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CAKLQH020000058.1__CAH1096702.1__SAMEA5780036_04018__00016

Bact-Vir

CAKLQH020000058.1__CAH1096702.1__SAMEA5780036_04018__00016

Identity

Kingdom:
phage

Quality

78.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-109
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ydmB00 3.40.50.10420 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NagB/RpiA/CoA transferase-like 0.59 42.0 3.37e-01 73.9% 74.7%
2o5vA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 33.0 2.65e-01 100.0% 27.6%
1r7lA00 3.30.2120.10 Alpha Beta › 2-Layer Sandwich › Bacillus phage protein › Bacillus phage protein-like 0.58 28.0 2.70e-01 80.4% 39.8%
1tr8A01 2.20.70.30 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › Nascent polypeptide-associated complex domain 0.57 27.0 3.47e-01 83.7% 78.8%
4o5vA03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.57 37.0 4.00e-01 97.8% 80.3%
1r4wA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 42.0 3.31e-01 83.7% 92.8%
4mtnA01 3.30.1480.10 Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain 0.54 32.0 3.18e-01 100.0% 55.8%
3wirA03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.50 25.0 2.84e-01 93.5% 62.3%
3tufA00 1.10.287.4300 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Stage III sporulation protein AH-like 0.50 42.0 3.89e-01 90.2% 80.0%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3764049 2004.1.1.442 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21 0.63 36.0 2.47e-01 100.0% 16.7%
3698929 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.62 38.0 3.12e-01 100.0% 32.9%
4411074 3124.1.1.1 ↗ beta sandwiches › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › Nascent polypeptide-associated complex (NAC) dimerization domain › NAC 0.61 29.0 3.85e-01 83.7% 84.0%
4440404 4325.1.1.15 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › PF26354 0.60 34.0 3.19e-01 77.2% 42.5%
3216869 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.58 33.0 2.57e-01 100.0% 26.2%
4552404 101.1.2.88 ↗ alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.56 39.0 3.35e-01 85.9% 43.2%
5072222 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.55 36.0 3.96e-01 93.5% 82.7%
3962189 375.13.1.0 ↗ few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain 0.55 31.0 3.62e-01 100.0% 78.5%
4122804 375.13.1.1 ↗ few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Toprim_C_rpt 0.54 30.0 3.78e-01 100.0% 92.7%
5008666 192.6.1.12 ↗ alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain › PF27306 0.51 41.0 4.25e-01 90.2% 94.1%
3842317 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.51 43.0 3.29e-01 93.5% 87.4%