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CC-chemokine_family_protein

Euk-Vir

Flamingopox_virus_FGPVKD09

CC-chemokine_family_protein__YP_009447979__Flamingopox_virus_FGPVKD09__2059380

Identity

Accession:
YP_009447979 ↗
Protein ID:
CC-chemokine_family_protein
Kingdom:
euk

Quality

74.4 mean pLDDT

Taxonomy

Bamfordvirae› Nucleocytoviricota› Pokkesviricetes› Chitovirales› Poxviridae› Avipoxvirus› Flamingopox_virus_FGPVKD09

TaxID: 2059380

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 24-95
PDB
D2 high residues 110-194
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF17614.8 best FPV060 40.2 3.40e-10 100.0% 41.5%
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.75 52.0 5.78e-01 74.1% 91.0%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.75 52.0 5.78e-01 74.1% 92.4%
1zxtA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.74 50.0 5.79e-01 75.3% 98.4%
4oijA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.71 50.0 5.41e-01 77.6% 87.3%
5wb2B00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.71 47.0 5.07e-01 72.9% 80.8%
1f9qD00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.70 49.0 5.47e-01 72.9% 93.9%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 51.0 5.62e-01 80.0% 100.0%
1eigA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 51.0 5.41e-01 85.9% 93.2%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 46.0 5.10e-01 70.6% 97.0%
2mp1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.67 52.0 5.44e-01 82.4% 90.9%
5cbeE00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 45.0 5.01e-01 81.2% 92.2%
1eotA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 48.0 5.09e-01 78.8% 87.8%
1ha6A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 46.0 4.93e-01 72.9% 91.4%
3q2iA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.60 41.0 3.35e-01 71.8% 83.3%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.60 37.0 4.31e-01 83.5% 89.8%
3c96A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 39.0 3.21e-01 70.6% 48.8%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.57 40.0 4.36e-01 96.5% 93.9%
4fb5A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.56 39.0 2.82e-01 71.8% 86.4%
6dgiA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.56 40.0 3.41e-01 97.6% 45.1%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 38.0 3.76e-01 80.0% 67.0%
1w1hD00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 44.0 3.84e-01 95.3% 86.9%
4ihqA01 3.30.450.370 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 39.0 3.30e-01 83.5% 66.7%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 33.0 3.73e-01 78.8% 88.7%
3bqxA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 35.0 3.02e-01 72.9% 43.9%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 35.0 4.02e-01 83.5% 100.0%
3oxhA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 34.0 3.10e-01 70.6% 50.9%
1kllA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.50 35.0 3.12e-01 72.9% 49.2%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3894506 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.77 53.0 5.81e-01 74.1% 87.1%
3896688 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.76 52.0 6.06e-01 75.3% 100.0%
3912274 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.76 51.0 5.58e-01 72.9% 84.3%
3856611 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.75 50.0 5.67e-01 70.6% 92.1%
665 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.75 52.0 5.74e-01 74.1% 91.0%
3880422 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.75 52.0 5.71e-01 72.9% 89.7%
3842884 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.74 52.0 5.72e-01 76.5% 91.2%
3541613 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.73 51.0 5.67e-01 77.6% 91.2%
4813310 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.73 52.0 5.81e-01 76.5% 95.5%
4424678 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.72 50.0 5.64e-01 75.3% 93.8%
3898211 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.71 50.0 5.34e-01 75.3% 83.8%
3890480 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.71 51.0 5.36e-01 75.3% 84.0%
2388239 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.71 47.0 5.07e-01 72.9% 80.8%
3894564 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.70 50.0 5.14e-01 76.5% 77.1%
3911547 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.69 50.0 5.10e-01 76.5% 77.6%
3859059 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.69 48.0 4.75e-01 71.8% 71.1%
3878850 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.69 50.0 5.26e-01 76.5% 85.3%
3918073 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.69 50.0 5.44e-01 76.5% 92.9%
1558587 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.67 52.0 5.44e-01 82.4% 90.9%
3964241 4263.2.1.1 ↗ a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.64 44.0 4.78e-01 70.6% 95.7%
1700100 1170.1.1.1 ↗ beta barrels › IL8-related › IL8-related › IL8 › IL8 0.64 44.0 4.95e-01 80.0% 100.0%
3255344 220.1.1.27 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD 0.61 43.0 3.90e-01 74.1% 91.7%
3563547 220.1.1.27 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD 0.61 42.0 3.77e-01 72.9% 90.4%
3533115 220.1.1.27 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD 0.61 42.0 3.49e-01 72.9% 81.9%
3941152 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.60 43.0 4.76e-01 78.8% 100.0%
3575394 220.1.1.27 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD 0.60 42.0 3.51e-01 72.9% 90.0%
3930846 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.60 43.0 4.61e-01 80.0% 94.3%
3472026 220.1.1.27 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD 0.59 42.0 3.80e-01 75.3% 87.5%
3257321 241.4.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 › GSKIP_dom 0.58 44.0 4.00e-01 78.8% 65.5%
3263647 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 41.0 3.73e-01 76.5% 79.2%
4504508 2.1.1.2 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.57 40.0 4.05e-01 74.1% 81.2%
4071167 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 38.0 4.07e-01 70.6% 82.9%
4020605 4294.1.1.0 ↗ few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.55 38.0 3.85e-01 89.4% 71.8%
5073368 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 35.0 3.79e-01 82.4% 80.0%
5005288 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 36.0 3.02e-01 70.6% 76.8%
3637832 206.1.1.11 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.52 46.0 2.93e-01 100.0% 62.8%
1160855 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.50 33.0 3.67e-01 75.3% 96.6%