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CC-chemokine_family_protein

Euk-Vir

Flamingopox_virus_FGPVKD09

CC-chemokine_family_protein__YP_009448135__Flamingopox_virus_FGPVKD09__2059380

Identity

Accession:
YP_009448135 ↗
Protein ID:
CC-chemokine_family_protein
Kingdom:
euk

Quality

74.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-99
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00048.26 best IL8 32.7 9.60e-08 73.1% 95.0%
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.89 65.0 7.03e-01 93.6% 88.1%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.88 65.0 7.04e-01 97.4% 90.9%
1zxtA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.87 63.0 7.10e-01 91.0% 96.7%
4oijA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.86 63.0 6.65e-01 91.0% 84.5%
1eotA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.83 62.0 6.40e-01 91.0% 82.4%
1eigA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.83 62.0 6.39e-01 92.3% 83.6%
5wb2B00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.81 62.0 6.38e-01 93.6% 84.9%
5cbeE00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.80 57.0 6.21e-01 76.9% 89.1%
1f9qD00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.78 58.0 6.28e-01 93.6% 92.4%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.77 60.0 6.40e-01 87.2% 95.5%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.77 60.0 6.50e-01 98.7% 98.5%
2mp1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.77 59.0 6.01e-01 93.6% 83.1%
1ha6A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.75 56.0 5.85e-01 87.2% 88.6%
2kumA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.71 50.0 5.68e-01 87.2% 100.0%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.70 48.0 4.31e-01 71.8% 77.1%
6az1E02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.69 34.0 4.15e-01 82.1% 70.6%
3j7aF02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.69 35.0 4.18e-01 82.1% 72.5%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 47.0 5.29e-01 92.3% 100.0%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 46.0 4.48e-01 71.8% 93.1%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 42.0 4.32e-01 88.5% 69.4%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 46.0 4.18e-01 76.9% 94.4%
5t1dB00 3.10.390.20 Alpha Beta › Roll › SAND domain › Viral glycoprotein L 0.62 48.0 4.45e-01 83.3% 81.8%
1wr2A01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.62 47.0 3.79e-01 82.1% 68.8%
4qxaB00 2.30.29.230 Mainly Beta › Roll › PH-domain like › 0.62 52.0 4.33e-01 96.2% 93.2%
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 48.0 4.43e-01 85.9% 83.3%
1vq8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 41.0 4.15e-01 91.0% 71.8%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 38.0 4.09e-01 93.6% 77.3%
5tdeA01 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.58 44.0 3.64e-01 83.3% 60.4%
4bwgD00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 41.0 3.82e-01 83.3% 59.8%
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 34.0 4.03e-01 78.2% 93.9%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.57 37.0 3.91e-01 82.1% 76.1%
3fdjA03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.57 43.0 3.73e-01 83.3% 100.0%
4dxkA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.56 42.0 3.56e-01 78.2% 98.4%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.56 43.0 3.77e-01 87.2% 82.3%
4v0bA00 3.30.720.210 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.56 41.0 4.41e-01 80.8% 100.0%
4fnfA00 2.40.50.50 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 41.0 3.84e-01 88.5% 63.3%
1bakA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 47.0 4.17e-01 98.7% 74.8%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 44.0 4.01e-01 92.3% 91.8%
3kyhC01 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.54 44.0 3.15e-01 91.0% 97.9%
1a31A03 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.54 41.0 3.46e-01 87.2% 56.7%
3pvlA04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 46.0 4.28e-01 96.2% 89.9%
1ri6A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 39.0 2.59e-01 78.2% 100.0%
1faoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 44.0 4.10e-01 93.6% 88.0%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 43.0 4.24e-01 89.7% 89.5%
1b44D00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 41.0 3.73e-01 88.5% 63.2%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.52 38.0 2.73e-01 87.2% 24.3%
4hwxA00 3.30.350.10 Alpha Beta › 2-Layer Sandwich › Subtilisin Inhibitor › Subtilisin inhibitor-like 0.52 35.0 3.20e-01 71.8% 80.7%
3kreA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.52 39.0 3.33e-01 83.3% 78.6%
7b9cA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 36.0 2.39e-01 76.9% 97.9%
ECOD (73)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3856611 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.94 64.0 7.18e-01 71.8% 87.3%
3894506 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.93 67.0 7.09e-01 75.6% 82.9%
3896688 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.92 66.0 7.50e-01 75.6% 96.7%
3761120 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.92 66.0 7.19e-01 89.7% 89.2%
665 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.89 65.0 6.95e-01 93.6% 88.1%
3556735 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.88 65.0 6.77e-01 91.0% 82.2%
4813310 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.87 64.0 6.94e-01 93.6% 89.6%
3842884 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.86 65.0 6.93e-01 89.7% 89.7%
3541613 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.86 63.0 6.77e-01 91.0% 88.2%
4424678 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.86 65.0 7.12e-01 93.6% 95.4%
2055300 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.85 62.0 5.91e-01 75.6% 68.5%
3880422 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.84 65.0 6.98e-01 93.6% 92.6%
3764537 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.83 65.0 6.49e-01 94.9% 80.0%
3912274 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.83 67.0 7.06e-01 98.7% 94.3%
659 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.83 62.0 6.39e-01 92.3% 83.6%
3878850 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.82 65.0 6.68e-01 97.4% 86.7%
3898211 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.82 65.0 6.71e-01 97.4% 87.8%
2388239 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.81 62.0 6.38e-01 93.6% 84.9%
1032344 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.81 60.0 5.97e-01 93.6% 75.3%
3869511 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.79 71.0 6.60e-01 96.2% 89.5%
1094905 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.79 61.0 6.38e-01 80.8% 95.7%
3915693 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.79 60.0 6.48e-01 89.7% 95.4%
3894564 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.79 65.0 6.38e-01 98.7% 81.9%
3859059 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.78 62.0 5.87e-01 94.9% 72.2%
3918073 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.77 62.0 6.49e-01 97.4% 94.3%
3899072 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.77 59.0 6.18e-01 87.2% 90.0%
3891033 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.77 59.0 6.14e-01 87.2% 87.7%
1558587 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.77 59.0 6.01e-01 93.6% 83.1%
3890480 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.76 62.0 6.30e-01 98.7% 89.3%
319225 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.76 62.0 6.34e-01 100.0% 90.5%
1700100 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.76 56.0 6.19e-01 76.9% 98.4%
138374 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.74 59.0 5.71e-01 97.4% 76.1%
3911547 1170.1.1.1 beta barrels › IL8-related › IL8-related › IL8 › IL8 0.73 66.0 6.42e-01 100.0% 89.4%
3941152 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.69 51.0 5.51e-01 79.5% 98.5%
4399169 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.67 44.0 4.92e-01 89.7% 88.3%
4932378 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 43.0 4.73e-01 91.0% 85.0%
3211283 220.1.1.27 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_RBD 0.65 54.0 4.21e-01 92.3% 89.1%
5035086 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.65 43.0 4.83e-01 92.3% 90.0%
3471641 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 54.0 4.60e-01 92.3% 94.4%
4461475 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 44.0 4.64e-01 92.3% 81.4%
4149372 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 44.0 4.71e-01 93.6% 87.7%
3422528 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 45.0 4.97e-01 87.2% 98.3%
3930845 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.60 39.0 4.05e-01 75.6% 71.4%
4928706 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.60 43.0 4.50e-01 94.9% 84.3%
5049906 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.60 39.0 4.31e-01 89.7% 86.7%
2642946 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.59 42.0 4.06e-01 92.3% 65.9%
3259095 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 49.0 4.27e-01 92.3% 69.2%
4940372 2.1.1.2 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosomal_L2 0.58 43.0 4.48e-01 92.3% 87.1%
3567875 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.58 52.0 4.07e-01 98.7% 58.7%
3186247 2.1.1.11 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-1a 0.57 41.0 3.50e-01 75.6% 74.6%
3893746 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.57 51.0 4.15e-01 97.4% 68.6%
3930536 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 39.0 3.92e-01 83.3% 71.2%
4049072 2.4.1.6 beta barrels › OB-fold › MOP-like › MOP-like › CysA_C_terminal 0.56 42.0 3.76e-01 89.7% 56.4%
4140296 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.56 48.0 3.93e-01 93.6% 64.3%
3270836 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.55 47.0 4.09e-01 92.3% 74.8%
3924612 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.55 46.0 3.87e-01 92.3% 60.0%
3407530 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.55 42.0 3.53e-01 82.1% 81.5%
3371196 5.1.3.67 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.55 41.0 2.74e-01 79.5% 96.6%
None 0.55 45.0 2.91e-01 91.0% 61.0%
3810543 220.1.1.20 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.55 48.0 4.32e-01 98.7% 83.6%
329360 3534.1.1.2 beta barrels › Pfam PF06938 (DUF1285) › Pfam PF06938 (DUF1285) › Pfam PF06938 (DUF1285) › DUF1285_C 0.55 45.0 4.21e-01 94.9% 87.1%
3557162 5.1.5.52 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › EMC1_C 0.55 37.0 2.30e-01 70.5% 75.1%
3627778 220.1.1.64 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C1_MyoVII 0.54 47.0 4.40e-01 97.4% 91.0%
3347210 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 45.0 4.31e-01 89.7% 90.9%
3439990 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.54 46.0 4.38e-01 92.3% 91.1%
3259097 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.54 47.0 4.03e-01 97.4% 69.6%
3364309 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.54 45.0 3.74e-01 89.7% 58.5%
3290151 4090.1.1.0 a+b two layers › BH3703-like › BH3703-like › BH3703-like 0.53 43.0 3.60e-01 84.6% 56.0%
1545617 316.1.1.33 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › APMV_polyA_pol_cat_2nd 0.53 40.0 2.78e-01 82.1% 85.5%
3285197 4090.1.1.0 a+b two layers › BH3703-like › BH3703-like › BH3703-like 0.53 42.0 3.47e-01 84.6% 53.3%
3166788 206.1.3.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.52 44.0 2.84e-01 98.7% 88.7%
3709493 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 44.0 3.74e-01 94.9% 75.4%
3734891 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.51 40.0 3.30e-01 87.2% 57.3%