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CG_2015-01t_scaffold_1_prodigal-single.1__X__X__00493
Bact-VirCG_2015-01t_scaffold_1_prodigal-single.1__X__X__00493
Identity
- Kingdom:
- phage
Quality
74.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 61-141
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ffjA01 | 1.10.8.380 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 | 0.66 | 35.0 | 4.08e-01 | 74.1% | 73.2% |
| 3w0eA00 | 3.30.10.10 | Alpha Beta › 2-Layer Sandwich › Trypsin Inhibitor V; Chain A › Trypsin Inhibitor V, subunit A | 0.65 | 49.0 | 5.28e-01 | 97.5% | 95.6% |
| 2p5kA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 45.0 | 4.97e-01 | 97.5% | 98.4% |
| 6abqB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 50.0 | 4.61e-01 | 100.0% | 68.9% |
| 1u5tB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 47.0 | 4.95e-01 | 100.0% | 100.0% |
| 2ds2D01 | 1.10.110.10 | Mainly Alpha › Orthogonal Bundle › Hydrophobic Seed Protein › Plant lipid-transfer and hydrophobic proteins | 0.59 | 40.0 | 4.44e-01 | 81.5% | 100.0% |
| 6xxvC00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.59 | 48.0 | 4.37e-01 | 90.1% | 89.2% |
| 2x2vA00 | 1.20.20.10 | Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C | 0.58 | 33.0 | 3.50e-01 | 71.6% | 63.2% |
| 1kl9A02 | 1.10.150.190 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 | 0.55 | 39.0 | 3.73e-01 | 77.8% | 65.2% |
| 2gsvA00 | 6.10.140.40 | Special › Helix non-globular › Helix Hairpins › | 0.53 | 40.0 | 4.25e-01 | 96.3% | 100.0% |
| 2arpF02 | 3.30.60.30 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.53 | 25.0 | 2.68e-01 | 86.4% | 41.7% |
| 2f3oA00 | 3.20.70.20 | Alpha Beta › Alpha-Beta Barrel › Anaerobic Ribonucleotide-triphosphate Reductase Large Chain › | 0.52 | 42.0 | 2.49e-01 | 92.6% | 25.2% |
| 8jj7A01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 41.0 | 2.91e-01 | 92.6% | 64.7% |
| 3fkeA02 | 2.10.10.70 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Filoviridae VP35, C-terminal inhibitory domain, beta-sheet subdomain | 0.50 | 29.0 | 3.31e-01 | 77.8% | 84.6% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2568548 | 270.1.1.3 ↗ | beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › N_formyltrans_C | 0.65 | 28.0 | 3.32e-01 | 96.3% | 57.1% |
| 3700991 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.64 | 51.0 | 4.77e-01 | 100.0% | 68.6% |
| 3995141 | 101.1.2.33 ↗ | alpha arrays › HTH › HTH › winged helix domain › TFIIE_beta | 0.57 | 49.0 | 4.89e-01 | 100.0% | 97.6% |
| 4216195 | 101.1.1.499 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › CAF1-p150_C2 | 0.56 | 45.0 | 4.45e-01 | 100.0% | 83.5% |
| 4889520 | 2002.1.1.320 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Fas1-AflB-like_hel, DNA_pol_B_N | 0.52 | 43.0 | 2.88e-01 | 93.8% | 61.5% |
| 4086325 | 2003.1.1.120 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD-bd_HRPKS_sdrA | 0.51 | 35.0 | 2.65e-01 | 92.6% | 27.6% |
| 3998949 | 304.137.1.2 ↗ | a+b two layers › Alpha-beta plaits › NOL1/NOP2/sun N-terminal ferredoxin-like domain › NOL1/NOP2/sun N-terminal ferredoxin-like domain › NSUN5_fdxn-like | 0.51 | 36.0 | 3.64e-01 | 85.2% | 74.1% |
D2
high
residues 153-270
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3njaA02 | 2.10.70.100 | Mainly Beta › Ribbon › Complement Module; domain 1 › | 0.52 | 21.0 | 3.24e-01 | 76.3% | 93.5% |
| 3wp4A00 | 2.60.120.180 | Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain | 0.50 | 29.0 | 2.35e-01 | 96.6% | 28.1% |
D3
medium
residues 1-58