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CG_2015-01t_scaffold_1_prodigal-single.1__X__X__00407
Bact-VirCG_2015-01t_scaffold_1_prodigal-single.1__X__X__00407
Identity
- Kingdom:
- phage
Quality
93.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-88
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4bwcA02 | 1.10.439.20 | Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Phospholipase B-like, domain 2 | 0.81 | 73.0 | 6.34e-01 | 98.7% | 90.6% |
| 2x1dA02 | 1.10.10.2120 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.80 | 62.0 | 6.35e-01 | 80.8% | 95.9% |
| 1cp9A01 | 1.10.439.10 | Mainly Alpha › Orthogonal Bundle › Penicillin Amidohydrolase; domain 1 › Penicillin Amidohydrolase, domain 1 | 0.78 | 70.0 | 5.69e-01 | 100.0% | 84.9% |
| 1xl7A01 | 1.10.275.20 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Choline/Carnitine o-acyltransferase | 0.55 | 37.0 | 3.42e-01 | 70.5% | 58.3% |
| 2ef8A00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.54 | 37.0 | 3.64e-01 | 70.5% | 96.4% |
| 7w5lA01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.53 | 44.0 | 3.16e-01 | 94.9% | 76.8% |
| 3c7jA02 | 1.20.120.530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like | 0.53 | 41.0 | 3.39e-01 | 85.9% | 86.3% |
| 1x2nA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.51 | 31.0 | 3.56e-01 | 79.5% | 81.7% |
| 2xzeB00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.51 | 39.0 | 3.25e-01 | 89.7% | 47.1% |
| 3on2A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.51 | 38.0 | 2.96e-01 | 83.3% | 46.3% |
| 2vwaA00 | 1.20.58.1330 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Plasmodium falciparum UIS3 membrane protein | 0.50 | 38.0 | 3.58e-01 | 91.0% | 65.7% |
| 4edgA03 | 1.20.50.20 | Mainly Alpha › Up-down Bundle › Pheromone ER-1 › DnaG, RNA polymerase domain, helical bundle | 0.50 | 36.0 | 4.08e-01 | 92.3% | 100.0% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3186755 | 210.1.2.4 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › AAT | 0.90 | 85.0 | 5.18e-01 | 100.0% | 20.7% |
| 1770810 | 210.1.2.4 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › AAT | 0.89 | 84.0 | 5.24e-01 | 100.0% | 24.4% |
| 3190112 | 210.1.2.4 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › AAT | 0.84 | 78.0 | 4.94e-01 | 100.0% | 23.9% |
| 3394746 | 210.1.2.4 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › AAT | 0.83 | 77.0 | 4.82e-01 | 100.0% | 23.3% |
| 3205783 | 210.1.2.4 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › AAT | 0.83 | 77.0 | 4.84e-01 | 100.0% | 26.2% |
| 3332934 | 210.1.2.4 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › AAT | 0.82 | 76.0 | 4.80e-01 | 100.0% | 25.4% |
| 3434600 | 210.1.2.0 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain | 0.80 | 68.0 | 6.58e-01 | 91.0% | 96.5% |
| 5068881 | 210.1.2.0 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain | 0.79 | 73.0 | 4.50e-01 | 100.0% | 22.1% |
| 4794011 | 210.1.2.7 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › NAAA-beta | 0.76 | 68.0 | 6.21e-01 | 100.0% | 80.4% |
| 3927705 | 210.1.2.3 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › CBAH,NAAA-beta | 0.71 | 63.0 | 4.03e-01 | 100.0% | 47.9% |
| 3285325 | 7014.1.1.2 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › TauE | 0.65 | 48.0 | 4.07e-01 | 92.3% | 47.7% |
| 3339204 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.55 | 40.0 | 4.19e-01 | 91.0% | 82.2% |
| 3226377 | 7022.1.1.1 ↗ | alpha bundles › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › central core domain of D-alanyl transfer protein › MBOAT | 0.53 | 45.0 | 3.46e-01 | 98.7% | 87.7% |
| 3804333 | 109.4.1.420 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR | 0.51 | 36.0 | 2.81e-01 | 79.5% | 29.5% |
D2
medium
residues 91-219
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03417.22 best | AAT | 29.1 | 1.10e-06 | 89.9% | 46.2% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2x1cB01 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.90 | 85.0 | 6.38e-01 | 100.0% | 45.4% |
| 5u81A01 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.86 | 81.0 | 6.27e-01 | 100.0% | 61.0% |
| 1fm2B01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.85 | 78.0 | 5.99e-01 | 96.9% | 48.5% |
| 4bthB01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.82 | 74.0 | 5.67e-01 | 96.9% | 46.2% |
| 2oqcA00 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.81 | 74.0 | 5.43e-01 | 96.9% | 49.2% |
| 3hbcA00 | 3.60.60.10 | Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A | 0.79 | 73.0 | 5.41e-01 | 99.2% | 48.9% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3186755 | 210.1.2.4 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › AAT | 0.93 | 90.0 | 6.02e-01 | 100.0% | 37.6% |
| 5063512 | 210.1.2.0 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain | 0.93 | 89.0 | 6.08e-01 | 100.0% | 36.4% |
| 4978399 | 210.1.2.4 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › AAT | 0.89 | 85.0 | 6.48e-01 | 100.0% | 50.6% |
| 3205783 | 210.1.2.4 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › AAT | 0.88 | 84.0 | 5.79e-01 | 100.0% | 35.9% |
| 3194286 | 210.1.2.4 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › AAT | 0.87 | 83.0 | 5.74e-01 | 100.0% | 37.9% |
| 3190112 | 210.1.2.4 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › AAT | 0.87 | 83.0 | 5.81e-01 | 100.0% | 37.2% |
| 1770810 | 210.1.2.4 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › AAT | 0.87 | 83.0 | 5.81e-01 | 100.0% | 36.9% |
| 4031949 | 210.1.2.4 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › AAT | 0.85 | 67.0 | 4.84e-01 | 100.0% | 32.8% |
| 3200015 | 210.1.2.4 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › AAT | 0.84 | 71.0 | 6.35e-01 | 88.4% | 71.2% |
| 3961473 | 210.1.2.2 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › CBAH | 0.81 | 63.0 | 4.69e-01 | 81.4% | 45.0% |
| None | — | 0.81 | 74.0 | 5.37e-01 | 97.7% | 47.7% | |
| 3076037 | 210.1.2.2 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › CBAH | 0.80 | 73.0 | 5.40e-01 | 96.9% | 47.6% |
| None | — | 0.80 | 72.0 | 5.31e-01 | 96.9% | 46.1% | |
| 5047706 | 210.1.2.4 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › AAT | 0.79 | 74.0 | 5.66e-01 | 98.4% | 47.4% |
| 3816821 | 210.1.2.8 ↗ | a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › TANGO2 | 0.76 | 70.0 | 5.50e-01 | 98.4% | 50.6% |
| 3710981 | 77.2.1.1 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN | 0.68 | 35.0 | 3.53e-01 | 76.0% | 48.1% |
| 3594212 | 77.2.1.1 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN | 0.62 | 34.0 | 3.18e-01 | 73.6% | 43.8% |
| 3495981 | 77.2.1.1 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN | 0.61 | 35.0 | 3.26e-01 | 76.7% | 45.0% |
| 3465279 | 77.2.1.1 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN | 0.61 | 34.0 | 3.50e-01 | 75.2% | 56.0% |
| 3716096 | 77.2.1.1 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN | 0.61 | 36.0 | 3.53e-01 | 75.2% | 55.6% |
| 3707357 | 77.2.1.1 ↗ | beta meanders › open-sided beta-meander › Histone H3 K4-specific methyltransferase SET7/9-N › Histone H3 K4-specific methyltransferase SET7/9-N › MORN | 0.60 | 36.0 | 2.97e-01 | 75.2% | 34.2% |
| 3754362 | 3426.1.1.0 ↗ | beta meanders › Telethonin › Telethonin › Telethonin | 0.56 | 25.0 | 3.62e-01 | 82.2% | 91.7% |