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CG_2015-01t_scaffold_1_prodigal-single.1__X__X__00534

Bact-Vir

CG_2015-01t_scaffold_1_prodigal-single.1__X__X__00534

Identity

Kingdom:
phage

Quality

71.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-101
PDB
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ygyA04 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.75 40.0 4.37e-01 100.0% 63.2%
2dulA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.68 52.0 3.62e-01 100.0% 24.7%
7bvaA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.68 47.0 3.48e-01 70.2% 32.3%
1lq9A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 36.0 3.45e-01 100.0% 50.0%
3hrdC02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.60 49.0 4.68e-01 91.5% 89.4%
1ah5A03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.59 40.0 4.18e-01 95.7% 76.7%
1ukxA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.59 46.0 4.05e-01 100.0% 57.7%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 36.0 3.79e-01 92.6% 68.7%
3hkmB00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.58 48.0 3.74e-01 91.5% 97.2%
3ijlA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.58 40.0 3.87e-01 72.3% 63.9%
2ichA01 2.40.370.10 Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain 0.57 47.0 3.88e-01 91.5% 85.5%
2fmaA00 3.30.1490.140 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Amyloidogenic glycoprotein, copper-binding domain 0.57 36.0 4.22e-01 100.0% 100.0%
6gp1A00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.57 31.0 3.64e-01 84.0% 75.4%
8b4hA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.56 48.0 4.04e-01 94.7% 59.9%
1rm6B02 3.30.390.50 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › CO dehydrogenase flavoprotein, C-terminal domain 0.56 46.0 4.43e-01 91.5% 90.7%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 30.0 3.44e-01 91.5% 71.2%
7oufB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.56 44.0 3.86e-01 94.7% 55.0%
2ia7A00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 46.0 4.36e-01 100.0% 75.7%
2g2sA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.55 29.0 3.42e-01 80.9% 73.4%
1mruA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 34.0 3.45e-01 100.0% 63.0%
3thxA02 3.30.420.110 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain 0.54 45.0 3.75e-01 90.4% 84.8%
2i1yA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.54 45.0 3.23e-01 92.6% 71.1%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 31.0 3.62e-01 78.7% 84.1%
4bs9A05 3.30.160.660 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 45.0 4.20e-01 91.5% 78.9%
1sr9A02 3.30.160.270 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Alpha-isopropylmalate synthase LeuA, regulatory domain 0.53 47.0 3.94e-01 100.0% 73.2%
1j0wB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 32.0 3.18e-01 96.8% 53.4%
1tuwA00 3.30.70.1090 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel. 0.53 31.0 3.05e-01 100.0% 50.0%
1v89A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 34.0 3.20e-01 97.9% 52.5%
4mypA00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 42.0 3.90e-01 88.3% 80.2%
3cyjA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 43.0 3.99e-01 90.4% 97.5%
2ap1A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.52 45.0 3.99e-01 96.8% 97.8%
2wllA02 2.60.40.1400 Mainly Beta › Sandwich › Immunoglobulin-like › G protein-activated inward rectifier potassium channel 1 0.52 43.0 3.80e-01 92.6% 84.1%
4c2mA09 3.30.70.2850 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 45.0 3.72e-01 100.0% 76.4%
4k08A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 44.0 3.81e-01 100.0% 62.5%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4180585 7520.1.1.1 a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like › CinA 0.73 53.0 4.47e-01 75.5% 86.0%
3799373 513.2.1.0 a+b two layers › Obg GTP-binding protein C-terminal domain-like › Putative transferase PH0793 N-terminal domain › Putative transferase PH0793 N-terminal domain 0.70 42.0 2.83e-01 100.0% 15.8%
4609498 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.69 48.0 5.16e-01 98.9% 83.7%
3879303 330.1.1.5 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM 0.69 47.0 5.02e-01 70.2% 93.8%
3937984 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.69 50.0 4.94e-01 76.6% 89.0%
3852952 330.1.1.5 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM 0.68 47.0 5.09e-01 72.3% 91.3%
4937410 330.2.1.0 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.67 46.0 4.67e-01 71.3% 70.5%
4004011 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.67 51.0 4.89e-01 81.9% 95.5%
4558929 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.66 44.0 4.66e-01 75.5% 80.0%
3266842 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.66 45.0 4.13e-01 71.3% 79.2%
3927710 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.66 45.0 3.71e-01 70.2% 61.8%
3803688 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.65 56.0 4.73e-01 93.6% 85.2%
3871082 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.65 44.0 3.79e-01 70.2% 65.3%
3236475 277.1.1.1 a+b two layers › PX domain › PX domain › PX domain › PX 0.64 44.0 3.89e-01 70.2% 73.3%
4289288 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.64 47.0 4.29e-01 78.7% 58.6%
4438684 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.64 43.0 4.55e-01 97.9% 78.6%
4416182 241.15.1.3 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 0.64 44.0 4.30e-01 72.3% 75.2%
3317463 2484.1.1.67 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.63 53.0 4.60e-01 91.5% 86.2%
5048993 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 43.0 3.92e-01 72.3% 51.5%
5018204 7520.1.1.0 a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like 0.63 46.0 3.81e-01 77.7% 73.9%
4036906 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.62 41.0 4.35e-01 94.7% 77.5%
3633078 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 39.0 3.59e-01 95.7% 48.0%
3492229 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.62 42.0 4.28e-01 70.2% 71.6%
3282536 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.62 43.0 4.63e-01 73.4% 90.0%
4888978 2485.2.1.1 a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RTC_insert 0.61 42.0 4.08e-01 71.3% 94.3%
3715712 2485.2.1.1 a+b three layers › Thioredoxin-like › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RNA 3'-terminal phosphate cyclase, RPTC, insert domain › RTC_insert 0.61 43.0 4.14e-01 72.3% 98.1%
4873579 4019.1.1.3 alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Transpeptidase 0.61 47.0 5.06e-01 98.9% 100.0%
3516660 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.61 46.0 4.59e-01 94.7% 78.9%
3499841 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.61 43.0 4.42e-01 77.7% 77.8%
4365325 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.61 41.0 4.33e-01 75.5% 77.6%
3472467 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.60 45.0 4.96e-01 88.3% 100.0%
4116159 330.1.1.5 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM 0.60 45.0 4.58e-01 81.9% 82.2%
3510355 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.60 44.0 4.07e-01 76.6% 69.2%
3201410 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 40.0 3.44e-01 96.8% 43.4%
4132764 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.60 41.0 4.31e-01 98.9% 78.8%
4048220 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.59 41.0 4.40e-01 95.7% 86.3%
4216680 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.59 41.0 4.18e-01 96.8% 74.2%
3508084 220.1.1.7 beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.58 37.0 3.86e-01 94.7% 70.6%
4975692 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.57 40.0 4.13e-01 98.9% 76.7%
3267746 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.57 42.0 4.36e-01 100.0% 84.7%
4965501 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.57 40.0 4.07e-01 94.7% 74.4%
3401205 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 45.0 2.93e-01 86.2% 40.0%
4275948 220.1.1.52 beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C 0.57 42.0 3.91e-01 91.5% 60.8%
4967370 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.57 38.0 3.94e-01 76.6% 72.2%
4058654 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.57 41.0 4.03e-01 100.0% 71.7%
4984391 244.3.1.3 a+b two layers › FAD-linked reductases, C-terminal domain-like › SufE/NifU › SufE/NifU › CO_deh_flav_C 0.57 47.0 4.55e-01 92.6% 90.7%
2971782 2484.1.1.39 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Fumble 0.56 46.0 4.34e-01 89.4% 77.2%
4679671 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.56 48.0 4.48e-01 96.8% 98.3%
3786990 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.55 40.0 3.64e-01 76.6% 60.0%
4973433 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.55 39.0 4.02e-01 97.9% 77.8%
3514575 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.55 47.0 4.55e-01 97.9% 84.8%
3558388 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.54 36.0 4.22e-01 96.8% 98.5%
3898198 220.1.1.184 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_S11IP 0.54 38.0 3.45e-01 71.3% 54.4%
5027613 512.1.1.0 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.54 47.0 3.46e-01 96.8% 65.9%
4524129 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.54 42.0 4.23e-01 95.7% 83.2%
3801480 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 40.0 3.43e-01 79.8% 73.5%
3701806 848.1.1.1 a+b complex topology › Hsp33 domain › Hsp33 domain › Hsp33 domain › HSP33 0.53 46.0 3.32e-01 100.0% 59.3%
3605297 306.10.1.0 a+b two layers › Glucose permease domain IIB-like › H1 domain of KCTD12 › H1 domain of KCTD12 0.53 48.0 4.38e-01 100.0% 95.2%
3914097 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.53 47.0 3.24e-01 98.9% 57.1%
5038162 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.53 41.0 3.43e-01 86.2% 63.4%
3713814 306.10.1.0 a+b two layers › Glucose permease domain IIB-like › H1 domain of KCTD12 › H1 domain of KCTD12 0.53 47.0 4.41e-01 98.9% 98.3%
3716774 306.5.1.2 a+b two layers › Glucose permease domain IIB-like › GTP cyclohydrolase I feedback regulatory protein, GFRP › GTP cyclohydrolase I feedback regulatory protein, GFRP › PF28980 0.53 47.0 4.44e-01 100.0% 95.7%
3647427 10.1.1.11 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.53 37.0 3.30e-01 96.8% 52.3%
3709816 306.5.1.0 a+b two layers › Glucose permease domain IIB-like › GTP cyclohydrolase I feedback regulatory protein, GFRP › GTP cyclohydrolase I feedback regulatory protein, GFRP 0.52 47.0 4.44e-01 100.0% 95.7%
4262943 220.1.1.184 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_S11IP 0.51 36.0 3.32e-01 96.8% 55.2%
3615104 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.51 36.0 3.68e-01 75.5% 90.5%