←Back to structures
CG_2015-01t_scaffold_1_prodigal-single.1__X__X__00061
Bact-VirCG_2015-01t_scaffold_1_prodigal-single.1__X__X__00061
Identity
- Kingdom:
- phage
Quality
84.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-87
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2lm9A00 | 1.20.58.970 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.80 | 49.0 | 4.59e-01 | 97.5% | 52.1% |
| 2fcwA00 | 1.20.81.10 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › RAP domain | 0.78 | 51.0 | 4.63e-01 | 71.2% | 50.9% |
| 3a11B01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.75 | 59.0 | 5.07e-01 | 85.0% | 64.0% |
| 4c1uA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.64 | 48.0 | 3.56e-01 | 80.0% | 66.8% |
| 4rk2A00 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.63 | 49.0 | 3.11e-01 | 82.5% | 53.7% |
| 2nn4A00 | 1.10.287.760 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like | 0.62 | 33.0 | 3.77e-01 | 87.5% | 67.7% |
| 5u56A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.62 | 40.0 | 3.65e-01 | 100.0% | 47.3% |
| 3rrkA02 | 1.20.1460.20 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › | 0.61 | 48.0 | 3.86e-01 | 83.7% | 44.5% |
| 3t69A02 | 3.30.420.310 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, C-terminal domain | 0.59 | 52.0 | 3.69e-01 | 95.0% | 38.9% |
| 2cyaA02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.58 | 49.0 | 4.35e-01 | 97.5% | 85.4% |
| 2el7A02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.57 | 49.0 | 4.67e-01 | 98.8% | 84.0% |
| 2oerA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.55 | 44.0 | 3.46e-01 | 90.0% | 60.9% |
| 2w0gA00 | 1.20.58.610 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Cdc37, Hsp90 binding domain | 0.53 | 45.0 | 3.97e-01 | 100.0% | 91.5% |
| 1ryuA00 | 1.10.150.60 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › ARID DNA-binding domain | 0.52 | 37.0 | 3.33e-01 | 96.2% | 50.8% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3355246 | 192.1.1.0 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain | 0.80 | 49.0 | 4.91e-01 | 100.0% | 61.3% |
| 4992707 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 63.0 | 5.18e-01 | 100.0% | 86.4% |
| 4200387 | 192.7.1.3 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Phe_tRNA-synt_N | 0.69 | 51.0 | 4.86e-01 | 100.0% | 67.8% |
| 4934608 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.68 | 59.0 | 4.98e-01 | 100.0% | 82.1% |
| 3337903 | 108.1.1.23 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › RST | 0.66 | 42.0 | 4.67e-01 | 72.5% | 81.5% |
| 3989298 | 601.19.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein | 0.66 | 58.0 | 4.55e-01 | 97.5% | 83.6% |
| 5073131 | 3684.1.1.0 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like | 0.65 | 55.0 | 4.93e-01 | 98.8% | 86.7% |
| 3253939 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.62 | 51.0 | 4.55e-01 | 93.8% | 87.5% |
| 3219299 | 633.21.1.0 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 | 0.59 | 43.0 | 3.58e-01 | 100.0% | 44.3% |
| 3894011 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.56 | 51.0 | 3.71e-01 | 100.0% | 98.6% |
| 4501767 | 1175.1.1.1 ↗ | alpha complex topology › Apolipoprotein N-acyltransferase transmembrane domain › Apolipoprotein N-acyltransferase transmembrane domain › Apolipoprotein N-acyltransferase transmembrane domain › LNT_N | 0.55 | 45.0 | 3.35e-01 | 96.2% | 49.6% |
| 3840063 | 1156.1.1.1 ↗ | alpha complex topology › EcoR124I HsdR C-terminal domain › EcoR124I HsdR C-terminal domain › EcoR124I HsdR C-terminal domain › EcoR124_C | 0.54 | 43.0 | 3.52e-01 | 86.3% | 96.7% |
D2
high
residues 96-165
Domain cluster:
representative
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1yarH00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.65 | 56.0 | 4.13e-01 | 100.0% | 93.6% |
| 3pf2A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 56.0 | 4.53e-01 | 100.0% | 68.3% |
| 4tpsA00 | 3.30.310.250 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Sporulation inhibitor of replication protein SirA | 0.64 | 50.0 | 4.13e-01 | 90.0% | 98.6% |
| 1tdqA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 48.0 | 4.40e-01 | 94.3% | 63.8% |
| 3kptA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.62 | 54.0 | 4.76e-01 | 100.0% | 74.5% |
| 6qm7N00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.61 | 52.0 | 3.75e-01 | 100.0% | 87.6% |
| 3wkmB01 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.60 | 42.0 | 3.91e-01 | 98.6% | 56.4% |
| 2db8A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 46.0 | 3.99e-01 | 94.3% | 53.6% |
| 1nbeB01 | 3.30.70.140 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aspartate carbamoyltransferase regulatory subunit, N-terminal domain | 0.60 | 53.0 | 4.86e-01 | 100.0% | 93.5% |
| 2d4zA00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.58 | 47.0 | 3.59e-01 | 90.0% | 74.6% |
| 1je6A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 46.0 | 4.26e-01 | 88.6% | 68.5% |
| 3oc9A00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.56 | 46.0 | 2.92e-01 | 92.9% | 61.5% |
| 1vm8B01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.55 | 47.0 | 2.96e-01 | 100.0% | 54.6% |
| 2cpjA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.55 | 42.0 | 3.79e-01 | 84.3% | 75.8% |
| 3ezjA02 | 3.30.1370.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › | 0.54 | 34.0 | 3.46e-01 | 71.4% | 63.2% |
| 2fgzA01 | 2.60.40.1130 | Mainly Beta › Sandwich › Immunoglobulin-like › Rab geranylgeranyltransferase alpha-subunit, insert domain | 0.54 | 46.0 | 4.03e-01 | 100.0% | 79.1% |
| 2vy0B00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 42.0 | 2.96e-01 | 90.0% | 58.6% |
| 3fhmA00 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.54 | 44.0 | 3.62e-01 | 92.9% | 56.6% |
| 3rbtD01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.54 | 38.0 | 3.19e-01 | 75.7% | 65.6% |
| 1zxeC02 | 1.10.510.10 | Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 | 0.54 | 37.0 | 2.87e-01 | 74.3% | 93.4% |
| 4njcA00 | 3.10.20.730 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNAP, epsilon subunit-like | 0.53 | 36.0 | 3.80e-01 | 77.1% | 83.3% |
| 2pn1A03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.53 | 45.0 | 3.74e-01 | 92.9% | 67.5% |
| 2p3yA03 | 2.60.40.1610 | Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF1254 | 0.53 | 46.0 | 3.65e-01 | 100.0% | 75.0% |
| 4v02C00 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.52 | 37.0 | 3.15e-01 | 75.7% | 83.6% |
| 2kgfA00 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.52 | 42.0 | 3.42e-01 | 91.4% | 93.6% |
| 1y2mD01 | 1.10.275.10 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) | 0.52 | 35.0 | 2.52e-01 | 70.0% | 55.9% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3675525 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.73 | 49.0 | 5.06e-01 | 85.7% | 72.1% |
| 3285401 | 3986.2.1.0 ↗ | a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd | 0.69 | 61.0 | 5.97e-01 | 97.1% | 90.7% |
| 5039677 | 206.1.3.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DNA_ligase_A_M | 0.64 | 52.0 | 3.75e-01 | 92.9% | 84.5% |
| 3538049 | 11.1.1.636 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › IL17_R_N | 0.63 | 52.0 | 3.91e-01 | 94.3% | 36.6% |
| 3666791 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.61 | 42.0 | 4.64e-01 | 77.1% | 100.0% |
| 4041354 | 304.38.1.1 ↗ | a+b two layers › Alpha-beta plaits › Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain › Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain › PyrI | 0.60 | 53.0 | 4.73e-01 | 100.0% | 93.0% |
| 4928533 | 375.1.4.2 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Aspartate carbamoyltransferase, Regulatory-chain, C-terminal domain › PyrI | 0.60 | 52.0 | 4.18e-01 | 97.1% | 64.5% |
| 3278361 | 7.1.1.0 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain | 0.59 | 40.0 | 3.64e-01 | 100.0% | 51.6% |
| 4984346 | 304.38.1.1 ↗ | a+b two layers › Alpha-beta plaits › Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain › Aspartate carbamoyltransferase, Regulatory-chain, N-terminal domain › PyrI | 0.59 | 49.0 | 4.55e-01 | 94.3% | 93.3% |
| 3319149 | 224.1.1.3 ↗ | a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Staygreen | 0.59 | 44.0 | 3.57e-01 | 85.7% | 86.5% |
| 3968712 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.59 | 45.0 | 4.35e-01 | 95.7% | 75.0% |
| 3323055 | 822.1.1.0 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain | 0.57 | 42.0 | 4.31e-01 | 98.6% | 87.7% |
| 4499256 | 101.8.1.2 ↗ | alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 | 0.57 | 40.0 | 2.94e-01 | 75.7% | 30.2% |
| 4490079 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.57 | 31.0 | 3.45e-01 | 97.1% | 67.3% |
| 4619775 | 206.1.3.11 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › GSH-S_ATP | 0.57 | 50.0 | 3.52e-01 | 94.3% | 40.7% |
| 3797738 | 3570.1.1.1 ↗ | a+b two layers › FAM3 superfamily › FAM3 superfamily › FAM3 superfamily › ILEI | 0.57 | 46.0 | 3.61e-01 | 91.4% | 53.2% |
| 4982929 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.57 | 32.0 | 3.57e-01 | 94.3% | 70.9% |
| 4134039 | 304.162.1.1 ↗ | a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH | 0.56 | 42.0 | 4.14e-01 | 80.0% | 97.3% |
| 4182696 | 2004.1.1.5 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran | 0.55 | 42.0 | 2.95e-01 | 82.9% | 65.4% |
| 3594014 | 2007.2.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II | 0.55 | 43.0 | 3.11e-01 | 91.4% | 88.3% |
| 3639077 | 247.1.1.23 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B_2+Lactamase_B_4 | 0.55 | 41.0 | 2.38e-01 | 82.9% | 40.9% |
| 1517883 | 65.1.1.0 ↗ | beta sandwiches › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases › Composite domain of metallo-dependent hydrolases | 0.54 | 33.0 | 3.48e-01 | 97.1% | 67.2% |
| 3632407 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 45.0 | 3.81e-01 | 91.4% | 81.2% |
| 4889364 | 304.56.1.3 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › Cas3_I-F_Cas2 | 0.54 | 41.0 | 3.62e-01 | 88.6% | 63.9% |
| 3971762 | 207.2.1.15 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › TPS | 0.54 | 37.0 | 2.35e-01 | 72.9% | 35.0% |
| 3192734 | 109.4.1.1360 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CBF, NOC3p | 0.54 | 37.0 | 2.24e-01 | 74.3% | 16.4% |
| 3701236 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.53 | 43.0 | 3.43e-01 | 88.6% | 51.4% |
| 1489336 | 207.5.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C | 0.52 | 37.0 | 3.18e-01 | 75.7% | 86.4% |
| 4950808 | 246.2.1.1 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos | 0.52 | 44.0 | 3.15e-01 | 98.6% | 33.3% |
| 3787619 | 206.1.3.21 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK | 0.51 | 43.0 | 3.66e-01 | 92.9% | 70.4% |