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CG_2015-01t_scaffold_1_prodigal-single.1__X__X__00442
Bact-VirCG_2015-01t_scaffold_1_prodigal-single.1__X__X__00442
Identity
- Kingdom:
- phage
Quality
87.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 29-115_186-290
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2fu2A00 | 1.20.1440.50 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like | 0.60 | 24.0 | 3.73e-01 | 91.1% | 91.0% |
| 4zi3D00 | 1.20.1520.10 | Mainly Alpha › Up-down Bundle › Adp-ribosylation factor-like protein 2-binding protein fold › ADP-ribosylation factor-like 2-binding protein, domain | 0.57 | 33.0 | 3.90e-01 | 80.2% | 83.6% |
| 6k6iA00 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.54 | 33.0 | 3.23e-01 | 90.6% | 52.1% |
| 4xr7F02 | 1.10.287.3700 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.52 | 21.0 | 2.85e-01 | 71.9% | 71.1% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5004294 | 4038.1.1.0 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein | 0.70 | 65.0 | 5.68e-01 | 96.9% | 89.6% |
| 3944936 | 4038.1.1.8 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Abc1-like | 0.63 | 58.0 | 4.91e-01 | 98.4% | 80.0% |
| 3487890 | 3069.1.1.0 ↗ | alpha arrays › BART › BART › BART | 0.60 | 34.0 | 4.24e-01 | 79.2% | 91.3% |
| 3948092 | 4038.1.1.0 ↗ | alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein | 0.54 | 49.0 | 4.81e-01 | 96.4% | 100.0% |
D2
medium
residues 116-185
Domain cluster:
rep: BML_coassembly_scaffold_50_prodigal-single.1__X__X__00190__D183-257
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6rwcA02 | 2.20.25.590 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.64 | 33.0 | 4.12e-01 | 98.6% | 87.2% |
| 2iz4A02 | 2.20.25.590 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.63 | 32.0 | 3.87e-01 | 98.6% | 78.6% |
| 2epbA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.60 | 38.0 | 3.85e-01 | 92.9% | 64.7% |
| 1yw5A01 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.60 | 34.0 | 3.58e-01 | 98.6% | 61.9% |
| 8jx6A02 | 2.30.30.780 | Mainly Beta › Roll › SH3 type barrels. › | 0.57 | 43.0 | 3.78e-01 | 81.4% | 72.8% |
| 3f3fD01 | 2.20.25.500 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.55 | 29.0 | 3.32e-01 | 92.9% | 68.6% |
| 4dgwC00 | 2.60.40.2690 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 42.0 | 3.42e-01 | 90.0% | 84.4% |
| 1lf7A00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 38.0 | 3.01e-01 | 81.4% | 89.0% |
| 3g2bA00 | 1.10.10.1150 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) | 0.51 | 36.0 | 3.40e-01 | 75.7% | 96.7% |
| 6yllA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 40.0 | 3.83e-01 | 87.1% | 91.5% |
| 5cemA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 39.0 | 3.90e-01 | 92.9% | 82.2% |
| 1ft9A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 42.0 | 4.15e-01 | 98.6% | 87.3% |
| 1qmgB01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 38.0 | 2.89e-01 | 88.6% | 88.4% |
| 4djhA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.51 | 39.0 | 2.72e-01 | 88.6% | 69.7% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3454406 | 375.1.1.69 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_12 | 0.77 | 32.0 | 3.81e-01 | 82.9% | 54.0% |
| 4034031 | 4056.1.1.0 ↗ | beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein | 0.75 | 43.0 | 4.52e-01 | 100.0% | 61.5% |
| 3307036 | 375.1.1.69 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_12 | 0.75 | 33.0 | 3.90e-01 | 84.3% | 58.0% |
| 4004358 | 252.2.1.3 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_1 | 0.73 | 41.0 | 4.77e-01 | 95.7% | 78.0% |
| 3703176 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.69 | 36.0 | 4.35e-01 | 97.1% | 79.5% |
| 3730089 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.65 | 35.0 | 4.03e-01 | 95.7% | 73.5% |
| 3605879 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.65 | 37.0 | 4.35e-01 | 98.6% | 86.7% |
| 3626364 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.65 | 42.0 | 3.55e-01 | 97.1% | 40.9% |
| 3665481 | 64.1.1.1 ↗ | beta meanders › WW domain-like › WW domain › WW domain › WW | 0.64 | 33.0 | 3.86e-01 | 98.6% | 73.3% |
| 3737235 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.62 | 33.0 | 3.46e-01 | 91.4% | 53.8% |
| 4026264 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.60 | 35.0 | 2.78e-01 | 92.9% | 26.7% |
| 4011699 | 4224.1.1.0 ↗ | few secondary structure elements › CHY zinc finger › CHY zinc finger › CHY zinc finger | 0.60 | 28.0 | 3.03e-01 | 85.7% | 51.7% |
| 3715091 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.57 | 34.0 | 3.55e-01 | 98.6% | 63.1% |
| 3404585 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.56 | 31.0 | 3.48e-01 | 98.6% | 72.0% |
| 3702898 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.55 | 47.0 | 3.52e-01 | 98.6% | 82.6% |
| 3198073 | 9.1.1.56 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › P5-ATPase | 0.54 | 33.0 | 2.86e-01 | 90.0% | 38.2% |
| 5029251 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.52 | 44.0 | 4.23e-01 | 100.0% | 91.8% |
| 3168705 | 101.1.2.24 ↗ | alpha arrays › HTH › HTH › winged helix domain › MAGE | 0.51 | 38.0 | 2.98e-01 | 81.4% | 41.8% |
| 4932612 | 251.1.1.1 ↗ | a+b two layers › FYSH domain › FYSH domain › FYSH domain › SBDS | 0.51 | 39.0 | 3.59e-01 | 84.3% | 100.0% |
| 3906040 | 9.1.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin | 0.51 | 36.0 | 2.81e-01 | 75.7% | 89.4% |
| 3696472 | 109.4.1.555 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Xpo1,Exportin-5 | 0.51 | 37.0 | 2.06e-01 | 81.4% | 12.0% |
| 3612241 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 43.0 | 4.12e-01 | 100.0% | 89.4% |