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CG_2015-01t_scaffold_1_prodigal-single.1__X__X__00003
Bact-VirCG_2015-01t_scaffold_1_prodigal-single.1__X__X__00003
Identity
- Kingdom:
- phage
Quality
96.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-57
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2d9tA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.80 | 68.0 | 7.04e-01 | 100.0% | 98.0% |
| 2vb6A01 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.77 | 63.0 | 6.32e-01 | 100.0% | 87.0% |
| 6my0A02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.76 | 63.0 | 5.84e-01 | 100.0% | 72.3% |
| 2ckkA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.74 | 64.0 | 6.48e-01 | 100.0% | 94.3% |
| 2lccA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 65.0 | 5.75e-01 | 100.0% | 71.1% |
| 4k7cA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.70 | 61.0 | 3.64e-01 | 100.0% | 24.6% |
| 2avwD01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.69 | 59.0 | 4.41e-01 | 100.0% | 54.6% |
| 1wzoA01 | 2.30.30.370 | Mainly Beta › Roll › SH3 type barrels. › FAH | 0.69 | 44.0 | 4.80e-01 | 100.0% | 87.5% |
| 1g6zA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.68 | 53.0 | 4.81e-01 | 84.9% | 64.3% |
| 4k8wA00 | 2.10.109.10 | Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A | 0.65 | 59.0 | 4.50e-01 | 100.0% | 78.0% |
| 2hivA03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.65 | 51.0 | 3.77e-01 | 90.6% | 79.7% |
| 4krtB03 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.65 | 58.0 | 5.35e-01 | 100.0% | 98.5% |
| 3htrA00 | 2.30.30.240 | Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain | 0.63 | 55.0 | 4.54e-01 | 100.0% | 61.2% |
| 3ceyB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 55.0 | 4.07e-01 | 100.0% | 63.1% |
| 2rprA00 | 2.20.25.240 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.62 | 46.0 | 4.04e-01 | 96.2% | 50.6% |
| 1a0iA02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.62 | 50.0 | 4.09e-01 | 90.6% | 97.0% |
| 1q57G01 | 2.20.25.180 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.62 | 42.0 | 3.85e-01 | 88.7% | 52.1% |
| 3lzwA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.62 | 53.0 | 4.16e-01 | 100.0% | 97.5% |
| 2eyqA05 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.61 | 51.0 | 5.01e-01 | 100.0% | 86.4% |
| 1mo9A02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.60 | 52.0 | 3.88e-01 | 98.1% | 49.6% |
| 2rm4A01 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 49.0 | 4.66e-01 | 100.0% | 78.8% |
| 2au3A02 | 3.90.980.10 | Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain | 0.58 | 45.0 | 3.50e-01 | 88.7% | 59.1% |
| 2lt1A00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.58 | 49.0 | 4.46e-01 | 100.0% | 73.3% |
| 1rp0A02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.57 | 47.0 | 3.18e-01 | 100.0% | 60.2% |
| 4y4mC00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.56 | 47.0 | 3.11e-01 | 100.0% | 53.7% |
| 7rkbA01 | 3.90.420.10 | Alpha Beta › Alpha-Beta Complex › Sulfite Oxidase; Chain A, domain 2 › Oxidoreductase, molybdopterin-binding domain | 0.55 | 43.0 | 3.44e-01 | 98.1% | 63.2% |
| 2vrqA01 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.54 | 40.0 | 3.03e-01 | 90.6% | 32.6% |
| 1ugiD00 | 3.10.450.20 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor | 0.54 | 41.0 | 3.62e-01 | 86.8% | 78.0% |
| 1pvmA00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.51 | 33.0 | 2.48e-01 | 90.6% | 20.2% |
| 1wbaA00 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.51 | 40.0 | 2.95e-01 | 96.2% | 46.2% |
| 4p0dA02 | 2.60.40.740 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 37.0 | 2.80e-01 | 88.7% | 97.1% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3784140 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 67.0 | 6.67e-01 | 100.0% | 92.7% |
| 3629316 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 67.0 | 5.35e-01 | 100.0% | 52.0% |
| 3177469 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.74 | 68.0 | 6.13e-01 | 100.0% | 82.9% |
| 3823780 | 4.1.1.51 ↗ | beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor | 0.74 | 67.0 | 5.89e-01 | 100.0% | 73.3% |
| 3607981 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 66.0 | 5.87e-01 | 100.0% | 77.0% |
| 3170251 | 4.1.1.170 ↗ | beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind | 0.73 | 66.0 | 4.78e-01 | 100.0% | 42.1% |
| 2803945 | 4.1.1.24 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L14e | 0.72 | 59.0 | 4.23e-01 | 100.0% | 33.3% |
| 4941924 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.72 | 65.0 | 5.64e-01 | 100.0% | 70.0% |
| 5072932 | 4.6.1.0 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain | 0.72 | 64.0 | 6.20e-01 | 100.0% | 98.3% |
| 3546727 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.72 | 64.0 | 5.06e-01 | 100.0% | 61.1% |
| 3782292 | 4.1.1.170 ↗ | beta barrels › SH3 › SH3 › SH3 › Rad9_Rad53_bind | 0.71 | 64.0 | 5.58e-01 | 100.0% | 80.0% |
| 3603761 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.71 | 64.0 | 5.65e-01 | 100.0% | 81.3% |
| 3368864 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.71 | 66.0 | 6.08e-01 | 100.0% | 83.1% |
| 3723465 | 4.1.1.5 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW,Ribosomal_L14e | 0.70 | 62.0 | 4.42e-01 | 100.0% | 35.2% |
| 3812766 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.70 | 63.0 | 5.73e-01 | 100.0% | 85.7% |
| 5057367 | 4.6.1.0 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain | 0.70 | 58.0 | 5.65e-01 | 100.0% | 85.0% |
| 4953339 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.70 | 60.0 | 5.30e-01 | 100.0% | 71.2% |
| 4966270 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.70 | 62.0 | 5.19e-01 | 100.0% | 75.6% |
| 5059538 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.69 | 62.0 | 5.36e-01 | 100.0% | 73.8% |
| 5072385 | 4.6.1.0 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain | 0.68 | 61.0 | 5.22e-01 | 100.0% | 76.5% |
| 5058925 | 4.6.1.0 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain | 0.68 | 60.0 | 5.50e-01 | 100.0% | 82.9% |
| 4938385 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.68 | 59.0 | 5.21e-01 | 100.0% | 76.2% |
| 3231154 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 62.0 | 5.31e-01 | 100.0% | 91.3% |
| 4955897 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.67 | 59.0 | 5.09e-01 | 100.0% | 78.8% |
| 3397967 | 2.1.1.31 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DNA_ligase_A_C | 0.67 | 54.0 | 3.85e-01 | 88.7% | 80.6% |
| 1557493 | 4056.1.1.6 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein › P23-45_portal_barrel | 0.67 | 57.0 | 5.04e-01 | 100.0% | 84.0% |
| 3924760 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 60.0 | 5.00e-01 | 100.0% | 63.3% |
| 5037785 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.66 | 58.0 | 5.10e-01 | 100.0% | 80.0% |
| 4655719 | 4.1.1.92 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_9 | 0.66 | 59.0 | 4.91e-01 | 100.0% | 68.9% |
| 5039243 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.66 | 58.0 | 5.06e-01 | 100.0% | 73.8% |
| 5064103 | 4.6.1.0 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain | 0.65 | 57.0 | 5.21e-01 | 100.0% | 84.3% |
| 3515127 | 4.1.1.280 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4176 | 0.64 | 56.0 | 4.66e-01 | 100.0% | 74.7% |
| 4993200 | 4.6.1.2 ↗ | beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC | 0.64 | 56.0 | 5.04e-01 | 100.0% | 80.0% |
| 3311205 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.63 | 54.0 | 4.03e-01 | 100.0% | 88.3% |
| 4466506 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 51.0 | 4.62e-01 | 100.0% | 73.3% |
| None | — | 0.60 | 51.0 | 3.21e-01 | 100.0% | 55.1% | |
| 3390503 | 708.1.1.4 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH | 0.59 | 46.0 | 4.35e-01 | 96.2% | 70.8% |
| 2472877 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.58 | 43.0 | 3.91e-01 | 88.7% | 58.3% |
| 3460007 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.58 | 47.0 | 2.99e-01 | 96.2% | 53.5% |
| 4477076 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.55 | 44.0 | 3.99e-01 | 94.3% | 85.0% |
| 3605414 | 243.6.1.10 ↗ | a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › Pre-PUA_NSUN2 | 0.55 | 41.0 | 3.31e-01 | 83.0% | 52.3% |
| 3733204 | 2003.1.2.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › DAO | 0.53 | 42.0 | 2.56e-01 | 100.0% | 47.9% |
| 3174858 | 4.1.1.41 ↗ | beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C | 0.51 | 41.0 | 2.99e-01 | 100.0% | 31.1% |