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CG30
Euk-VirUrbanus_proteus_nucleopolyhedrovirus
CG30__YP_009250055__Urbanus_proteus_nucleopolyhedrovirus__1675866
Identity
- Accession:
- YP_009250055 ↗
- Protein ID:
- CG30
- Kingdom:
- euk
Quality
77.7
mean pLDDT
Taxonomy
TaxID: 1675866
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 14-110
Domain cluster:
rep: CG30__YP_010086494__Spodoptera_exempta_nucleopolyhedrovirus__1242863__D3-115
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00097.32 best | zf-C3HC4 | 29.7 | 6.30e-07 | 50.5% | 100.0% |
| PF13445.13 | zf-RING_UBOX | 25.8 | 1.20e-05 | 48.4% | 100.0% |
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1fr3A00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.72 | 36.0 | 4.34e-01 | 80.4% | 71.6% |
| 3vk6A01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.67 | 40.0 | 4.99e-01 | 73.2% | 98.3% |
| 6gmhH01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.66 | 38.0 | 3.34e-01 | 81.4% | 38.2% |
| 2c9oB02 | 2.40.50.360 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain | 0.62 | 36.0 | 3.48e-01 | 82.5% | 49.6% |
| 2cqaA01 | 2.40.50.360 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain | 0.57 | 37.0 | 4.05e-01 | 82.5% | 85.1% |
| 1ti2B03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 39.0 | 4.19e-01 | 77.3% | 82.1% |
| 2ci8A01 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.57 | 31.0 | 3.92e-01 | 77.3% | 92.9% |
| 4hntA04 | 3.10.600.10 | Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain | 0.56 | 30.0 | 3.02e-01 | 73.2% | 50.5% |
| 4a2bA03 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.55 | 33.0 | 3.33e-01 | 85.6% | 57.9% |
| 2lezA00 | 3.30.2450.10 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 | 0.54 | 32.0 | 2.97e-01 | 79.4% | 45.0% |
| 1vquB02 | 3.40.1030.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain | 0.54 | 47.0 | 3.49e-01 | 97.9% | 85.9% |
| 4yi7A02 | 3.40.1030.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain | 0.54 | 47.0 | 3.48e-01 | 97.9% | 85.0% |
| 4q0yA00 | 2.60.40.4400 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 36.0 | 3.29e-01 | 70.1% | 88.5% |
| 6muwM00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.53 | 39.0 | 3.02e-01 | 77.3% | 93.4% |
| 1o17D02 | 3.40.1030.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain | 0.52 | 46.0 | 3.47e-01 | 99.0% | 81.7% |
| 3f6gA01 | 3.30.160.740 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 31.0 | 3.84e-01 | 83.5% | 100.0% |
| 2oq1A03 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.52 | 42.0 | 4.23e-01 | 96.9% | 86.0% |
| 6muwK00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.52 | 37.0 | 3.00e-01 | 76.3% | 98.5% |
| 1khdD02 | 3.40.1030.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain | 0.52 | 45.0 | 3.48e-01 | 97.9% | 86.1% |
| 1xteA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.51 | 41.0 | 3.86e-01 | 84.5% | 92.2% |
| 6muwJ00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.51 | 37.0 | 2.95e-01 | 77.3% | 95.1% |
| 5kolD00 | 3.90.950.20 | Alpha Beta › Alpha-Beta Complex › Maf protein › CinA-like | 0.51 | 43.0 | 3.64e-01 | 95.9% | 77.3% |
| 5w7zA01 | 3.10.150.10 | Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 | 0.50 | 39.0 | 3.74e-01 | 83.5% | 93.8% |
ECOD (42)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3510156 | 376.1.1.22 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 | 0.87 | 47.0 | 6.03e-01 | 83.5% | 88.3% |
| 3242788 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.80 | 49.0 | 5.37e-01 | 82.5% | 75.0% |
| 3869437 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.79 | 47.0 | 5.89e-01 | 71.1% | 96.7% |
| 3532210 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.79 | 47.0 | 4.78e-01 | 71.1% | 61.1% |
| 3215700 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.78 | 46.0 | 4.24e-01 | 84.5% | 46.8% |
| 4001708 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.78 | 49.0 | 5.75e-01 | 71.1% | 89.7% |
| 3995147 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.78 | 47.0 | 5.02e-01 | 84.5% | 69.4% |
| 3219112 | 192.8.1.443 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › zf-RING_UBOX | 0.74 | 48.0 | 3.63e-01 | 72.2% | 30.5% |
| 3523273 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.73 | 46.0 | 5.41e-01 | 71.1% | 90.0% |
| 3879043 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.73 | 46.0 | 5.24e-01 | 71.1% | 84.0% |
| 3244152 | 376.1.1.27 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 | 0.72 | 48.0 | 5.34e-01 | 71.1% | 83.7% |
| 4056276 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.72 | 46.0 | 4.54e-01 | 70.1% | 61.0% |
| 5061930 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.70 | 37.0 | 3.80e-01 | 76.3% | 51.6% |
| 3227165 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.70 | 49.0 | 4.77e-01 | 71.1% | 67.3% |
| 3743942 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.69 | 44.0 | 4.55e-01 | 70.1% | 68.9% |
| 1693005 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.68 | 34.0 | 3.58e-01 | 75.3% | 50.6% |
| 4468497 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.67 | 48.0 | 4.67e-01 | 74.2% | 78.1% |
| 3996907 | 2.1.1.27 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RNA_pol_Rpb8 | 0.66 | 37.0 | 3.36e-01 | 80.4% | 41.1% |
| 3385864 | 2.4.1.0 ↗ | beta barrels › OB-fold › MOP-like › MOP-like | 0.66 | 36.0 | 4.48e-01 | 80.4% | 86.7% |
| 3560459 | 391.1.2.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related | 0.66 | 31.0 | 4.36e-01 | 78.4% | 95.6% |
| 3247425 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.66 | 48.0 | 4.62e-01 | 76.3% | 86.4% |
| 3734010 | 376.1.1.8 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box | 0.65 | 42.0 | 4.15e-01 | 70.1% | 61.0% |
| 4954529 | 3335.1.1.0 ↗ | beta barrels › Handle domain in transferrin-binding protein B › Handle domain in transferrin-binding protein B › Handle domain in transferrin-binding protein B | 0.65 | 29.0 | 3.60e-01 | 77.3% | 66.7% |
| 3718300 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.63 | 35.0 | 3.90e-01 | 75.3% | 69.3% |
| 4977347 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.57 | 42.0 | 4.47e-01 | 76.3% | 94.1% |
| 3598074 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.55 | 37.0 | 3.67e-01 | 82.5% | 64.8% |
| 4191773 | 7544.1.1.1 ↗ | a/b three-layered sandwiches › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain › Glycos_transf_3 | 0.54 | 48.0 | 3.44e-01 | 97.9% | 81.4% |
| 3266894 | 11.1.1.820 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Beta-sand_ComC_2nd | 0.54 | 34.0 | 3.65e-01 | 83.5% | 72.9% |
| 3862816 | 391.1.2.1 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › VWC | 0.54 | 32.0 | 3.78e-01 | 90.7% | 87.5% |
| 5031732 | 1.1.1.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas | 0.54 | 40.0 | 3.82e-01 | 78.4% | 95.7% |
| 4328408 | 7544.1.1.1 ↗ | a/b three-layered sandwiches › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain › Glycos_transf_3 | 0.54 | 47.0 | 3.45e-01 | 97.9% | 87.2% |
| 5031060 | 2.1.1.32 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TIP49 | 0.53 | 36.0 | 3.45e-01 | 82.5% | 59.1% |
| 3289254 | 220.1.1.82 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_6 | 0.53 | 32.0 | 3.26e-01 | 73.2% | 61.1% |
| 4125419 | 2.4.1.1 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE | 0.52 | 41.0 | 3.69e-01 | 82.5% | 75.4% |
| 5024339 | 2.1.1.32 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TIP49 | 0.52 | 36.0 | 3.41e-01 | 82.5% | 60.0% |
| 3478366 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.52 | 41.0 | 3.99e-01 | 83.5% | 95.2% |
| 4683341 | 2484.1.1.12 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Acetate_kinase | 0.51 | 35.0 | 2.80e-01 | 92.8% | 33.5% |
| 3271913 | 11.1.1.820 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Beta-sand_ComC_2nd | 0.51 | 35.0 | 3.54e-01 | 83.5% | 71.6% |
| 1868804 | 7520.1.1.1 ↗ | a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like › CinA | 0.51 | 43.0 | 3.61e-01 | 94.8% | 75.7% |
| 4129753 | 7544.1.1.1 ↗ | a/b three-layered sandwiches › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain › Glycos_transf_3 | 0.50 | 44.0 | 3.24e-01 | 97.9% | 85.6% |
| 3911618 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.50 | 40.0 | 3.26e-01 | 84.5% | 70.9% |
| 3747453 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.50 | 40.0 | 3.54e-01 | 85.6% | 84.3% |