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CG_2015-01t_scaffold_1_prodigal-single.1__X__X__00048
Bact-VirCG_2015-01t_scaffold_1_prodigal-single.1__X__X__00048
Identity
- Kingdom:
- phage
Quality
92.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-90
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1kafA00 | 3.90.1150.20 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription regulator MotA, C-terminal domain | 0.63 | 56.0 | 5.29e-01 | 100.0% | 88.0% |
| 3c6kA01 | 3.30.160.110 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain | 0.62 | 47.0 | 4.59e-01 | 98.9% | 73.4% |
| 2af5A02 | 3.90.930.1 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › | 0.60 | 43.0 | 3.69e-01 | 73.9% | 60.1% |
| 4l1mB00 | 2.130.10.30 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II | 0.60 | 49.0 | 3.35e-01 | 92.0% | 88.8% |
| 2opeA00 | 3.30.540.20 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › | 0.59 | 49.0 | 4.40e-01 | 88.6% | 91.7% |
| 1k32A02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.58 | 48.0 | 3.26e-01 | 92.0% | 99.7% |
| 2i2lA01 | 2.10.70.50 | Mainly Beta › Ribbon › Complement Module; domain 1 › | 0.58 | 33.0 | 4.07e-01 | 92.0% | 94.2% |
| 1pguA02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.57 | 50.0 | 3.44e-01 | 98.9% | 91.7% |
| 1rwiA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.57 | 50.0 | 3.63e-01 | 98.9% | 91.4% |
| 1a2pA00 | 3.10.450.30 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Microbial ribonucleases | 0.57 | 47.0 | 4.45e-01 | 89.8% | 90.7% |
| 4zn4A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.57 | 44.0 | 2.87e-01 | 84.1% | 73.1% |
| 3ei3B02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.56 | 48.0 | 3.33e-01 | 96.6% | 90.2% |
| 4jpdA00 | 3.30.920.10 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY | 0.56 | 51.0 | 4.77e-01 | 100.0% | 86.2% |
| 5hz7A01 | 3.30.700.50 | Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › | 0.56 | 45.0 | 4.15e-01 | 86.4% | 92.1% |
| 3vz9B00 | 3.30.457.50 | Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Chromosome segregation protein Spc25 | 0.56 | 40.0 | 3.83e-01 | 75.0% | 74.8% |
| 1zhxA03 | 2.40.160.120 | Mainly Beta › Beta Barrel › Porin › | 0.55 | 43.0 | 3.39e-01 | 84.1% | 94.8% |
| 4mxtA00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.55 | 44.0 | 3.51e-01 | 89.8% | 80.7% |
| 1v95A01 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.55 | 45.0 | 4.18e-01 | 100.0% | 70.7% |
| 4ci8A02 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 46.0 | 3.29e-01 | 100.0% | 92.0% |
| 1nycA00 | 2.40.310.10 | Mainly Beta › Beta Barrel › Staphostatins › beta-Barrel protease inhibitors | 0.54 | 46.0 | 4.30e-01 | 95.5% | 75.7% |
| 5ic7A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.54 | 44.0 | 3.02e-01 | 92.0% | 72.1% |
| 2jrbA00 | 3.30.250.20 | Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › L1 transposable element, C-terminal domain | 0.53 | 31.0 | 3.49e-01 | 100.0% | 76.9% |
| 2w7qB00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.51 | 42.0 | 3.39e-01 | 92.0% | 85.6% |
| 4m0hA01 | 2.60.120.1440 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 40.0 | 3.53e-01 | 87.5% | 93.5% |
| 2kcdA00 | 3.10.450.250 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › S. aureus uracil DNA glycosylase inhibitor | 0.51 | 44.0 | 4.07e-01 | 100.0% | 93.3% |
| 3pcrA01 | 3.10.450.460 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain | 0.51 | 42.0 | 4.14e-01 | 93.2% | 87.2% |
| 5upiA01 | 2.70.98.30 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 | 0.50 | 41.0 | 3.27e-01 | 90.9% | 83.5% |
| 1xipA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.50 | 42.0 | 2.92e-01 | 100.0% | 67.0% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3827179 | 708.1.1.7 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › DBD_Tnp_Mut | 0.67 | 44.0 | 4.88e-01 | 97.7% | 84.3% |
| 3511696 | 708.1.1.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain | 0.63 | 40.0 | 4.43e-01 | 78.4% | 81.4% |
| 4212114 | 4041.1.1.1 ↗ | a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 | 0.63 | 44.0 | 3.48e-01 | 71.6% | 84.0% |
| 3710981 | 77.2.1.1 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN | 0.61 | 42.0 | 3.63e-01 | 71.6% | 63.0% |
| 4681334 | 77.1.1.0 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein | 0.61 | 44.0 | 3.20e-01 | 77.3% | 62.0% |
| 3456571 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.60 | 45.0 | 3.22e-01 | 80.7% | 49.6% |
| 3940934 | 4023.1.1.0 ↗ | a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core | 0.59 | 44.0 | 4.33e-01 | 79.5% | 72.6% |
| 4976589 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.58 | 44.0 | 4.31e-01 | 100.0% | 73.7% |
| 5643 | 809.2.1.1 ↗ | a+b two layers › BLIP-like › BT0923-like › BT0923-like › PepSY_like | 0.57 | 37.0 | 4.06e-01 | 97.7% | 81.7% |
| 5069814 | 5.1.4.40 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_2 | 0.57 | 49.0 | 3.53e-01 | 97.7% | 95.4% |
| 3483545 | 4291.1.1.0 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein | 0.57 | 50.0 | 3.31e-01 | 100.0% | 67.9% |
| 2128123 | 913.1.1.2 ↗ | few secondary structure elements › Hormone receptor domain (HRM, Pfam 02793) › Hormone receptor domain (HRM, Pfam 02793) › Hormone receptor domain (HRM, Pfam 02793) › ComP_DUS | 0.57 | 47.0 | 4.24e-01 | 88.6% | 89.9% |
| 3993469 | 216.1.1.4 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › RWD | 0.56 | 49.0 | 4.58e-01 | 100.0% | 85.5% |
| 3727865 | 331.3.1.2 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Ring_hydroxyl_A | 0.56 | 50.0 | 3.79e-01 | 100.0% | 54.0% |
| 3279439 | 234.1.1.1 ↗ | a+b two layers › Microbial ribonucleases-like › Microbial ribonucleases › Microbial ribonucleases › Ribonuclease | 0.56 | 46.0 | 4.61e-01 | 88.6% | 87.8% |
| 3991567 | 4291.1.1.1 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP | 0.56 | 46.0 | 3.05e-01 | 93.2% | 57.3% |
| 363983 | 234.1.1.1 ↗ | a+b two layers › Microbial ribonucleases-like › Microbial ribonucleases › Microbial ribonucleases › Ribonuclease | 0.56 | 43.0 | 4.23e-01 | 92.0% | 76.8% |
| 3255116 | 4291.1.1.1 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP | 0.55 | 46.0 | 3.13e-01 | 92.0% | 64.8% |
| 4025855 | 77.2.1.1 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN | 0.55 | 44.0 | 3.84e-01 | 88.6% | 90.3% |
| 3708114 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.55 | 44.0 | 4.18e-01 | 98.9% | 72.4% |
| 4507130 | 4099.1.1.1 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › MAD | 0.55 | 39.0 | 3.58e-01 | 73.9% | 66.1% |
| 3411134 | 5.1.4.12 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema | 0.55 | 46.0 | 2.90e-01 | 94.3% | 89.4% |
| 3563261 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.55 | 42.0 | 2.98e-01 | 83.0% | 79.6% |
| 3433185 | 1094.1.1.0 ↗ | a/b three-layered sandwiches › Polycomb protein Eed insertion domain › Polycomb protein Eed insertion domain › Polycomb protein Eed insertion domain | 0.55 | 45.0 | 3.44e-01 | 89.8% | 67.3% |
| 3359773 | 4291.1.1.1 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP | 0.55 | 45.0 | 2.99e-01 | 92.0% | 57.8% |
| 3931299 | 4099.1.1.20 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med14_RM6 | 0.54 | 47.0 | 4.14e-01 | 100.0% | 75.0% |
| 3363360 | 4.1.1.141 ↗ | beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor | 0.54 | 33.0 | 3.42e-01 | 96.6% | 63.5% |
| 868 | 9.6.1.2 ↗ | beta barrels › Lipocalins/Streptavidin › Staphostatin › Staphostatin › Staphostatin_B | 0.54 | 46.0 | 4.30e-01 | 95.5% | 75.7% |
| 3256430 | 4099.1.1.1 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › MAD | 0.54 | 38.0 | 3.36e-01 | 73.9% | 60.0% |
| 3896806 | 5.1.4.341 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_IFT140_2nd | 0.54 | 45.0 | 2.87e-01 | 96.6% | 58.5% |
| 3643255 | 5.1.4.222 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta_prop_At2g24240 | 0.54 | 47.0 | 3.19e-01 | 100.0% | 87.7% |
| 3223065 | 5.1.4.265 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_WDR3_1st | 0.54 | 47.0 | 3.09e-01 | 100.0% | 94.7% |
| 3498784 | 4099.1.1.1 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › MAD | 0.53 | 38.0 | 3.73e-01 | 73.9% | 75.8% |
| 3407537 | 77.2.1.1 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN | 0.53 | 37.0 | 3.19e-01 | 72.7% | 57.2% |
| 3202136 | 331.3.1.2 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Ring_hydroxyl_A | 0.53 | 46.0 | 3.56e-01 | 98.9% | 52.9% |
| 1097232 | 3180.1.1.1 ↗ | a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › EspG | 0.53 | 44.0 | 4.19e-01 | 93.2% | 79.4% |
| 2649512 | 77.1.1.1 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Lipoprotein_1 | 0.53 | 43.0 | 3.38e-01 | 88.6% | 56.1% |
| 3742689 | 5.1.4.661 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR36-Utp21_1st | 0.52 | 46.0 | 3.20e-01 | 100.0% | 93.3% |
| 3736787 | 331.3.1.2 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Ring_hydroxyl_A | 0.52 | 47.0 | 3.29e-01 | 100.0% | 39.3% |
| 3789082 | 4291.1.1.1 ↗ | beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP | 0.52 | 44.0 | 2.87e-01 | 93.2% | 61.7% |
| 3420348 | 4.1.1.306 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N | 0.52 | 31.0 | 3.67e-01 | 97.7% | 94.5% |
| 3037102 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 32.0 | 3.62e-01 | 100.0% | 87.1% |
| 3888419 | 5087.2.1.2 ↗ | beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-1N › Lipovitellin LV-1N › PF29934 | 0.51 | 44.0 | 3.20e-01 | 100.0% | 79.3% |
| 3613739 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 43.0 | 2.52e-01 | 96.6% | 32.6% |
| 4849380 | 79.1.1.37 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › PF30765 | 0.50 | 32.0 | 2.71e-01 | 81.8% | 36.1% |
| 5003246 | 2.7.1.1 ↗ | beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V | 0.50 | 36.0 | 3.14e-01 | 78.4% | 62.7% |