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CAKLQH020000048.1__CAH1096095.1__SAMEA5780036_03829__00001
Bact-VirCAKLQH020000048.1__CAH1096095.1__SAMEA5780036_03829__00001
Identity
- Kingdom:
- phage
Quality
95.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-77
Domain cluster:
representative
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6nvxB02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.68 | 49.0 | 4.88e-01 | 89.3% | 72.7% |
| 1fm2B03 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.63 | 42.0 | 4.43e-01 | 86.7% | 77.3% |
| 4wksC02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.63 | 46.0 | 4.61e-01 | 89.3% | 77.3% |
| 4yfbC02 | 2.30.120.10 | Mainly Beta › Roll › Penicillin G acylase, beta-roll domain › Aminohydrolase, N-terminal nucleophile (Ntn) domain, beta-sheet knob region | 0.61 | 48.0 | 4.74e-01 | 90.7% | 80.8% |
| 6rupA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.60 | 41.0 | 3.64e-01 | 70.7% | 73.9% |
| 1se8A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.60 | 45.0 | 3.95e-01 | 80.0% | 59.5% |
| 4eziA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.60 | 49.0 | 3.38e-01 | 92.0% | 32.5% |
| 1dw9A02 | 3.30.1160.10 | Alpha Beta › 2-Layer Sandwich › Cyanate Lyase; Chain: A, domain 2 › Cyanate lyase, C-terminal domain | 0.60 | 31.0 | 3.22e-01 | 84.0% | 51.5% |
| 3f14A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.58 | 35.0 | 3.07e-01 | 76.0% | 39.3% |
| 5n6lA01 | 3.60.110.10 | Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase | 0.58 | 47.0 | 3.27e-01 | 92.0% | 84.0% |
| 3cdxD00 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.57 | 42.0 | 2.80e-01 | 78.7% | 66.5% |
| 3vpyA00 | 2.60.200.20 | Mainly Beta › Sandwich › Tumour Suppressor Smad4 › | 0.56 | 47.0 | 3.87e-01 | 94.7% | 57.9% |
| 2vg9A00 | 2.60.120.180 | Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain | 0.56 | 39.0 | 2.87e-01 | 78.7% | 25.8% |
| 2ebfX01 | 3.10.670.10 | Alpha Beta › Roll › Secreted effector protein ssei fold › Secreted effector protein ssei. | 0.56 | 39.0 | 2.99e-01 | 76.0% | 49.2% |
| 1t6eX01 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.55 | 40.0 | 3.08e-01 | 76.0% | 61.5% |
| 1f8vC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 46.0 | 3.08e-01 | 93.3% | 67.2% |
| 1novA00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 44.0 | 3.03e-01 | 97.3% | 66.0% |
| 3cqnB00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 44.0 | 3.54e-01 | 98.7% | 67.7% |
| 2chrA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.52 | 40.0 | 3.39e-01 | 84.0% | 73.2% |
| 3hx8A00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 34.0 | 2.94e-01 | 72.0% | 39.8% |
| 1ry6A00 | 3.40.850.10 | Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain | 0.51 | 38.0 | 2.61e-01 | 82.7% | 100.0% |
| 3anzC00 | 2.70.240.10 | Mainly Beta › Distorted Sandwich › Leukocidin-like › Leukocidin/porin MspA | 0.51 | 40.0 | 2.73e-01 | 86.7% | 92.2% |
| 5ib9A01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.50 | 37.0 | 2.64e-01 | 84.0% | 93.3% |
| 3loyA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.50 | 40.0 | 3.57e-01 | 90.7% | 73.7% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3995685 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.69 | 48.0 | 4.23e-01 | 72.0% | 74.3% |
| 4137758 | 375.14.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) | 0.69 | 39.0 | 4.53e-01 | 70.7% | 82.0% |
| 3639274 | 261.1.1.1 ↗ | a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › HECT | 0.68 | 38.0 | 2.27e-01 | 98.7% | 7.9% |
| 3360403 | 4.26.1.0 ↗ | beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 | 0.66 | 41.0 | 4.79e-01 | 70.7% | 94.0% |
| 3215667 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.64 | 45.0 | 3.90e-01 | 74.7% | 70.0% |
| 4044404 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.62 | 45.0 | 4.05e-01 | 76.0% | 79.0% |
| 4071803 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.61 | 44.0 | 3.34e-01 | 77.3% | 48.4% |
| 3608162 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.61 | 41.0 | 3.27e-01 | 70.7% | 58.8% |
| 3933757 | 327.5.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-binding_C | 0.59 | 43.0 | 3.78e-01 | 80.0% | 52.7% |
| 3703231 | 216.1.1.2 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Autophagy_act_C | 0.59 | 39.0 | 3.16e-01 | 70.7% | 58.2% |
| 4378403 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.58 | 48.0 | 2.79e-01 | 93.3% | 17.0% |
| 3783089 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.58 | 47.0 | 4.08e-01 | 92.0% | 60.8% |
| 4485316 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.58 | 48.0 | 2.77e-01 | 92.0% | 19.3% |
| 4233683 | 171.1.1.1 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 | 0.57 | 48.0 | 3.54e-01 | 97.3% | 58.6% |
| None | — | 0.57 | 43.0 | 2.83e-01 | 85.3% | 93.4% | |
| 2780879 | 1172.1.1.1 ↗ | beta barrels › UL131A-like › UL130 C-terminal domain › UL130 C-terminal domain › Gp_UL130 | 0.57 | 36.0 | 3.20e-01 | 86.7% | 44.1% |
| 2507516 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.56 | 47.0 | 2.85e-01 | 93.3% | 24.4% |
| 2035523 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.56 | 45.0 | 3.93e-01 | 86.7% | 70.5% |
| 3559952 | 71.2.1.4 ↗ | beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › CATIP_N | 0.56 | 47.0 | 3.45e-01 | 100.0% | 91.3% |
| 3839607 | 2.1.1.6 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB | 0.55 | 44.0 | 3.83e-01 | 88.0% | 70.3% |
| 3752543 | 7.1.1.17 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ, PDZ_6 | 0.55 | 42.0 | 3.77e-01 | 84.0% | 72.7% |
| 1943 | 11.13.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Leukocidin-like › Leukocidin-like › Leukocidin | 0.54 | 39.0 | 2.71e-01 | 78.7% | 92.2% |
| 5052132 | 512.1.1.0 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) | 0.54 | 44.0 | 3.94e-01 | 92.0% | 80.0% |
| 3962258 | 206.1.3.27 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › CP_ATPgrasp_2 | 0.53 | 38.0 | 3.14e-01 | 77.3% | 44.0% |
| 4160692 | 171.1.1.1 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 | 0.53 | 45.0 | 3.34e-01 | 100.0% | 84.9% |
| 4029824 | 2484.1.1.20 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 | 0.52 | 43.0 | 2.94e-01 | 92.0% | 73.6% |
| 3926817 | 219.1.1.25 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › LRAT | 0.52 | 46.0 | 3.59e-01 | 100.0% | 63.3% |
| 4967405 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 44.0 | 4.02e-01 | 96.0% | 97.1% |
| 4487061 | 328.8.1.1 ↗ | a+b two layers › IF3-like › Schlafen 8 › Schlafen 8 › SLFN_AlbA_2 | 0.52 | 43.0 | 3.27e-01 | 89.3% | 40.6% |
| 3422000 | 11.1.5.29 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Sec23_BS | 0.52 | 30.0 | 2.68e-01 | 74.7% | 40.0% |
| 3773836 | 11.1.1.100 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set,C2-set_2 | 0.52 | 36.0 | 2.95e-01 | 73.3% | 88.6% |
| 3737341 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.51 | 40.0 | 3.37e-01 | 100.0% | 49.2% |
| 3986530 | 330.1.1.33 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › SF0329 | 0.51 | 42.0 | 3.66e-01 | 96.0% | 90.2% |
| 423731 | 210.1.2.1 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase | 0.51 | 41.0 | 2.43e-01 | 92.0% | 19.0% |
| 3236742 | 2484.1.1.233 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF1280 | 0.51 | 41.0 | 2.76e-01 | 90.7% | 82.9% |
| 3517068 | 3115.1.1.6 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like › DUF4494 | 0.51 | 34.0 | 3.65e-01 | 70.7% | 100.0% |
| 3874464 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.50 | 40.0 | 2.64e-01 | 89.3% | 54.1% |