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CG_2015-01t_scaffold_1_prodigal-single.1__X__X__00484

Bact-Vir

CG_2015-01t_scaffold_1_prodigal-single.1__X__X__00484

Identity

Kingdom:
phage

Quality

71.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-52
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4alzA03 3.30.70.1770 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.75 47.0 4.10e-01 95.2% 42.2%
3ramA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.74 49.0 3.54e-01 100.0% 24.6%
1ffvB03 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.72 49.0 3.22e-01 71.4% 19.3%
5hvqC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 53.0 4.12e-01 88.1% 72.4%
5k8mA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 47.0 3.33e-01 73.8% 69.5%
2vlaA03 1.10.10.2090 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.67 49.0 3.54e-01 100.0% 27.5%
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 50.0 3.91e-01 83.3% 44.2%
3pw3D00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.66 55.0 3.28e-01 97.6% 30.9%
4l80D00 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.65 49.0 2.93e-01 90.5% 10.8%
3r4iA02 6.10.140.960 Special › Helix non-globular › Helix Hairpins › 0.65 49.0 4.56e-01 90.5% 63.3%
1gkuB06 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.64 50.0 3.42e-01 88.1% 43.6%
1yjgA00 1.20.120.240 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Lipoprotein, type 6 0.64 57.0 3.80e-01 100.0% 49.0%
1oltA02 1.10.10.920 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.63 49.0 4.05e-01 88.1% 97.5%
1c0wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 51.0 4.26e-01 90.5% 89.0%
1jp4A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.63 52.0 3.56e-01 100.0% 77.5%
2x4hA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 47.0 3.38e-01 100.0% 27.1%
1o7fA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 48.0 3.36e-01 92.9% 59.6%
3fxqB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 47.0 3.70e-01 88.1% 40.0%
2fnaA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 51.0 3.29e-01 100.0% 20.7%
5y2vC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 43.0 3.49e-01 78.6% 41.2%
7dklA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 51.0 3.81e-01 100.0% 92.1%
1i7dA02 1.10.460.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 0.60 45.0 3.09e-01 88.1% 48.3%
2xseA00 1.20.120.1440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › JBP1, DNA-binding domain 0.59 49.0 3.35e-01 95.2% 54.7%
6g1dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 42.0 3.49e-01 78.6% 41.5%
3cuqB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 46.0 4.06e-01 92.9% 65.2%
3td7A02 1.20.120.1250 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Sulfhydryl oxidase R596, ORFan domain 0.59 50.0 3.53e-01 97.6% 32.4%
1in4A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 44.0 3.83e-01 85.7% 60.3%
5zyrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 44.0 3.13e-01 88.1% 29.8%
5fo5A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 48.0 3.81e-01 92.9% 45.5%
1kgqA01 1.10.166.10 Mainly Alpha › Orthogonal Bundle › Tetrahydrodipicolinate-N-succinyltransferase; Chain A, domain 1 › Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain 0.58 50.0 4.22e-01 97.6% 65.7%
4uhiA01 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.58 46.0 2.73e-01 100.0% 11.2%
3hhgE01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 45.0 3.60e-01 88.1% 42.0%
3szpA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 47.0 3.68e-01 92.9% 42.7%
3draB00 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.58 49.0 2.89e-01 97.6% 90.7%
7pzaA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 46.0 3.78e-01 95.2% 91.9%
3h5kA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.55 42.0 2.87e-01 95.2% 20.9%
2esnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 44.0 3.43e-01 95.2% 41.6%
4kkiA02 2.170.130.30 Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › 0.55 43.0 3.29e-01 90.5% 57.7%
3e9lA02 1.20.80.40 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › Prp8 RNase H domain, fingers region 0.53 43.0 3.41e-01 95.2% 45.3%
3gmiA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.50 43.0 2.73e-01 97.6% 32.0%
ECOD (75)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4014117 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.73 55.0 3.34e-01 90.5% 13.2%
4939589 2002.1.1.57 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › URO-D 0.72 52.0 3.01e-01 78.6% 98.9%
3583261 4357.1.1.0 beta barrels › WWE domain › WWE domain › WWE domain 0.71 55.0 4.89e-01 90.5% 72.3%
3213629 2002.1.1.111 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI 0.71 55.0 3.32e-01 90.5% 12.8%
4956464 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 56.0 4.43e-01 88.1% 63.5%
5076781 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 51.0 3.73e-01 83.3% 59.4%
3731014 2002.1.1.111 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI 0.70 57.0 3.43e-01 97.6% 14.4%
3973740 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.69 56.0 4.25e-01 90.5% 41.0%
3973617 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.67 50.0 3.14e-01 90.5% 13.7%
4580138 323.1.1.6 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Carn_acyltransf 0.67 57.0 3.16e-01 100.0% 12.8%
3974739 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 50.0 3.94e-01 85.7% 44.4%
3281989 2002.1.1.111 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI 0.65 53.0 3.28e-01 97.6% 15.1%
3981659 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.65 51.0 3.99e-01 88.1% 43.3%
3511772 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 51.0 4.17e-01 92.9% 51.8%
5038874 5081.1.1.1 alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.64 55.0 3.60e-01 100.0% 70.3%
3978577 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.63 47.0 3.68e-01 83.3% 40.0%
3284557 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.63 47.0 3.61e-01 83.3% 39.0%
3657647 1015.1.1.0 alpha complex topology › Insulin-induced gene (Insig) homologs › Insulin-induced gene (Insig) homologs › Insulin-induced gene (Insig) homologs 0.62 50.0 3.33e-01 100.0% 46.2%
4032183 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.62 48.0 3.93e-01 85.7% 48.8%
4257661 3001.1.1.1 alpha arrays › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › THDPS_N_2 0.62 50.0 3.93e-01 90.5% 47.8%
4588125 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.62 48.0 3.94e-01 85.7% 48.8%
3187789 2002.1.1.111 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI 0.62 48.0 2.94e-01 97.6% 12.2%
3280201 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.62 48.0 3.76e-01 85.7% 43.3%
4009354 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.62 48.0 3.82e-01 90.5% 41.1%
3883092 101.1.2.12 alpha arrays › HTH › HTH › winged helix domain › DEP 0.61 53.0 3.87e-01 100.0% 79.2%
4030795 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.61 44.0 3.55e-01 78.6% 40.0%
4222499 101.19.1.0 alpha arrays › HTH › C-terminal subdomain in oxygen-independent coproporphyrinogen III oxidase HemN › C-terminal subdomain in oxygen-independent coproporphyrinogen III oxidase HemN 0.61 48.0 3.88e-01 90.5% 86.7%
3941586 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.61 45.0 3.70e-01 81.0% 45.0%
3963507 4275.1.1.1 alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Phage_connect_1 0.61 53.0 3.94e-01 100.0% 43.6%
3969371 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 46.0 3.62e-01 83.3% 41.1%
3187973 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.61 49.0 2.86e-01 92.9% 63.4%
3970001 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 46.0 3.65e-01 83.3% 41.1%
3945690 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.61 49.0 3.84e-01 90.5% 42.2%
5002248 101.1.2.136 alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.61 49.0 3.62e-01 92.9% 40.0%
3978224 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.61 45.0 3.60e-01 83.3% 41.1%
4370821 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.61 47.0 3.84e-01 88.1% 47.1%
3639147 223.1.1.21 a+b three layers › Profilin-like › sensor domains › sensor domains › HODM_asu-like 0.61 52.0 3.12e-01 100.0% 13.8%
5023662 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.61 46.0 3.78e-01 83.3% 47.5%
4176786 2002.1.1.102 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP 0.60 51.0 3.05e-01 100.0% 13.1%
3945660 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.60 48.0 3.86e-01 90.5% 45.9%
5019754 101.1.2.14 alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.60 45.0 3.29e-01 100.0% 29.2%
3973326 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.60 47.0 3.78e-01 90.5% 43.3%
3970777 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 47.0 3.71e-01 90.5% 41.1%
3970719 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 49.0 4.01e-01 95.2% 48.8%
3737536 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.60 45.0 2.81e-01 88.1% 33.8%
4267416 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.60 47.0 3.57e-01 88.1% 40.0%
3279636 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.60 46.0 3.60e-01 88.1% 40.0%
3966780 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 45.0 3.62e-01 83.3% 40.0%
3989440 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.59 46.0 3.68e-01 90.5% 41.1%
3969385 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 45.0 3.69e-01 88.1% 45.0%
4954531 2004.1.1.152 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › KAP_NTPase 0.59 50.0 3.23e-01 100.0% 20.0%
3942028 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.59 49.0 3.88e-01 95.2% 44.4%
3193439 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.59 48.0 2.97e-01 97.6% 70.3%
4664006 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.59 47.0 3.73e-01 90.5% 44.4%
4599024 3001.1.1.1 alpha arrays › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › THDPS_N_2 0.59 51.0 4.03e-01 97.6% 54.1%
3970108 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 45.0 3.60e-01 88.1% 75.6%
3844491 109.6.1.1 alpha superhelices › Repetitive alpha hairpins › Ras GEF › Ras GEF › RasGEF 0.59 48.0 2.90e-01 92.9% 18.7%
4979216 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 45.0 3.59e-01 88.1% 92.2%
4104885 3001.1.1.1 alpha arrays › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › THDPS_N_2 0.58 49.0 3.82e-01 97.6% 48.4%
3284225 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.57 46.0 3.84e-01 92.9% 50.0%
3941446 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.57 46.0 3.73e-01 92.9% 49.4%
3943559 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.57 44.0 3.51e-01 88.1% 41.1%
4270411 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.57 46.0 3.61e-01 92.9% 43.2%
4185875 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.57 45.0 3.65e-01 90.5% 47.1%
4659871 3001.1.1.1 alpha arrays › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › THDPS_N_2 0.57 44.0 3.47e-01 100.0% 38.9%
4584593 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.56 46.0 3.66e-01 92.9% 44.4%
4026856 4984.1.1.3 alpha bundles › Duffy-binding-like domain, C-terminal subdomain › Duffy-binding-like domain, C-terminal subdomain › Duffy-binding-like domain, C-terminal subdomain › PFEMP, DBL_C 0.56 49.0 2.78e-01 100.0% 23.9%
4459729 213.1.1.1 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.56 45.0 3.09e-01 92.9% 26.2%
3729765 223.1.1.21 a+b three layers › Profilin-like › sensor domains › sensor domains › HODM_asu-like 0.56 46.0 2.77e-01 100.0% 14.1%
3971950 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 45.0 3.62e-01 92.9% 43.3%
4985673 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 42.0 3.37e-01 85.7% 84.4%
4206579 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.54 44.0 3.46e-01 92.9% 42.1%
4337722 3001.1.1.1 alpha arrays › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › THDPS_N_2 0.54 45.0 3.68e-01 97.6% 52.9%
3943176 101.1.2.1 alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.54 43.0 3.43e-01 92.9% 45.6%
5013703 304.158.1.0 a+b two layers › Alpha-beta plaits › CRISPR system Cas5 homologs › CRISPR system Cas5 homologs 0.53 44.0 2.85e-01 100.0% 46.8%