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CG_2015-01t_scaffold_1_prodigal-single.1__X__X__00559
Bact-VirCG_2015-01t_scaffold_1_prodigal-single.1__X__X__00559
Identity
- Kingdom:
- phage
Quality
74.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 3-53
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1sfuA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.84 | 66.0 | 5.95e-01 | 86.3% | 91.4% |
| 2plyB01 | 1.10.10.2770 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.81 | 72.0 | 5.23e-01 | 100.0% | 81.2% |
| 1fokA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.80 | 64.0 | 5.42e-01 | 90.2% | 75.9% |
| 1vw4L01 | 3.90.1030.10 | Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 | 0.72 | 61.0 | 4.52e-01 | 96.1% | 90.4% |
| 3f8mA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 49.0 | 4.67e-01 | 86.3% | 96.9% |
| 2qneA01 | 3.20.20.480 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Trimethylamine methyltransferase-like | 0.62 | 42.0 | 2.48e-01 | 70.6% | 61.0% |
| 4h89A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.59 | 45.0 | 3.29e-01 | 90.2% | 42.9% |
| 1bu8A01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.57 | 43.0 | 2.74e-01 | 94.1% | 90.3% |
| 2oaaB01 | 3.40.210.20 | Alpha Beta › 3-Layer(aba) Sandwich › PvuII Endonuclease; Chain A › MvaI/BcnI restriction endonuclease, catalytic domain | 0.55 | 44.0 | 3.54e-01 | 92.2% | 79.6% |
| 4bpxD00 | 1.20.930.80 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › | 0.52 | 43.0 | 2.94e-01 | 100.0% | 82.6% |
| 1l8rA00 | 3.10.260.20 | Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Ski | 0.50 | 36.0 | 3.05e-01 | 82.4% | 82.2% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5022580 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.88 | 76.0 | 6.14e-01 | 92.2% | 72.2% |
| 4932302 | 101.1.2.913 ↗ | alpha arrays › HTH › HTH › winged helix domain › WH_Lhr | 0.84 | 65.0 | 5.61e-01 | 84.3% | 80.0% |
| 4952560 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.82 | 74.0 | 5.97e-01 | 100.0% | 84.2% |
| 4553364 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.81 | 69.0 | 6.20e-01 | 98.0% | 68.6% |
| 3481937 | 101.1.2.118 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dcc1 | 0.79 | 62.0 | 5.28e-01 | 88.2% | 96.5% |
| 4961792 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.75 | 67.0 | 5.66e-01 | 100.0% | 100.0% |
| 4946699 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 63.0 | 5.21e-01 | 100.0% | 74.2% |
| 3656604 | 148.1.3.41 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM5_C | 0.69 | 59.0 | 5.21e-01 | 96.1% | 96.0% |
| 4927188 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 62.0 | 6.06e-01 | 100.0% | 100.0% |
| 4020468 | 301.1.1.0 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like | 0.59 | 50.0 | 3.73e-01 | 92.2% | 80.5% |
| 3592253 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.59 | 44.0 | 3.26e-01 | 88.2% | 32.5% |
| 3782883 | 3012.1.1.8 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › Ned1_M | 0.55 | 45.0 | 3.71e-01 | 90.2% | 97.8% |
| 4931974 | 2002.1.1.142 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MTTB | 0.52 | 39.0 | 2.49e-01 | 86.3% | 17.8% |
D2
medium
residues 56-100
Domain cluster:
representative
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1r6xA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.70 | 40.0 | 2.52e-01 | 86.7% | 11.7% |
| 2w0tA00 | 3.30.60.160 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.69 | 55.0 | 5.67e-01 | 95.6% | 93.0% |
| 3mekA02 | 6.10.140.2220 | Special › Helix non-globular › Helix Hairpins › | 0.68 | 53.0 | 5.16e-01 | 88.9% | 77.6% |
| 5yvxA00 | 3.30.40.100 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.66 | 44.0 | 4.09e-01 | 71.1% | 70.0% |
| 2y8yA02 | 3.30.70.1210 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 | 0.65 | 43.0 | 3.09e-01 | 88.9% | 27.0% |
| 6xi7B02 | 3.30.60.20 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.64 | 44.0 | 4.67e-01 | 77.8% | 84.6% |
| 5sviB00 | 3.30.40.100 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › | 0.62 | 42.0 | 4.06e-01 | 71.1% | 73.6% |
| 4n4fA02 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.62 | 43.0 | 4.48e-01 | 73.3% | 87.5% |
| 3p2aA01 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.61 | 44.0 | 4.74e-01 | 82.2% | 97.2% |
| 2apoB00 | 2.20.28.40 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › H/ACA ribonucleoprotein complex, subunit Nop10 | 0.60 | 33.0 | 3.17e-01 | 73.3% | 41.8% |
| 2vrwB03 | 3.30.60.20 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.58 | 47.0 | 4.51e-01 | 91.1% | 77.4% |
| 2kz6A01 | 6.10.140.1310 | Special › Helix non-globular › Helix Hairpins › | 0.56 | 44.0 | 3.64e-01 | 86.7% | 48.1% |
| 5fb0C01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.56 | 39.0 | 3.64e-01 | 75.6% | 62.3% |
| 2mknA00 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.56 | 43.0 | 4.40e-01 | 100.0% | 95.5% |
| 2xjyA01 | 2.10.110.10 | Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein | 0.54 | 45.0 | 4.10e-01 | 97.8% | 98.4% |
| 3m7nA03 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.52 | 31.0 | 3.49e-01 | 71.1% | 79.4% |
| 5h66A00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 42.0 | 2.74e-01 | 100.0% | 21.4% |
| 2ds5A00 | 6.20.220.10 | Special › Other non-globular › Erythroid Transcription Factor GATA-1; Chain A › ClpX chaperone, C4-type zinc finger domain | 0.51 | 36.0 | 3.71e-01 | 77.8% | 81.4% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5004198 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.94 | 66.0 | 7.42e-01 | 77.8% | 94.3% |
| 5004690 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.94 | 66.0 | 7.37e-01 | 77.8% | 94.3% |
| 3337279 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.78 | 53.0 | 5.86e-01 | 71.1% | 94.3% |
| 4155531 | 377.1.1.15 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › YacG | 0.78 | 68.0 | 6.56e-01 | 97.8% | 84.0% |
| 3660246 | 376.1.3.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD | 0.75 | 63.0 | 6.11e-01 | 93.3% | 100.0% |
| 3584576 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.75 | 61.0 | 5.99e-01 | 88.9% | 81.6% |
| 3451619 | 102.1.1.117 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › DUF1677 | 0.72 | 57.0 | 4.49e-01 | 88.9% | 63.2% |
| 3777921 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.71 | 50.0 | 2.91e-01 | 75.6% | 9.2% |
| 3698517 | 375.1.1.77 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF4379 | 0.67 | 49.0 | 4.79e-01 | 80.0% | 96.0% |
| 4926891 | 377.1.1.126 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › Arc_trans_TRASH | 0.67 | 61.0 | 6.11e-01 | 100.0% | 100.0% |
| 3658922 | 148.1.3.176 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DUF1677 | 0.67 | 51.0 | 4.24e-01 | 86.7% | 74.1% |
| 3907976 | 377.9.1.8 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-FCS | 0.66 | 57.0 | 5.79e-01 | 97.8% | 100.0% |
| 3472460 | 1017.1.1.1 ↗ | a+b two layers › Rrs1 › Rrs1 › Rrs1 › RRS1 | 0.66 | 42.0 | 3.51e-01 | 93.3% | 38.7% |
| 5073000 | 4123.1.1.0 ↗ | few secondary structure elements › E7 C-terminal domain-like › E7 C-terminal domain-like › E7 C-terminal domain-like | 0.65 | 49.0 | 5.14e-01 | 82.2% | 95.0% |
| 5039298 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.62 | 43.0 | 4.63e-01 | 75.6% | 94.3% |
| 3269829 | 377.9.1.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › HIT/MYND zinc finger-like › HIT/MYND zinc finger-like › zf-MYND | 0.60 | 50.0 | 5.05e-01 | 93.3% | 91.1% |
| 3633209 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.60 | 44.0 | 4.08e-01 | 82.2% | 81.7% |
| 4968920 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.58 | 45.0 | 3.64e-01 | 88.9% | 50.5% |
| 3392574 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.57 | 43.0 | 4.30e-01 | 84.4% | 86.7% |
| 3819953 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.57 | 42.0 | 4.27e-01 | 86.7% | 97.8% |
| 3704672 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 40.0 | 4.19e-01 | 80.0% | 95.0% |
| 3297615 | 376.1.3.25 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD-1st_NSD | 0.56 | 41.0 | 3.94e-01 | 84.4% | 74.5% |
| 4990542 | 377.1.1.128 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › DUF2175 | 0.55 | 42.0 | 4.23e-01 | 91.1% | 86.7% |
| 3898158 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 42.0 | 3.80e-01 | 93.3% | 67.1% |
| 3216671 | 389.1.1.0 ↗ | few secondary structure elements › EGF-like › EGF-related › EGF/Laminin | 0.54 | 35.0 | 3.68e-01 | 82.2% | 75.0% |
| 3785476 | 375.1.1.57 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Vps36-NZF-N | 0.54 | 38.0 | 3.88e-01 | 80.0% | 80.0% |
| 3197786 | 376.1.3.75 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf_Tbcl_Rhp7 | 0.53 | 44.0 | 4.26e-01 | 93.3% | 82.0% |
| 3547848 | 376.1.1.107 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › PHD_NSD | 0.53 | 42.0 | 3.69e-01 | 100.0% | 71.2% |
| 3493053 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.53 | 38.0 | 3.97e-01 | 84.4% | 97.5% |
| 3809619 | 376.1.3.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger | 0.51 | 38.0 | 3.67e-01 | 100.0% | 74.5% |
| 3235875 | 376.1.4.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR | 0.51 | 42.0 | 3.74e-01 | 97.8% | 85.7% |
| 3703426 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 40.0 | 2.45e-01 | 86.7% | 20.7% |
| 3176989 | 601.19.1.40 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › PF28954 | 0.51 | 42.0 | 2.85e-01 | 91.1% | 26.2% |
| 4635530 | 4028.1.1.1 ↗ | beta barrels › Barrel domain in heme-dependent catalases › Barrel domain in heme-dependent catalases › Barrel domain in heme-dependent catalases › Catalase | 0.50 | 39.0 | 2.30e-01 | 91.1% | 56.0% |
| 4618205 | 604.1.1.150 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF28954 | 0.50 | 42.0 | 3.05e-01 | 91.1% | 90.0% |
| 4015777 | 376.1.6.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain | 0.50 | 36.0 | 3.52e-01 | 84.4% | 81.8% |