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CG_2015-01t_scaffold_1_prodigal-single.1__X__X__00114
Bact-VirCG_2015-01t_scaffold_1_prodigal-single.1__X__X__00114
Identity
- Kingdom:
- phage
Quality
97.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-115_211-249
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2kdoA01 | 3.30.1250.10 | Alpha Beta › 2-Layer Sandwich › Hypothetical 12.0 Kda Protein In Nam8-gar1 Intergenic Region; Chain: A; › Ribosome maturation protein SBDS, N-terminal domain | 0.58 | 30.0 | 3.64e-01 | 72.1% | 76.8% |
| 1ybxA00 | 3.30.1310.10 | Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain | 0.55 | 24.0 | 3.03e-01 | 86.4% | 67.0% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5081122 | 4056.1.1.0 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein | 0.53 | 23.0 | 2.73e-01 | 99.4% | 55.0% |
| 5023931 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.52 | 19.0 | 2.73e-01 | 85.1% | 70.0% |
| 4031403 | 243.3.1.72 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PF29898 | 0.52 | 20.0 | 2.98e-01 | 99.4% | 94.0% |
| 3717897 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.51 | 25.0 | 2.88e-01 | 100.0% | 61.7% |
D2
medium
residues 116-210
Domain cluster:
rep: Salt_Pond_R2_restored_H2O_MG_scaffold_2_prodigal-single.1__X__X__00152__D67-161