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CG_2015-01t_scaffold_1_prodigal-single.1__X__X__00236
Bact-VirCG_2015-01t_scaffold_1_prodigal-single.1__X__X__00236
Identity
- Kingdom:
- phage
Quality
92.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-59
Domain cluster:
rep: IMGVR_UViG_3300025669_000046-3300025669-Ga0208904_10002127__D11-57
D2
high
residues 63-123
Domain cluster:
rep: rifoxyc1_full_scaffold_3_prodigal-single.1__X__X__00232__D1-65
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2digA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.85 | 58.0 | 5.59e-01 | 70.5% | 80.9% |
| 2eqjA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.83 | 59.0 | 5.71e-01 | 73.8% | 83.3% |
| 4p5nA00 | 2.30.30.1060 | Mainly Beta › Roll › SH3 type barrels. › | 0.83 | 57.0 | 5.33e-01 | 72.1% | 93.2% |
| 3j7aF03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.75 | 54.0 | 5.11e-01 | 75.4% | 100.0% |
| 7c9rH01 | 3.90.50.10 | Alpha Beta › Alpha-Beta Complex › Photosynthetic Reaction Center; Chain H, domain 2 › Photosynthetic Reaction Center, subunit H, domain 2 | 0.74 | 58.0 | 4.38e-01 | 85.2% | 54.1% |
| 1rvjH02 | 3.90.50.10 | Alpha Beta › Alpha-Beta Complex › Photosynthetic Reaction Center; Chain H, domain 2 › Photosynthetic Reaction Center, subunit H, domain 2 | 0.74 | 58.0 | 4.51e-01 | 85.2% | 58.3% |
| 4ry2A01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.72 | 49.0 | 3.73e-01 | 70.5% | 39.7% |
| 1zq1A01 | 2.30.30.520 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 49.0 | 4.61e-01 | 73.8% | 87.0% |
| 7razA01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.69 | 50.0 | 4.48e-01 | 77.0% | 63.5% |
| 1ssfA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 42.0 | 4.43e-01 | 70.5% | 90.9% |
| 1yr1A00 | 3.40.50.10960 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.62 | 50.0 | 4.11e-01 | 91.8% | 61.3% |
| 2in5A00 | 2.40.360.10 | Mainly Beta › Beta Barrel › YmcC-like fold › YmcC-like | 0.61 | 44.0 | 3.10e-01 | 77.0% | 81.0% |
| 3teeA02 | 2.30.30.760 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 51.0 | 4.83e-01 | 93.4% | 100.0% |
| 3udfA03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.60 | 43.0 | 3.69e-01 | 75.4% | 89.5% |
| 1whzA00 | 3.30.920.30 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. | 0.59 | 42.0 | 4.09e-01 | 75.4% | 76.8% |
| 2ymsC00 | 2.40.10.480 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.59 | 44.0 | 4.19e-01 | 83.6% | 92.0% |
| 4oonA03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.58 | 41.0 | 3.49e-01 | 75.4% | 90.4% |
| 2ogqA01 | 3.30.1120.30 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain | 0.58 | 43.0 | 3.45e-01 | 80.3% | 85.7% |
| 3gasA01 | 3.20.180.10 | Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like | 0.58 | 40.0 | 3.74e-01 | 73.8% | 98.7% |
| 1ukfA00 | 3.90.70.20 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.58 | 46.0 | 3.37e-01 | 91.8% | 33.5% |
| 3jtzA00 | 3.30.160.390 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain | 0.58 | 46.0 | 4.34e-01 | 93.4% | 89.6% |
| 2o7iA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.56 | 45.0 | 3.41e-01 | 95.1% | 90.6% |
| 2codA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 39.0 | 3.44e-01 | 78.7% | 72.9% |
| 1hlcA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 42.0 | 3.42e-01 | 93.4% | 70.5% |
| 3wucB00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 41.0 | 3.31e-01 | 93.4% | 67.9% |
| 4z32C02 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.51 | 36.0 | 3.22e-01 | 78.7% | 79.8% |
| 5xbfA03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 34.0 | 3.12e-01 | 72.1% | 77.3% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3862126 | 4.1.1.236 ↗ | beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 | 0.90 | 61.0 | 6.21e-01 | 70.5% | 81.7% |
| 3609597 | 4.1.1.236 ↗ | beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 | 0.89 | 62.0 | 6.26e-01 | 72.1% | 85.0% |
| 3931904 | 4.1.1.236 ↗ | beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 | 0.87 | 60.0 | 6.37e-01 | 72.1% | 90.9% |
| 3443078 | 4.1.1.330 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O | 0.87 | 60.0 | 4.22e-01 | 72.1% | 63.4% |
| 3781711 | 4.1.1.236 ↗ | beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 | 0.86 | 61.0 | 6.44e-01 | 73.8% | 94.5% |
| 4225207 | 4.1.1.236 ↗ | beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 | 0.86 | 61.0 | 6.19e-01 | 73.8% | 83.3% |
| 3598284 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.86 | 60.0 | 6.28e-01 | 72.1% | 90.9% |
| 3428486 | 4.1.1.33 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_N | 0.83 | 59.0 | 5.28e-01 | 73.8% | 90.0% |
| 3363360 | 4.1.1.141 ↗ | beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor | 0.81 | 55.0 | 4.84e-01 | 70.5% | 61.2% |
| 3571487 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.79 | 56.0 | 5.24e-01 | 73.8% | 89.0% |
| 3404643 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.79 | 55.0 | 5.28e-01 | 73.8% | 92.9% |
| 3758025 | 4.1.1.38 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C | 0.78 | 55.0 | 4.34e-01 | 73.8% | 60.8% |
| 3553983 | 4.1.1.233 ↗ | beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N | 0.75 | 52.0 | 5.26e-01 | 72.1% | 93.3% |
| 4933205 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.74 | 53.0 | 4.67e-01 | 75.4% | 85.6% |
| 4646501 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 52.0 | 3.80e-01 | 73.8% | 43.2% |
| 4093911 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.73 | 49.0 | 4.62e-01 | 70.5% | 78.7% |
| 3662319 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.72 | 52.0 | 4.78e-01 | 77.0% | 86.3% |
| 1884741 | 4.1.1.130 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_19 | 0.72 | 49.0 | 5.05e-01 | 72.1% | 89.8% |
| 3961546 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.70 | 52.0 | 5.11e-01 | 78.7% | 84.6% |
| 4158712 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.69 | 47.0 | 4.54e-01 | 70.5% | 82.9% |
| 3486495 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.67 | 57.0 | 4.02e-01 | 91.8% | 41.1% |
| 3218646 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 46.0 | 4.49e-01 | 72.1% | 98.5% |
| 3775592 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.65 | 53.0 | 2.78e-01 | 85.2% | 42.1% |
| None | — | 0.64 | 51.0 | 2.74e-01 | 85.2% | 50.2% | |
| 4418620 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.63 | 49.0 | 2.68e-01 | 83.6% | 63.0% |
| 4945675 | 4.1.1.38 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C | 0.63 | 55.0 | 4.03e-01 | 95.1% | 58.7% |
| 4078549 | 4.1.1.38 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L2_C | 0.62 | 53.0 | 3.96e-01 | 95.1% | 58.7% |
| 3425564 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.61 | 45.0 | 2.69e-01 | 80.3% | 29.1% |
| 3257938 | 330.7.1.2 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin | 0.56 | 41.0 | 4.20e-01 | 80.3% | 93.3% |
| 4947543 | 330.7.1.2 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin | 0.56 | 43.0 | 4.07e-01 | 85.2% | 81.1% |
| 5002760 | 330.7.1.2 ↗ | a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin | 0.54 | 42.0 | 4.05e-01 | 85.2% | 85.7% |
D3
high
residues 136-227
Domain cluster:
rep: SR-VP_0-2_scaffold_141_4556078_prodigal-single.1__X__X__00088__D33-109
D4
high
residues 265-377
Domain cluster:
rep: rifcsphigho2-12_scaffold_combined_curated_prodigal-single.1__X__X__00233__D118-220
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qgpA00 | 1.10.30.50 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › | 0.68 | 46.0 | 5.27e-01 | 86.7% | 94.0% |
| 3m7kA00 | 3.30.40.220 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.64 | 56.0 | 5.15e-01 | 93.8% | 90.8% |
| 3mhsA01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.59 | 33.0 | 3.24e-01 | 73.5% | 49.6% |
| 3ihpA01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.57 | 30.0 | 3.05e-01 | 75.2% | 49.1% |
| 2kcmA00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 25.0 | 2.94e-01 | 71.7% | 59.5% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3277754 | 377.1.1.88 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH | 0.79 | 44.0 | 5.57e-01 | 75.2% | 90.0% |
| 3952818 | 378.1.1.27 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_5 | 0.79 | 44.0 | 5.40e-01 | 75.2% | 85.1% |
| 3950953 | 377.1.1.78 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH_5 | 0.78 | 44.0 | 5.53e-01 | 75.2% | 90.0% |
| 4986026 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.78 | 43.0 | 3.54e-01 | 73.5% | 33.5% |
| 4989310 | 378.1.1.27 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_5 | 0.77 | 42.0 | 3.49e-01 | 73.5% | 32.8% |
| 5070853 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.71 | 48.0 | 5.46e-01 | 83.2% | 91.8% |
| 185780 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.69 | 47.0 | 5.04e-01 | 85.0% | 80.4% |
| 2485694 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.68 | 45.0 | 4.31e-01 | 79.6% | 57.5% |
| 4941657 | 377.1.1.88 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › HNH | 0.67 | 43.0 | 5.24e-01 | 79.6% | 100.0% |
| 119462 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.63 | 55.0 | 5.09e-01 | 93.8% | 90.1% |
| 3489023 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.63 | 50.0 | 4.96e-01 | 88.5% | 80.0% |
| 4979945 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.60 | 52.0 | 5.10e-01 | 93.8% | 89.6% |
| 3781281 | 377.9.1.4 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-Mss51 | 0.59 | 31.0 | 3.66e-01 | 80.5% | 74.7% |
| 3249964 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.56 | 39.0 | 4.55e-01 | 77.9% | 100.0% |
| 4969429 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.56 | 47.0 | 4.20e-01 | 90.3% | 85.6% |
| 3587782 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.56 | 46.0 | 4.67e-01 | 88.5% | 90.0% |