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CG_2015-01t_scaffold_1_prodigal-single.1__X__X__00010

Bact-Vir

CG_2015-01t_scaffold_1_prodigal-single.1__X__X__00010

Identity

Kingdom:
phage

Quality

94.8 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-80
PDB
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qqgA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.80 47.0 4.28e-01 79.7% 45.6%
6vg3A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.67 46.0 4.45e-01 72.2% 95.6%
3kulA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.66 46.0 4.43e-01 72.2% 95.5%
7vd7A01 3.10.450.530 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 0.66 50.0 4.78e-01 88.6% 69.6%
6ya6A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.64 46.0 4.31e-01 75.9% 91.8%
3akhA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.63 55.0 3.74e-01 100.0% 45.5%
4xrtA01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.62 46.0 3.85e-01 79.7% 47.9%
2b4wA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.62 55.0 3.74e-01 100.0% 38.1%
3ecfA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 46.0 4.00e-01 81.0% 84.4%
2gu3A01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 44.0 4.75e-01 78.5% 90.8%
5tgnA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 44.0 3.99e-01 77.2% 95.4%
3ebtA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 46.0 3.90e-01 81.0% 93.1%
4pj2A00 2.40.128.460 Mainly Beta › Beta Barrel › Lipocalin › Periplasmic lysozyme inhibitor of I-type lysozyme 0.61 45.0 3.94e-01 91.1% 52.1%
3a58A01 2.30.29.90 Mainly Beta › Roll › PH-domain like › 0.61 51.0 4.02e-01 94.9% 83.9%
1v0fA02 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.59 50.0 3.34e-01 100.0% 39.6%
1u4dA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 41.0 4.06e-01 72.2% 94.0%
4gl6A01 3.10.450.570 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Domain of unknown function (DUF5037), N-terminal subdomain 0.58 43.0 4.32e-01 79.7% 95.1%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.58 47.0 3.92e-01 93.7% 74.7%
2zylA02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.58 45.0 3.24e-01 82.3% 33.2%
2kigA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.57 48.0 3.86e-01 94.9% 80.7%
5evhA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 42.0 3.68e-01 78.5% 86.8%
5e4bA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.57 41.0 3.29e-01 78.5% 39.8%
4fczA00 3.10.450.710 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Tgt2/MlaC 0.57 41.0 3.20e-01 77.2% 77.6%
3lygA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 41.0 3.63e-01 78.5% 91.7%
1xjvA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 38.0 3.22e-01 72.2% 50.0%
4mxtA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.55 41.0 3.15e-01 81.0% 78.1%
2mj7A00 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.54 39.0 3.25e-01 81.0% 42.6%
3lydA01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.54 46.0 3.88e-01 97.5% 59.9%
4xrtA02 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 39.0 3.18e-01 78.5% 39.4%
8hbfB02 3.30.450.260 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem NO binding associated domain 0.54 40.0 3.48e-01 82.3% 73.7%
1yliB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 41.0 3.46e-01 87.3% 95.3%
1rjbA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 45.0 3.91e-01 92.4% 71.2%
7xpkA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.53 45.0 3.76e-01 98.7% 93.1%
3nqzA01 3.10.450.490 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 38.0 3.70e-01 78.5% 70.3%
2vlgC00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 37.0 3.48e-01 77.2% 91.2%
3n8bA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 41.0 4.23e-01 96.2% 90.7%
3kztA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 35.0 3.09e-01 73.4% 84.8%
3otlA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 39.0 3.17e-01 82.3% 64.1%
2le1A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 38.0 3.14e-01 81.0% 47.0%
3ml4C01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 42.0 3.90e-01 94.9% 83.3%
3p9vA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 38.0 3.10e-01 81.0% 59.5%
2il5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 35.0 2.90e-01 74.7% 41.4%
3k7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 35.0 3.23e-01 73.4% 99.1%
4h63Q04 3.90.1150.120 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.50 45.0 3.94e-01 98.7% 70.7%
5dzeA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 45.0 3.36e-01 100.0% 61.3%
3icyA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 35.0 3.15e-01 74.7% 57.6%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3227179 243.1.1.85 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26531 0.66 50.0 4.41e-01 82.3% 87.5%
166755 5.1.3.143 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR, BNR_3 0.65 57.0 3.56e-01 100.0% 25.7%
None 0.65 45.0 2.97e-01 73.4% 25.5%
5080172 243.3.1.59 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › GvpO 0.64 55.0 5.40e-01 94.9% 95.3%
3560578 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.62 45.0 2.72e-01 74.7% 28.1%
3207857 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 54.0 3.52e-01 100.0% 46.8%
3613616 5.1.4.39 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC4_WD40 0.62 53.0 3.42e-01 100.0% 37.0%
3444588 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.62 51.0 3.36e-01 100.0% 20.3%
6397 243.1.1.30 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4904 0.62 46.0 4.00e-01 81.0% 84.4%
3242469 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 53.0 3.32e-01 100.0% 27.6%
1907494 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.61 44.0 3.99e-01 77.2% 95.4%
3219435 243.1.1.75 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26530 0.60 45.0 3.39e-01 79.7% 55.7%
3793738 220.1.1.32 beta barrels › PH domain-like › PH domain-like › PH domain-like › Sec3-PIP2_bind 0.60 50.0 4.18e-01 94.9% 90.3%
3926355 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 43.0 4.26e-01 77.2% 94.1%
2169 5.1.2.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_43 0.59 51.0 3.48e-01 100.0% 48.7%
5055252 5.1.4.40 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 0.59 50.0 3.35e-01 94.9% 27.8%
3593787 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.58 43.0 3.14e-01 78.5% 32.4%
5013867 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.58 43.0 4.22e-01 79.7% 84.7%
3597007 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.57 42.0 3.33e-01 78.5% 83.8%
4995993 325.1.6.9 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Duplicated hybrid motif › PF26482 0.57 47.0 4.06e-01 91.1% 75.2%
3643274 331.3.1.11 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.57 42.0 3.39e-01 79.7% 51.5%
3425464 5.1.3.54 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1668 0.56 48.0 3.20e-01 100.0% 36.1%
3278065 4312.1.1.4 a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 0.56 41.0 3.81e-01 98.7% 59.1%
5000550 5.1.4.43 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP_3 0.55 47.0 3.23e-01 100.0% 36.6%
3682129 5.1.3.68 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.55 47.0 3.13e-01 100.0% 47.5%
3695858 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.55 47.0 3.22e-01 98.7% 54.0%
3240627 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.54 47.0 3.18e-01 94.9% 31.6%
1146580 3308.1.1.2 beta duplicates or obligate multimers › periplasmic lysozyme inhibitor of I-type lysozyme-like › periplasmic lysozyme inhibitor of I-type lysozyme › periplasmic lysozyme inhibitor of I-type lysozyme › CarG-like 0.54 46.0 3.79e-01 100.0% 62.7%
3232668 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.54 46.0 3.15e-01 94.9% 48.8%
3970647 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.54 46.0 3.68e-01 98.7% 77.5%
4946845 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.54 42.0 3.02e-01 86.1% 37.3%
3247540 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.54 46.0 3.11e-01 94.9% 48.2%
3833269 5.1.4.550 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.54 45.0 3.16e-01 100.0% 29.0%
5019287 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.53 35.0 3.47e-01 75.9% 63.5%
5058907 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 36.0 3.27e-01 72.2% 80.0%
3916104 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.53 45.0 3.05e-01 94.9% 29.0%
3600523 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.53 43.0 2.78e-01 92.4% 51.8%
3710350 206.1.1.72 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Pkinase_fungal 0.52 44.0 2.95e-01 94.9% 43.3%
4606362 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.52 42.0 4.12e-01 91.1% 92.9%
3734117 2008.1.1.99 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PDDEXK_12 0.52 44.0 3.24e-01 100.0% 69.8%
3736279 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 45.0 2.95e-01 100.0% 40.8%
3805053 5.1.4.550 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.52 43.0 3.04e-01 100.0% 29.5%
3194447 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 45.0 2.93e-01 97.5% 27.8%
3265287 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 43.0 2.81e-01 94.9% 38.7%
3913048 206.1.1.74 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr 0.51 44.0 2.81e-01 94.9% 94.4%
3781393 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.51 44.0 4.35e-01 98.7% 95.2%
4353273 331.9.1.10 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › PF28631 0.51 38.0 3.17e-01 81.0% 56.0%
3698492 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.51 38.0 3.37e-01 82.3% 53.6%
3633568 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 45.0 3.00e-01 100.0% 32.7%
3601493 247.1.1.0 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase 0.51 38.0 2.43e-01 81.0% 18.1%
3968970 1.1.7.83 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › YknX_C 0.51 40.0 3.85e-01 88.6% 86.3%
3807456 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.51 35.0 3.57e-01 74.7% 90.0%
3694611 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.50 35.0 2.34e-01 74.7% 26.5%
4015614 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.50 37.0 3.25e-01 81.0% 53.8%
3488012 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.50 44.0 2.98e-01 97.5% 31.9%