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CG30

Euk-Vir

Spodoptera_exempta_nucleopolyhedrovirus

CG30__YP_010086494__Spodoptera_exempta_nucleopolyhedrovirus__1242863

Identity

Accession:
YP_010086494 ↗
Protein ID:
CG30
Kingdom:
euk

Quality

75.5 mean pLDDT

Taxonomy

Naldaviricetes› Lefavirales› Baculoviridae› Alphabaculovirus› Spodoptera_exempta_nucleopolyhedrovirus

TaxID: 1242863

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-115
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00097.32 best zf-C3HC4 22.9 8.40e-05 49.6% 100.0%
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2cklB01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.71 41.0 5.19e-01 91.2% 93.0%
7zj3D01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.66 44.0 5.22e-01 92.9% 96.3%
4a18P00 3.30.720.90 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.63 30.0 3.80e-01 81.4% 75.8%
1vd4A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.59 33.0 4.09e-01 70.8% 96.8%
1azpA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 27.0 3.47e-01 79.6% 77.3%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4135426 376.1.1.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.78 44.0 5.13e-01 88.5% 76.5%
3533740 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.77 44.0 5.44e-01 88.5% 86.7%
3520111 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.76 44.0 5.70e-01 88.5% 100.0%
3333001 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.76 41.0 5.54e-01 89.4% 100.0%
3893740 376.1.1.21 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.74 45.0 4.57e-01 89.4% 61.8%
4011434 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.71 43.0 4.65e-01 92.0% 71.6%
3402788 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.70 45.0 5.14e-01 88.5% 85.9%
3855533 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.69 46.0 5.44e-01 92.0% 96.2%
3566406 376.1.1.27 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.68 46.0 5.00e-01 90.3% 82.1%
3245310 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.67 45.0 5.34e-01 92.0% 97.5%
3246405 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.66 44.0 4.31e-01 92.0% 63.3%
3214164 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.61 45.0 4.58e-01 92.9% 77.3%
8014 375.1.1.37 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TF_Zn_Ribbon 0.59 33.0 4.09e-01 70.8% 96.8%
3938245 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.58 35.0 2.89e-01 73.5% 31.3%
3550392 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.58 35.0 2.97e-01 73.5% 35.7%
4004118 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.57 35.0 3.01e-01 73.5% 36.8%
3255511 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.57 35.0 2.99e-01 73.5% 35.8%
3223233 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.57 35.0 2.81e-01 72.6% 29.6%
3934966 210.1.1.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.56 36.0 2.89e-01 79.6% 31.8%
3528252 73.1.1.13 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › Pellino_RING 0.55 50.0 4.45e-01 99.1% 86.9%
None — 0.55 34.0 2.91e-01 71.7% 36.8%
3394822 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.55 34.0 2.84e-01 71.7% 34.9%
3783244 375.1.1.179 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIE_alpha 0.51 35.0 2.81e-01 70.8% 46.7%
D2 medium residues 228-314
PDB
Domain cluster: representative
D3 medium residues 315-369
PDB
Domain cluster: representative