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CG_2015-01t_scaffold_1_prodigal-single.1__X__X__00444
Bact-VirCG_2015-01t_scaffold_1_prodigal-single.1__X__X__00444
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 15-79
Domain cluster:
rep: H1c1_full_scaffold_271_prodigal-single.1__X__X__00350__D12-79
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4l8nA03 | 3.30.160.670 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.67 | 48.0 | 3.66e-01 | 76.9% | 90.9% |
| 3kxtA00 | 2.30.30.610 | Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 | 0.61 | 46.0 | 4.94e-01 | 90.8% | 94.6% |
| 2l89A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 44.0 | 3.77e-01 | 76.9% | 52.8% |
| 2wbnA00 | 3.30.420.280 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.60 | 52.0 | 3.82e-01 | 100.0% | 50.0% |
| 1f9qD00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.59 | 41.0 | 4.12e-01 | 86.2% | 71.2% |
| 3lxqA01 | 3.30.1120.80 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.59 | 42.0 | 3.75e-01 | 78.5% | 58.6% |
| 2ab5A02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.58 | 45.0 | 3.65e-01 | 86.2% | 76.9% |
| 1l3aA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.58 | 43.0 | 3.26e-01 | 80.0% | 83.1% |
| 3ddmA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.57 | 44.0 | 3.58e-01 | 83.1% | 45.6% |
| 1azpA00 | 2.40.50.40 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.57 | 44.0 | 4.48e-01 | 100.0% | 89.4% |
| 2rajA02 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.55 | 41.0 | 3.38e-01 | 81.5% | 64.3% |
| 6qm7A00 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.55 | 43.0 | 2.96e-01 | 86.2% | 86.5% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 39.0 | 3.88e-01 | 83.1% | 72.5% |
| 2lezA00 | 3.30.2450.10 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 | 0.55 | 42.0 | 3.57e-01 | 87.7% | 89.2% |
| 2lkoA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 45.0 | 3.62e-01 | 93.8% | 65.9% |
| 2qkdA03 | 2.20.25.420 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain | 0.55 | 34.0 | 3.70e-01 | 80.0% | 80.4% |
| 2crfA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 48.0 | 3.90e-01 | 100.0% | 81.6% |
| 2i99A01 | 3.30.1780.10 | Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 | 0.53 | 43.0 | 3.37e-01 | 92.3% | 88.0% |
| 3mcrA00 | 3.30.460.80 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit | 0.53 | 44.0 | 3.47e-01 | 98.5% | 48.7% |
| 1asuA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.53 | 36.0 | 2.80e-01 | 73.8% | 42.0% |
| 3ebwA01 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.52 | 44.0 | 3.56e-01 | 100.0% | 64.8% |
| 3kztA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 36.0 | 2.99e-01 | 75.4% | 62.1% |
| 2o8bB02 | 3.30.420.110 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain | 0.52 | 39.0 | 2.89e-01 | 83.1% | 45.2% |
| 4qmgC01 | 2.40.50.90 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 37.0 | 2.83e-01 | 76.9% | 59.1% |
| 4oxwA00 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.51 | 36.0 | 3.26e-01 | 80.0% | 76.4% |
| 2lt1A00 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.51 | 38.0 | 3.73e-01 | 89.2% | 72.0% |
| 4wj7D00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 42.0 | 3.48e-01 | 93.8% | 52.8% |
| 2ia1A01 | 3.30.500.20 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › BH3703-like domains | 0.51 | 43.0 | 3.66e-01 | 100.0% | 86.6% |
| 3ef2A02 | 3.30.460.70 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.51 | 41.0 | 3.42e-01 | 98.5% | 89.9% |
| 1luiA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.51 | 35.0 | 3.07e-01 | 73.8% | 71.3% |
| 1a9xA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.51 | 38.0 | 2.77e-01 | 84.6% | 48.4% |
| 3ii7A00 | 2.120.10.80 | Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller | 0.51 | 37.0 | 2.52e-01 | 80.0% | 50.3% |
| 6whpA01 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.51 | 38.0 | 2.70e-01 | 90.8% | 69.0% |
| 1q48A00 | 3.90.1010.10 | Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › | 0.51 | 38.0 | 3.09e-01 | 83.1% | 79.9% |
| 7oufB01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.50 | 38.0 | 2.99e-01 | 83.1% | 61.1% |
| 3j7aZ00 | 3.30.1230.20 | Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 | 0.50 | 35.0 | 3.41e-01 | 73.8% | 81.9% |
ECOD (49)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5041400 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.68 | 45.0 | 5.11e-01 | 78.5% | 100.0% |
| 3614906 | 4.26.1.8 ↗ | beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Saf4_Yju2 | 0.66 | 52.0 | 5.08e-01 | 86.2% | 90.0% |
| 3269772 | 2004.1.1.198 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 | 0.65 | 47.0 | 2.83e-01 | 76.9% | 12.3% |
| 5018717 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.63 | 47.0 | 4.95e-01 | 80.0% | 100.0% |
| 5048750 | 221.4.1.1 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX | 0.63 | 52.0 | 3.76e-01 | 98.5% | 74.4% |
| 3457412 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.63 | 43.0 | 2.88e-01 | 72.3% | 21.1% |
| 3370941 | 295.1.1.35 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › FBA_1 | 0.62 | 45.0 | 3.34e-01 | 75.4% | 47.3% |
| 3322492 | 5.1.4.550 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 | 0.62 | 46.0 | 2.99e-01 | 80.0% | 46.3% |
| 3297981 | 252.1.1.1 ↗ | a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD | 0.62 | 37.0 | 3.95e-01 | 76.9% | 69.1% |
| 5031616 | 4.26.1.0 ↗ | beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 | 0.62 | 45.0 | 4.75e-01 | 78.5% | 96.4% |
| 5049449 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.62 | 42.0 | 4.60e-01 | 78.5% | 94.0% |
| 3751411 | 376.1.1.20 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX | 0.61 | 46.0 | 4.17e-01 | 81.5% | 62.2% |
| 3643549 | 4.1.1.139 ↗ | beta barrels › SH3 › SH3 › SH3 › IF5A-like_N | 0.61 | 44.0 | 4.15e-01 | 83.1% | 63.7% |
| 4990492 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.60 | 41.0 | 4.49e-01 | 78.5% | 96.0% |
| 3456692 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.59 | 39.0 | 4.04e-01 | 81.5% | 72.9% |
| 3260369 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.59 | 39.0 | 4.41e-01 | 98.5% | 100.0% |
| 4026978 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.58 | 41.0 | 2.85e-01 | 75.4% | 79.2% |
| 3561019 | 2484.5.1.3 ↗ | mixed a+b and a/b › Ribonuclease H-like › RNaseH-like domain in reverse transcriptase › RNaseH-like domain in reverse transcriptase › RT_RNaseH_2 | 0.58 | 51.0 | 4.09e-01 | 98.5% | 87.7% |
| 5077499 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.58 | 42.0 | 2.60e-01 | 76.9% | 16.1% |
| 5045117 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 43.0 | 4.52e-01 | 86.2% | 86.7% |
| 4997059 | 4.1.1.139 ↗ | beta barrels › SH3 › SH3 › SH3 › IF5A-like_N | 0.58 | 43.0 | 4.17e-01 | 83.1% | 72.0% |
| 3356297 | 5.1.2.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed | 0.57 | 40.0 | 3.22e-01 | 73.8% | 45.4% |
| 4954871 | 264.2.1.0 ↗ | beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain | 0.57 | 49.0 | 4.13e-01 | 98.5% | 84.3% |
| 4946993 | 4.1.1.479 ↗ | beta barrels › SH3 › SH3 › SH3 › eIF-5a | 0.56 | 41.0 | 4.06e-01 | 81.5% | 74.3% |
| 3289254 | 220.1.1.82 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_6 | 0.56 | 48.0 | 4.33e-01 | 100.0% | 91.6% |
| 3475813 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 34.0 | 3.80e-01 | 75.4% | 86.7% |
| 4931072 | 4.1.1.139 ↗ | beta barrels › SH3 › SH3 › SH3 › IF5A-like_N | 0.55 | 41.0 | 4.02e-01 | 81.5% | 75.7% |
| 3774525 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.55 | 40.0 | 3.03e-01 | 81.5% | 44.4% |
| 3485727 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.54 | 40.0 | 3.65e-01 | 81.5% | 83.2% |
| 4820874 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.54 | 38.0 | 3.27e-01 | 75.4% | 53.4% |
| 3903931 | 5.1.3.6 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 | 0.54 | 40.0 | 2.62e-01 | 78.5% | 79.6% |
| 3651210 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.54 | 35.0 | 3.67e-01 | 83.1% | 71.7% |
| 3782256 | 2004.1.1.429 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_15 | 0.54 | 38.0 | 2.40e-01 | 75.4% | 18.1% |
| 5039189 | 2.1.1.287 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Zn_ribbon_TiaS | 0.54 | 39.0 | 3.10e-01 | 98.5% | 34.2% |
| 3718300 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 40.0 | 3.92e-01 | 93.8% | 72.0% |
| 3837308 | 5.1.3.6 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 | 0.53 | 39.0 | 2.57e-01 | 80.0% | 48.5% |
| 3739035 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.53 | 40.0 | 4.22e-01 | 83.1% | 93.3% |
| 3982054 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.52 | 39.0 | 2.85e-01 | 81.5% | 37.4% |
| 3297271 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 44.0 | 2.95e-01 | 100.0% | 24.1% |
| 4929448 | 2484.1.1.107 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS1595 | 0.52 | 39.0 | 3.12e-01 | 84.6% | 55.2% |
| 4081551 | 316.1.1.2 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 | 0.52 | 40.0 | 2.95e-01 | 84.6% | 61.7% |
| 3645007 | 5.1.10.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed | 0.52 | 38.0 | 3.50e-01 | 80.0% | 70.6% |
| 5047088 | 5.1.2.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed | 0.51 | 38.0 | 2.72e-01 | 81.5% | 62.7% |
| 3509448 | 389.1.1.0 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin | 0.51 | 31.0 | 3.70e-01 | 73.8% | 100.0% |
| 4768540 | 4059.1.1.1 ↗ | a+b complex topology › Serpins › Serpins › Serpins › Serpin | 0.51 | 41.0 | 2.84e-01 | 92.3% | 32.8% |
| 4982249 | 331.3.1.0 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like | 0.51 | 36.0 | 3.23e-01 | 81.5% | 51.6% |
| 3269253 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.51 | 42.0 | 3.53e-01 | 93.8% | 60.9% |
| 3972580 | 331.1.1.3 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › AlkA_N | 0.50 | 35.0 | 3.33e-01 | 73.8% | 78.8% |
| 3541711 | 220.1.1.5 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PID | 0.50 | 42.0 | 3.14e-01 | 100.0% | 72.8% |