | 99.3% | 68.6% |
| 6xrbA01 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.55 | 43.0 | 4.45e-01 | 86.4% | 87.8% |
| 4dkmA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.55 | 39.0 | 3.51e-01 | 83.7% | 51.2% |
| 7prrB01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.53 | 43.0 | 4.10e-01 | 85.7% | 78.1% |
| 4fx9A03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.51 | 31.0 | 3.46e-01 | 99.3% | 77.0% |
| 3ai4A00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.51 | 42.0 | 3.50e-01 | 87.8% | 86.3% |
| 1eq6A00 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.51 | 46.0 | 4.24e-01 | 99.3% | 94.7% |
| 3ke7B00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 33.0 | 3.45e-01 | 95.2% | 72.2% |
ECOD (51)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3974655 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.93 | 83.0 | 8.59e-01 | 99.3% | 97.1% |
| 3386029 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.90 | 88.0 | 7.18e-01 | 100.0% | 96.2% |
| 4465852 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.89 | 85.0 | 8.37e-01 | 100.0% | 93.5% |
| 4247068 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.89 | 85.0 | 6.88e-01 | 98.6% | 98.0% |
| 4572271 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.89 | 85.0 | 6.97e-01 | 99.3% | 95.9% |
| 4090115 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.89 | 86.0 | 7.02e-01 | 100.0% | 95.9% |
| 4162647 | 223.3.1.8 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase2 | 0.78 | 73.0 | 5.76e-01 | 100.0% | 92.1% |
| 3950100 | 223.3.1.0 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins | 0.76 | 71.0 | 6.91e-01 | 100.0% | 96.9% |
| 4951648 | 223.3.1.6 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Peptidase_S13 | 0.70 | 65.0 | 6.16e-01 | 100.0% | 91.4% |
| 4189433 | 223.1.1.81 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › Cache_WalK | 0.66 | 43.0 | 3.89e-01 | 87.8% | 48.0% |
| 3969782 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.65 | 38.0 | 3.54e-01 | 87.1% | 46.1% |
| 3704579 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.62 | 46.0 | 4.50e-01 | 92.5% | 69.1% |
| 3272081 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.61 | 49.0 | 4.68e-01 | 99.3% | 74.1% |
| 152511 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.60 | 41.0 | 4.62e-01 | 85.0% | 91.2% |
| 3755943 | 223.2.1.37 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › C9orf72-like | 0.59 | 48.0 | 4.48e-01 | 98.6% | 69.2% |
| 4009014 | 223.1.1.35 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › sCache_3_2 | 0.59 | 38.0 | 3.44e-01 | 87.1% | 45.4% |
| 5053256 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.58 | 34.0 | 3.69e-01 | 78.9% | 68.8% |
| 3241603 | 223.2.1.37 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › C9orf72-like | 0.57 | 47.0 | 4.57e-01 | 100.0% | 78.8% |
| 5034773 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.57 | 41.0 | 4.67e-01 | 86.4% | 99.1% |
| 4949740 | 223.1.1.76 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_7 | 0.57 | 41.0 | 4.64e-01 | 85.0% | 98.2% |
| 5047928 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.57 | 35.0 | 3.87e-01 | 79.6% | 75.0% |
| 4952182 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.56 | 40.0 | 4.59e-01 | 86.4% | 99.1% |
| 3744550 | 223.2.1.48 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › FNIP_N, Longin_2 | 0.56 | 46.0 | 4.46e-01 | 95.2% | 78.2% |
| 5047424 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.56 | 34.0 | 3.74e-01 | 78.9% | 73.3% |
| 5002461 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.56 | 39.0 | 4.23e-01 | 84.4% | 85.8% |
| 5047426 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.56 | 33.0 | 3.76e-01 | 78.9% | 76.5% |
| 4999855 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.55 | 40.0 | 4.48e-01 | 85.0% | 98.2% |
| 2717340 | 881.1.1.4 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DcrB | 0.55 | 44.0 | 4.44e-01 | 86.4% | 83.3% |
| 4959631 | 223.1.1.25 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 | 0.55 | 42.0 | 3.42e-01 | 87.1% | 43.4% |
| 4527322 | 223.2.1.18 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Longin_2 | 0.55 | 45.0 | 4.20e-01 | 93.2% | 70.3% |
| 3606765 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.54 | 44.0 | 4.13e-01 | 88.4% | 96.8% |
| 2719766 | 223.1.1.2 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS | 0.54 | 41.0 | 4.27e-01 | 87.1% | 83.0% |
| 3612153 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.54 | 43.0 | 3.76e-01 | 87.8% | 55.1% |
| 3962603 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.54 | 39.0 | 4.40e-01 | 91.8% | 99.1% |
| 4963337 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.54 | 42.0 | 4.47e-01 | 87.1% | 92.3% |
| 3414415 | 223.2.1.4 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › DENN,uDENN | 0.54 | 46.0 | 4.19e-01 | 93.2% | 69.0% |
| 3601966 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.54 | 30.0 | 3.38e-01 | 80.3% | 69.6% |
| 4026900 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.53 | 31.0 | 3.47e-01 | 81.6% | 71.3% |
| 3246448 | 223.2.1.6 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › uDENN | 0.53 | 46.0 | 3.99e-01 | 93.2% | 68.0% |
| 3711119 | 331.9.1.0 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain | 0.53 | 32.0 | 3.55e-01 | 80.3% | 74.8% |
| 4957137 | 223.1.1.24 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 | 0.53 | 36.0 | 4.19e-01 | 82.3% | 100.0% |
| 5021201 | 3488.1.1.0 ↗ | a+b three layers › Putative sensor histidine kinase domain › Putative sensor histidine kinase domain › Putative sensor histidine kinase domain | 0.53 | 38.0 | 3.95e-01 | 85.7% | 80.7% |
| 3591435 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.52 | 41.0 | 4.09e-01 | 87.8% | 78.7% |
| 4940119 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.52 | 47.0 | 4.62e-01 | 99.3% | 92.9% |
| 3266681 | 331.9.1.1 ↗ | a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › Alpha_adaptin_C | 0.52 | 32.0 | 3.52e-01 | 80.3% | 74.8% |
| 4025319 | 881.1.1.2 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1 | 0.52 | 47.0 | 4.50e-01 | 99.3% | 93.5% |
| 3433086 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.51 | 27.0 | 3.33e-01 | 72.1% | 78.9% |
| 3973879 | 223.1.1.24 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_8 | 0.51 | 39.0 | 3.86e-01 | 87.8% | 75.5% |
| 3278990 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.51 | 44.0 | 4.38e-01 | 100.0% | 88.6% |
| 2516709 | 881.1.1.6 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Lpp-LpqN | 0.51 | 44.0 | 4.24e-01 | 100.0% | 80.9% |
| 5073891 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.50 | 30.0 | 3.51e-01 | 87.1% | 86.0% |
D2
medium
residues 78-166
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00905.28 best | Transpeptidase | 59.9 | 3.30e-16 | 97.8% | 30.4% |
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6nhsA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.99 | 96.0 | 6.66e-01 | 100.0% | 38.5% |
| 5ctnA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.98 | 96.0 | 6.69e-01 | 100.0% | 38.6% |
| 1m6kA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.97 | 94.0 | 6.44e-01 | 100.0% | 37.6% |
| 4iedA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.97 | 93.0 | 6.48e-01 | 100.0% | 37.6% |
| 1nrfA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.96 | 93.0 | 6.41e-01 | 100.0% | 36.2% |
| 1k38A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.94 | 89.0 | 6.24e-01 | 100.0% | 36.8% |
| 7rlrA01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.93 | 89.0 | 6.19e-01 | 100.0% | 41.2% |
| 1xkzC00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.92 | 88.0 | 6.09e-01 | 100.0% | 35.9% |
| 1e3uD00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.92 | 85.0 | 5.99e-01 | 100.0% | 36.0% |
| 4gn2A00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.91 | 87.0 | 6.09e-01 | 100.0% | 40.4% |
| 1mwsA04 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.87 | 82.0 | 5.38e-01 | 100.0% | 36.3% |
| 6g9sA01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.86 | 80.0 | 5.25e-01 | 100.0% | 37.6% |
| 4mnrA02 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.85 | 80.0 | 5.31e-01 | 100.0% | 37.3% |
| 3eqvA03 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.84 | 79.0 | 6.08e-01 | 100.0% | 63.0% |
| 6kghA03 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.84 | 78.0 | 5.94e-01 | 100.0% | 60.3% |
| 3ue3A03 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.84 | 78.0 | 6.03e-01 | 100.0% | 63.4% |
| 5df7A02 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.84 | 78.0 | 5.10e-01 | 100.0% | 34.1% |
| 7rd0A02 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.84 | 78.0 | 5.16e-01 | 100.0% | 35.4% |
| 6pl6B01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.80 | 74.0 | 4.85e-01 | 100.0% | 35.0% |
| 3udfA01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.80 | 74.0 | 4.77e-01 | 100.0% | 25.9% |
| 3zg9B02 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.79 | 73.0 | 4.77e-01 | 100.0% | 27.5% |
| 4hesA00 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.71 | 63.0 | 4.48e-01 | 100.0% | 40.4% |
| 2psmA00 | 1.20.1250.70 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interleukin-15/Interleukin-21 | 0.51 | 35.0 | 3.24e-01 | 100.0% | 53.8% |
ECOD (40)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2440206 | 4019.1.1.3 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.99 | 96.0 | 9.01e-01 | 100.0% | 89.3% |
| 1694237 | 4019.1.1.3 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.98 | 95.0 | 9.03e-01 | 100.0% | 89.1% |
| 4247068 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.97 | 94.0 | 6.46e-01 | 100.0% | 38.0% |
| 4165804 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.97 | 94.0 | 6.44e-01 | 100.0% | 36.0% |
| 3386029 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.96 | 93.0 | 6.47e-01 | 100.0% | 37.5% |
| 4572271 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.95 | 92.0 | 6.36e-01 | 100.0% | 36.3% |
| 4090115 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.94 | 90.0 | 6.26e-01 | 100.0% | 36.7% |
| 2440210 | 4019.1.1.3 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.94 | 90.0 | 8.31e-01 | 100.0% | 92.5% |
| 4071217 | 4019.1.1.3 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.93 | 89.0 | 8.48e-01 | 100.0% | 89.0% |
| 2754394 | 4019.1.1.3 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.92 | 87.0 | 8.08e-01 | 100.0% | 93.5% |
| 4344452 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.91 | 87.0 | 6.10e-01 | 100.0% | 39.6% |
| 4836999 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.91 | 83.0 | 8.10e-01 | 95.5% | 88.5% |
| 4885 | 4019.1.1.3 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.91 | 86.0 | 8.40e-01 | 100.0% | 92.7% |
| 4496784 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.91 | 86.0 | 6.01e-01 | 100.0% | 39.8% |
| 4860802 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.88 | 70.0 | 6.72e-01 | 83.1% | 77.2% |
| 4423152 | 4019.1.1.3 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.87 | 80.0 | 7.40e-01 | 97.8% | 100.0% |
| 4553574 | 4019.1.1.3 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.86 | 81.0 | 7.10e-01 | 100.0% | 94.4% |
| 4495366 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.86 | 80.0 | 5.13e-01 | 100.0% | 33.9% |
| 2741419 | 4019.1.1.3 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.86 | 80.0 | 6.89e-01 | 100.0% | 95.5% |
| 3942815 | 4019.1.1.3 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.86 | 80.0 | 6.84e-01 | 100.0% | 94.1% |
| 1761266 | 4019.1.1.3 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.85 | 80.0 | 6.80e-01 | 100.0% | 86.1% |
| 4879089 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.85 | 79.0 | 6.79e-01 | 98.9% | 95.5% |
| 2037202 | 4019.1.1.3 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.85 | 74.0 | 6.88e-01 | 92.1% | 92.6% |
| 3959713 | 3702.1.1.0 ↗ | beta complex topology › Penicillin binding protein dimerisation domain › Penicillin binding protein dimerisation domain › Penicillin binding protein dimerisation domain | 0.84 | 74.0 | 5.10e-01 | 93.3% | 37.5% |
| 4648315 | 4019.1.1.3 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.84 | 79.0 | 6.76e-01 | 100.0% | 95.6% |
| 2553557 | 4019.1.1.3 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.84 | 70.0 | 7.10e-01 | 87.6% | 95.4% |
| 1641233 | 4019.1.1.3 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.84 | 71.0 | 5.67e-01 | 89.9% | 58.4% |
| 2834315 | 4019.1.1.3 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.84 | 78.0 | 6.99e-01 | 100.0% | 96.6% |
| 4873577 | 223.3.1.3 ↗ | a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.84 | 77.0 | 6.07e-01 | 97.8% | 65.5% |
| 2771243 | 4019.1.1.3 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.83 | 78.0 | 6.82e-01 | 100.0% | 92.9% |
| 2531105 | 4019.1.1.3 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.83 | 74.0 | 6.57e-01 | 94.4% | 86.7% |
| 3973804 | 4019.1.1.3 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.83 | 77.0 | 7.15e-01 | 100.0% | 92.7% |
| 1657339 | 4019.1.1.3 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.82 | 76.0 | 7.00e-01 | 100.0% | 97.3% |
| 1117556 | 4019.1.1.3 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.82 | 75.0 | 6.72e-01 | 100.0% | 96.7% |
| 4009939 | 4019.1.1.3 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase | 0.80 | 71.0 | 6.94e-01 | 94.4% | 100.0% |
| 3967700 | 4019.1.1.9 ↗ | alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › DUF2300 | 0.74 | 66.0 | 6.49e-01 | 100.0% | 92.6% |
| 4004321 | 2498.1.1.109 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › DUF2300 | 0.73 | 65.0 | 6.16e-01 | 100.0% | 83.8% |
| 4629841 | 150.3.1.16 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › 4-helical cytokines › 4-helical cytokine › IL15 | 0.55 | 37.0 | 3.34e-01 | 100.0% | 48.5% |
| 3939929 | 206.1.1.10 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Choline_kinase | 0.51 | 45.0 | 2.94e-01 | 96.6% | 56.8% |
| 3396891 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.51 | 34.0 | 3.55e-01 | 96.6% | 74.1% |