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CAKLQH020000049.1__CAH1096258.1__SAMEA5780036_03877__00021

Bact-Vir

CAKLQH020000049.1__CAH1096258.1__SAMEA5780036_03877__00021

Identity

Kingdom:
phage

Quality

88.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-79
PDB
D2 high residues 84-137
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04448.18 best DUF551 23.1 1.60e-04 100.0% 86.8%
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3nrlA00 2.40.10.390 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.67 57.0 5.34e-01 98.1% 97.1%
2avwD01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.64 54.0 4.13e-01 100.0% 73.0%
4me8A00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.64 49.0 3.92e-01 87.0% 94.0%
2ox7A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.64 53.0 5.00e-01 98.1% 89.9%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.63 54.0 3.65e-01 100.0% 40.7%
2p1gA02 2.30.260.10 Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain 0.63 51.0 4.38e-01 100.0% 79.0%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.62 51.0 4.98e-01 94.4% 98.3%
2e12A00 2.30.30.720 Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) 0.62 52.0 4.41e-01 96.3% 80.6%
3ednA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.62 46.0 3.49e-01 81.5% 72.4%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 45.0 3.81e-01 83.3% 77.0%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.61 50.0 4.54e-01 96.3% 87.0%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.58 48.0 3.75e-01 98.1% 62.9%
4ffkA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.58 38.0 3.04e-01 83.3% 29.3%
8gz3B01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 48.0 4.10e-01 96.3% 95.7%
1pwaA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.58 42.0 3.31e-01 79.6% 99.2%
1wi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 42.0 3.47e-01 83.3% 75.7%
5z8lA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.57 46.0 3.74e-01 98.1% 71.4%
1x1mA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 42.0 3.45e-01 81.5% 74.8%
3kyfA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.57 45.0 3.51e-01 87.0% 69.2%
1fx0B01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.57 47.0 4.28e-01 100.0% 96.2%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 45.0 3.94e-01 94.4% 78.0%
1r6zA03 2.170.260.10 Mainly Beta › Beta Complex › paz domain › paz domain 0.57 45.0 3.66e-01 98.1% 91.3%
1whlA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.57 45.0 3.81e-01 90.7% 86.3%
4wzzA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.57 42.0 3.05e-01 81.5% 100.0%
1cqxA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 47.0 3.85e-01 100.0% 90.1%
3u5wA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 41.0 3.24e-01 81.5% 68.3%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 43.0 3.93e-01 87.0% 76.3%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 44.0 4.24e-01 88.9% 78.1%
3r5lA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 41.0 3.30e-01 81.5% 77.6%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 43.0 3.83e-01 87.0% 66.3%
2ok5A02 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.56 46.0 3.20e-01 100.0% 87.7%
2kigA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.56 40.0 3.03e-01 83.3% 59.6%
8bs9A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.56 40.0 2.57e-01 79.6% 47.0%
3a2yA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.55 44.0 3.23e-01 100.0% 45.9%
1gd5A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.54 38.0 2.98e-01 75.9% 90.8%
2o6cA00 2.60.40.2480 Mainly Beta › Sandwich › Immunoglobulin-like › Periplasmic metal-binding protein Tp34-type 0.53 42.0 3.22e-01 98.1% 70.9%
1w1hD00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 40.0 3.12e-01 87.0% 77.4%
4kktA01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.53 42.0 3.68e-01 100.0% 71.9%
4dloB01 4.10.1240.10 Few Secondary Structures › Irregular › Hormone receptor fold › GPCR, family 2, extracellular hormone receptor domain 0.53 41.0 3.88e-01 87.0% 71.2%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 45.0 4.17e-01 100.0% 95.8%
4ybnB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 41.0 2.88e-01 90.7% 29.3%
1vq8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 39.0 3.50e-01 81.5% 62.8%
5yjlD01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 41.0 3.16e-01 90.7% 38.7%
1ep5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 38.0 3.36e-01 100.0% 51.2%
2aehA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 38.0 3.15e-01 83.3% 74.8%
3dnhA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 40.0 3.09e-01 94.4% 49.0%
2asfA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 40.0 3.15e-01 87.0% 47.2%
2qdeA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 37.0 2.91e-01 83.3% 95.6%
1c8zA00 3.20.90.10 Alpha Beta › Alpha-Beta Barrel › Tubby Protein; Chain A › Tubby Protein; Chain A 0.51 40.0 2.77e-01 100.0% 90.6%
3nbxX04 2.40.128.430 Mainly Beta › Beta Barrel › Lipocalin › 0.51 40.0 3.44e-01 100.0% 95.3%
2vldB01 2.70.180.20 Mainly Beta › Distorted Sandwich › Protein Yojf; Chain: A; › 0.51 39.0 3.18e-01 90.7% 72.9%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.50 39.0 3.01e-01 88.9% 70.8%
2xc8A00 2.60.40.2980 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 39.0 3.18e-01 92.6% 94.2%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4008273 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 69.0 6.32e-01 100.0% 88.6%
None 0.70 53.0 3.30e-01 83.3% 97.1%
4024290 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 50.0 3.76e-01 85.2% 80.7%
3709314 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 50.0 3.93e-01 85.2% 76.7%
3358121 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.65 49.0 3.45e-01 85.2% 34.9%
3543794 6.1.1.1 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › FGF 0.63 47.0 3.42e-01 85.2% 78.2%
3275950 219.1.1.6 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 0.62 46.0 3.32e-01 83.3% 47.4%
3712139 220.1.1.29 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_3 0.61 46.0 3.76e-01 83.3% 66.4%
3290160 4.1.1.323 beta barrels › SH3 › SH3 › SH3 › WYL 0.61 51.0 4.62e-01 100.0% 95.0%
3886492 4.1.1.154 beta barrels › SH3 › SH3 › SH3 › DUF4772 0.61 47.0 4.24e-01 85.2% 80.0%
3838919 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.60 45.0 3.39e-01 81.5% 95.7%
3883184 389.1.2.8 few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › PF28847 0.60 48.0 4.62e-01 90.7% 95.4%
5029583 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.60 44.0 3.37e-01 83.3% 40.7%
3780792 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.60 48.0 3.85e-01 90.7% 95.7%
3718643 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 44.0 3.29e-01 79.6% 66.4%
4943168 1.1.7.144 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AAA_11 0.60 51.0 4.34e-01 100.0% 80.0%
1790393 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 50.0 4.44e-01 100.0% 85.4%
4319764 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.59 50.0 4.07e-01 100.0% 63.6%
3224710 389.1.1.0 few secondary structure elements › EGF-like › EGF-related › EGF/Laminin 0.59 43.0 3.96e-01 81.5% 84.0%
3797511 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 47.0 3.95e-01 90.7% 61.1%
5034820 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.59 42.0 3.07e-01 83.3% 26.8%
4945727 4111.1.1.2 a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.58 47.0 3.65e-01 100.0% 71.5%
3967745 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.58 48.0 4.46e-01 100.0% 93.3%
4995699 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 46.0 4.29e-01 90.7% 82.9%
3502388 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 46.0 4.22e-01 90.7% 70.7%
3889863 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.58 40.0 3.22e-01 75.9% 98.3%
3973757 9.1.1.11 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_2 0.58 45.0 3.39e-01 92.6% 74.4%
3830187 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.57 45.0 4.53e-01 90.7% 94.5%
4999024 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.57 43.0 3.03e-01 87.0% 30.6%
3999725 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 45.0 3.94e-01 90.7% 63.5%
4978571 1.1.5.17 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.55 39.0 3.09e-01 81.5% 70.3%
3393319 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.55 48.0 3.86e-01 100.0% 53.6%
3514556 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 45.0 4.18e-01 92.6% 82.9%
3957374 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.55 42.0 3.99e-01 90.7% 88.6%
3280741 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.55 44.0 3.42e-01 94.4% 46.7%
3516794 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.55 46.0 3.51e-01 100.0% 74.3%
3225127 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.55 39.0 2.41e-01 77.8% 23.3%
2713759 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.54 42.0 3.72e-01 90.7% 72.4%
3925426 220.1.1.176 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7778 0.54 39.0 3.07e-01 83.3% 61.4%
3285845 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.54 44.0 3.38e-01 96.3% 47.1%
None 0.54 37.0 2.34e-01 83.3% 11.8%
1108894 4.1.1.122 beta barrels › SH3 › SH3 › SH3 › SH3_17 0.54 42.0 4.29e-01 88.9% 98.1%
3547884 389.1.2.7 few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › THBD 0.54 41.0 3.92e-01 90.7% 92.9%
3442524 375.1.1.303 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › ABCA11_C 0.54 37.0 3.77e-01 79.6% 74.5%
4622995 1001.1.1.0 a+b two layers › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 › Formate dehydrogenase/DMSO reductase, domain 1 0.54 37.0 3.69e-01 75.9% 88.3%
3244497 4.1.1.187 beta barrels › SH3 › SH3 › SH3 › DIRP 0.54 46.0 3.41e-01 100.0% 70.0%
3257228 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.54 43.0 3.68e-01 96.3% 81.0%
4979901 2.1.1.17 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.53 37.0 3.45e-01 74.1% 92.9%
2713758 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.53 42.0 3.15e-01 90.7% 41.4%
4040298 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.53 36.0 3.26e-01 70.4% 60.0%
3283603 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 41.0 3.72e-01 96.3% 88.2%
3414912 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.52 41.0 3.56e-01 100.0% 61.9%
4993962 1.1.5.11 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › UbiD 0.52 40.0 2.82e-01 92.6% 38.1%
4223216 214.1.1.7 a+b two layers › SH2 › SH2 › SH2 › SH2_1 0.52 41.0 3.32e-01 100.0% 74.6%
4029890 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.51 44.0 2.74e-01 100.0% 25.9%
3845425 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.51 44.0 3.77e-01 100.0% 63.3%
3172397 11.1.1.207 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › AMPK1_CBM 0.50 39.0 3.46e-01 96.3% 62.1%
1166007 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.50 38.0 2.84e-01 87.0% 45.9%
4022463 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 35.0 2.33e-01 79.6% 93.2%